Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28463 * 124.88484 * 2 1 4 4 C 1.31796 * 110.11182 * 180.02562 * 3 2 1 5 5 C 1.47718 * 126.50899 * 180.02562 * 4 3 2 6 6 O 1.21577 * 119.99484 * 185.67407 * 5 4 3 7 7 N 1.34769 * 120.00000 * 5.94806 * 5 4 3 8 8 C 1.46505 * 119.99635 * 174.54111 * 7 5 4 9 9 C 1.53003 * 109.46660 * 183.71239 * 8 7 5 10 10 C 1.50706 * 115.55133 * 65.39827 * 9 8 7 11 11 H 1.07999 * 119.99073 * 265.58676 * 10 9 8 12 12 C 1.37872 * 120.00055 * 85.58193 * 10 9 8 13 13 N 1.31506 * 120.00608 * 355.25741 * 12 10 9 14 14 Si 1.86803 * 119.99662 * 175.26039 * 12 10 9 15 15 H 1.48501 * 109.47210 * 89.99623 * 14 12 10 16 16 H 1.48501 * 109.47125 * 209.99674 * 14 12 10 17 17 H 1.48503 * 109.47002 * 329.99828 * 14 12 10 18 18 C 1.53000 * 117.50021 * 279.72139 * 9 8 7 19 19 C 1.53002 * 117.49542 * 211.05767 * 9 8 7 20 20 C 1.41495 * 106.97929 * 0.26135 * 4 3 2 21 21 C 1.35062 * 124.88418 * 179.97438 * 2 1 3 22 22 Cl 1.73602 * 126.40382 * 0.02562 * 21 2 1 23 23 H 1.08994 * 109.47674 * 90.02225 * 1 2 3 24 24 H 1.09006 * 109.47169 * 210.02426 * 1 2 3 25 25 H 1.08999 * 109.47517 * 330.02251 * 1 2 3 26 26 H 0.96993 * 120.00361 * 354.53358 * 7 5 4 27 27 H 1.08998 * 109.46959 * 303.70710 * 8 7 5 28 28 H 1.08994 * 109.47516 * 63.71353 * 8 7 5 29 29 H 0.97000 * 120.00451 * 185.06222 * 13 12 10 30 30 H 1.08997 * 117.50078 * 359.97438 * 18 9 8 31 31 H 1.08997 * 117.49987 * 145.02939 * 18 9 8 32 32 H 1.09002 * 117.50077 * 214.97980 * 19 9 8 33 33 H 1.08997 * 117.50384 * 359.97438 * 19 9 8 34 34 H 1.07998 * 127.26444 * 179.73791 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7177 -0.0006 5 6 4.6266 1.6417 -0.0002 6 8 5.7562 1.2044 -0.1049 7 7 4.4263 2.9688 0.1217 8 6 5.5716 3.8744 0.2424 9 6 5.0708 5.3038 0.4592 10 6 4.3372 5.5462 1.7531 11 1 3.2595 5.4829 1.7827 12 6 5.0419 5.8488 2.8989 13 7 6.3568 5.8343 2.8854 14 14 4.1287 6.2791 4.4707 15 1 3.8756 5.0412 5.2509 16 1 4.9500 7.2150 5.2799 17 1 2.8346 6.9233 4.1307 18 6 4.6079 6.0847 -0.7724 19 6 5.9302 6.4443 -0.0900 20 6 3.5285 -0.6962 -0.0071 21 6 2.2374 -1.1079 0.0005 22 17 1.6805 -2.7522 0.0006 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5135 26 1 3.5239 3.3244 0.1294 27 1 6.1860 3.5721 1.0904 28 1 6.1660 3.8322 -0.6703 29 1 6.8519 5.9747 3.7076 30 1 4.6606 5.5803 -1.7372 31 1 3.7731 6.7741 -0.6467 32 1 5.9646 7.3701 0.4843 33 1 6.8525 6.1764 -0.6053 34 1 4.4126 -1.3165 -0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831069363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = 62.008538 kcal Electronic energy + Delta-G solvation = -19531.371301 eV Core-core repulsion = 16300.010048 eV Total energy + Delta-G solvation = -3231.361253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.75168 -38.79906 -37.12822 -36.63325 -33.66717 -33.24798 -31.93982 -30.57473 -28.01049 -26.17542 -25.17446 -22.68863 -21.58022 -21.14287 -19.64448 -19.32517 -17.95901 -16.60642 -16.49649 -16.00687 -14.94193 -14.72816 -14.40333 -14.32538 -14.20112 -13.73264 -13.23167 -13.03821 -12.88584 -12.59426 -12.30487 -11.89102 -11.75913 -11.54869 -10.97085 -10.90978 -10.85374 -10.51481 -10.24872 -9.77453 -9.47019 -9.23959 -9.10282 -8.96676 -8.46721 -8.27250 -8.06388 -6.05093 -4.13453 1.29469 1.52609 1.96527 2.39623 3.27883 3.35338 3.37246 3.72509 3.87723 4.20967 4.38129 4.78142 4.89502 5.06994 5.08841 5.23045 5.31275 5.46347 5.63776 6.05062 6.20661 6.35081 6.36761 6.49485 6.57059 6.72196 6.88101 7.11628 7.25985 7.44323 7.50734 7.68757 7.84571 8.31957 8.36669 8.82014 8.87934 9.53284 11.02908 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.004239 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.630635 B = 6603.984784 C = 7100.970922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.278 5.278 3 N -0.237 5.237 4 C 0.006 3.994 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.685 5.685 8 C 0.162 3.838 9 C 0.026 3.974 10 C -0.498 4.498 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.211 4.211 19 C -0.145 4.145 20 C -0.153 4.153 21 C 0.044 3.956 22 Cl -0.004 7.004 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.406 0.594 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -13.022 -6.010 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.069 5.069 3 N -0.073 5.073 4 C -0.154 4.154 5 C 0.374 3.626 6 O -0.422 6.422 7 N -0.333 5.333 8 C 0.039 3.961 9 C 0.025 3.975 10 C -0.535 4.535 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.512 5.512 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.248 4.248 19 C -0.183 4.183 20 C -0.182 4.182 21 C -0.106 4.106 22 Cl 0.024 6.976 23 H 0.107 0.893 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.241 0.759 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.629 -12.418 -5.952 18.024 hybrid contribution -0.537 -0.520 1.001 1.249 sum -12.167 -12.938 -4.951 18.437 Atomic orbital electron populations 1.22258 0.72832 1.05906 1.04852 1.45474 1.08030 1.01620 1.51782 1.73781 1.03290 1.11491 1.18744 1.22122 0.91055 0.93753 1.08458 1.16795 0.85951 0.81982 0.77841 1.90767 1.22521 1.77275 1.51587 1.45839 1.12026 1.05083 1.70377 1.21096 0.86247 0.89165 0.99570 1.19031 0.98938 0.87520 0.91975 1.20345 0.92572 1.48740 0.91884 0.92190 1.24968 0.94790 0.94532 0.98708 1.69967 1.05468 1.48373 1.27344 0.86643 0.79835 0.78405 0.83451 1.20707 1.21167 1.19829 1.23033 0.98981 1.06236 0.96559 1.22486 0.91857 1.01439 1.02564 1.21470 0.95234 0.94085 1.07405 1.21870 0.91205 0.83387 1.14173 1.98386 1.89728 1.12054 1.97417 0.89291 0.88658 0.87704 0.75904 0.90546 0.94197 0.92862 0.91593 0.90329 0.89747 0.91622 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.14 59.84 0.67 1.25 16 2 N -0.28 -3.41 3.70 -64.88 -0.24 -3.65 16 3 N -0.24 -3.67 11.68 33.42 0.39 -3.28 16 4 C 0.01 0.11 7.13 -82.77 -0.59 -0.48 16 5 C 0.59 12.05 7.82 -12.39 -0.10 11.95 16 6 O -0.54 -12.48 16.94 5.30 0.09 -12.39 16 7 N -0.69 -14.19 5.46 -61.29 -0.33 -14.52 16 8 C 0.16 3.73 5.51 -4.04 -0.02 3.71 16 9 C 0.03 0.62 1.38 -155.65 -0.21 0.41 16 10 C -0.50 -12.98 8.71 -34.44 -0.30 -13.28 16 11 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 12 C 0.07 1.98 5.39 -17.83 -0.10 1.88 16 13 N -0.88 -24.42 12.85 55.43 0.71 -23.71 16 14 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.21 -4.42 9.96 -26.69 -0.27 -4.68 16 19 C -0.15 -3.33 9.36 -26.69 -0.25 -3.58 16 20 C -0.15 -2.25 10.80 -39.31 -0.42 -2.67 16 21 C 0.04 0.54 7.44 -17.10 -0.13 0.41 16 22 Cl 0.00 -0.03 28.67 -51.86 -1.49 -1.52 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.49 7.71 -51.93 -0.40 0.09 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.41 7.99 8.18 -40.82 -0.33 7.66 16 27 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 28 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.17 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -30.58 319.97 -6.87 -37.45 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.08 Total: 6.09 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.72 Total: -5.07 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.53 Total: -45.17 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.49 Total: -1.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.58 -6.87 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831069363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.462 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds