Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 119.07811 * 2 1 4 4 C 1.32653 * 120.98403 * 180.02562 * 3 2 1 5 5 Cl 1.73605 * 120.41599 * 180.02562 * 4 3 2 6 6 C 1.38321 * 119.17148 * 359.97438 * 4 3 2 7 7 C 1.39524 * 118.31886 * 0.02562 * 6 4 3 8 8 N 1.38564 * 120.52324 * 180.02562 * 7 6 4 9 9 C 1.48566 * 110.99780 * 300.12247 * 8 7 6 10 10 C 1.54378 * 104.59376 * 200.95810 * 9 8 7 11 11 C 1.54258 * 105.05931 * 23.85692 * 10 9 8 12 12 O 1.42903 * 110.32520 * 118.99930 * 11 10 9 13 13 C 1.50702 * 110.31938 * 241.10222 * 11 10 9 14 14 H 1.08002 * 120.00299 * 118.55053 * 13 11 10 15 15 C 1.37884 * 119.99942 * 298.26612 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.48558 * 111.00238 * 184.70871 * 8 7 6 22 22 N 1.31750 * 119.07376 * 180.28366 * 2 1 3 23 23 H 1.09002 * 109.47633 * 89.99766 * 1 2 3 24 24 H 1.09007 * 109.47371 * 209.99827 * 1 2 3 25 25 H 1.08999 * 109.47085 * 329.99452 * 1 2 3 26 26 H 1.07997 * 120.84419 * 180.02562 * 6 4 3 27 27 H 1.09003 * 110.41029 * 82.17965 * 9 8 7 28 28 H 1.09000 * 110.40833 * 319.74088 * 9 8 7 29 29 H 1.08995 * 110.32376 * 264.95634 * 10 9 8 30 30 H 1.09010 * 110.32362 * 142.74775 * 10 9 8 31 31 H 0.96699 * 113.99905 * 62.82283 * 12 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.08997 * 110.41640 * 40.25343 * 21 8 7 34 34 H 1.09005 * 110.40400 * 277.81796 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1518 0.0000 4 6 3.4732 1.1959 -0.0005 5 17 4.3019 2.7214 0.0002 6 6 4.1872 0.0112 -0.0005 7 6 3.4769 -1.1897 -0.0005 8 7 4.1460 -2.4031 0.0000 9 6 5.0131 -2.5334 -1.1993 10 6 5.2445 -4.0524 -1.3487 11 6 4.0470 -4.7124 -0.6348 12 8 3.2952 -5.5050 -1.5560 13 6 4.5260 -5.5610 0.5149 14 1 4.2173 -5.3281 1.5233 15 6 5.3536 -6.6382 0.2786 16 7 5.7294 -6.9218 -0.9493 17 14 5.9410 -7.6946 1.7028 18 1 4.9772 -8.8015 1.9286 19 1 7.2767 -8.2589 1.3824 20 1 6.0362 -6.8632 2.9296 21 6 3.1928 -3.5368 -0.1139 22 7 2.1472 -1.1515 -0.0057 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.2672 0.0156 -0.0005 27 1 5.9606 -2.0182 -1.0412 28 1 4.5064 -2.1376 -2.0795 29 1 6.1787 -4.3421 -0.8677 30 1 5.2578 -4.3315 -2.4024 31 1 3.7900 -6.2454 -1.9329 32 1 6.3119 -7.6795 -1.1155 33 1 2.4012 -3.2981 -0.8242 34 1 2.7696 -3.7770 0.8615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = -12.876507 kcal Electronic energy + Delta-G solvation = -20145.636295 eV Core-core repulsion = 16911.027783 eV Total energy + Delta-G solvation = -3234.608512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.45472 -40.19534 -38.02710 -37.13477 -34.39713 -34.17466 -33.95317 -30.73399 -30.26200 -29.27600 -26.90590 -24.76672 -24.05315 -22.25481 -21.41423 -19.12311 -18.91646 -18.63428 -16.97399 -16.80553 -16.69712 -16.37378 -16.05308 -15.71624 -14.92391 -14.73153 -14.29889 -14.13982 -14.02622 -13.58334 -13.32263 -13.27083 -13.12510 -12.84509 -12.61589 -12.54400 -12.39118 -12.27041 -12.06211 -11.96388 -11.56738 -11.04696 -10.74383 -10.60812 -10.53931 -10.18411 -9.68520 -8.21291 -6.34424 -0.31911 -0.23654 0.43238 1.41581 1.44706 1.53513 2.24935 2.40575 2.52737 2.85671 3.04935 3.24874 3.65508 3.81505 3.86081 4.12035 4.17224 4.22906 4.33701 4.52549 4.57966 4.69923 4.75275 4.84326 4.93869 5.00385 5.16013 5.24574 5.45381 5.60581 5.74363 5.86035 5.90251 6.15868 6.69365 6.90367 7.33984 7.42782 8.84524 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.004441 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.475894 B = 6303.427977 C = 6707.098613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.351 3.649 3 N -0.549 5.549 4 C 0.234 3.766 5 Cl 0.003 6.997 6 C -0.232 4.232 7 C 0.358 3.642 8 N -0.449 5.449 9 C 0.053 3.947 10 C -0.114 4.114 11 C 0.232 3.768 12 O -0.599 6.599 13 C -0.547 4.547 14 H 0.049 0.951 15 C 0.033 3.967 16 N -0.911 5.911 17 Si 0.956 3.044 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.080 3.920 22 N -0.570 5.570 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.175 0.825 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.380 0.620 32 H 0.270 0.730 33 H 0.057 0.943 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 14.709 -0.438 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 N -0.270 5.270 4 C 0.063 3.937 5 Cl 0.032 6.968 6 C -0.258 4.258 7 C 0.117 3.883 8 N -0.166 5.166 9 C -0.072 4.072 10 C -0.153 4.153 11 C 0.192 3.808 12 O -0.408 6.408 13 C -0.585 4.585 14 H 0.067 0.933 15 C -0.168 4.168 16 N -0.551 5.551 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.046 4.046 22 N -0.292 5.292 23 H 0.122 0.878 24 H 0.111 0.889 25 H 0.123 0.877 26 H 0.192 0.808 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.030 15.068 0.082 15.598 hybrid contribution 1.530 -1.082 0.076 1.876 sum -2.500 13.986 0.158 14.208 Atomic orbital electron populations 1.20749 0.82456 1.05350 1.05352 1.23789 0.99403 0.81136 0.87368 1.67755 1.08435 1.31140 1.19629 1.21893 0.89879 0.88570 0.93320 1.98420 1.74742 1.27733 1.95902 1.22141 1.03875 0.89753 1.10031 1.20560 0.88316 0.91638 0.87772 1.62044 1.17484 0.99562 1.37492 1.23295 0.97163 0.98746 0.87993 1.22715 1.00988 0.91897 0.99664 1.19501 0.86639 0.87704 0.86947 1.86085 1.45322 1.46316 1.63060 1.21803 1.29891 1.13129 0.93688 0.93273 1.25585 0.95100 0.97908 0.98159 1.69741 1.35970 1.29175 1.20168 0.85597 0.77653 0.78784 0.79799 1.20411 1.20390 1.19995 1.22654 0.92989 0.88267 1.00712 1.68396 1.09112 1.31625 1.20031 0.87838 0.88905 0.87687 0.80777 0.87159 0.92649 0.91967 0.92457 0.76982 0.92065 0.92486 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.32 71.23 0.73 -0.86 16 2 C 0.35 10.09 7.64 138.76 1.06 11.15 16 3 N -0.55 -15.64 10.33 -179.01 -1.85 -17.48 16 4 C 0.23 6.35 7.33 84.59 0.62 6.97 16 5 Cl 0.00 0.07 29.15 -2.72 -0.08 -0.01 16 6 C -0.23 -6.58 9.30 22.60 0.21 -6.37 16 7 C 0.36 12.27 6.23 133.12 0.83 13.10 16 8 N -0.45 -17.18 5.41 -687.39 -3.72 -20.91 16 9 C 0.05 1.85 5.94 86.45 0.51 2.36 16 10 C -0.11 -4.95 5.56 31.49 0.18 -4.77 16 11 C 0.23 11.29 1.06 -10.65 -0.01 11.28 16 12 O -0.60 -30.73 12.95 -148.98 -1.93 -32.66 16 13 C -0.55 -29.05 8.09 25.60 0.21 -28.84 16 14 H 0.05 2.68 7.53 -2.91 -0.02 2.66 16 15 C 0.03 1.70 5.02 84.66 0.43 2.13 16 16 N -0.91 -47.07 10.80 21.45 0.23 -46.84 16 17 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.08 3.54 5.16 86.45 0.45 3.99 16 22 N -0.57 -19.45 8.54 -185.48 -1.58 -21.04 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.17 4.14 7.99 -2.91 -0.02 4.11 16 27 H 0.11 3.20 8.10 -2.39 -0.02 3.18 16 28 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 29 H 0.06 2.94 7.25 -2.39 -0.02 2.92 16 30 H 0.06 2.49 7.98 -2.38 -0.02 2.47 16 31 H 0.38 19.69 7.28 -74.06 -0.54 19.15 16 32 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 33 H 0.06 2.53 7.21 -2.39 -0.02 2.51 16 34 H 0.07 3.19 7.67 -2.38 -0.02 3.18 16 Total: -1.00 -58.04 301.41 -1.10 -59.14 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.60 Total: 25.88 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.21 Total: 10.12 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -6.92 Total: -106.27 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.93 Total: -32.66 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.08 Total: -0.01 kcal Total: -58.04 -1.10 -59.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.264 kcal (2) G-P(sol) polarization free energy of solvation -58.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds