Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28463 * 124.88484 * 2 1 4 4 C 1.31796 * 110.11182 * 180.02562 * 3 2 1 5 5 C 1.47718 * 126.50899 * 180.02562 * 4 3 2 6 6 O 1.21577 * 119.99484 * 185.67407 * 5 4 3 7 7 N 1.34769 * 120.00000 * 5.94806 * 5 4 3 8 8 C 1.46505 * 119.99635 * 174.54111 * 7 5 4 9 9 C 1.53003 * 109.46660 * 183.71239 * 8 7 5 10 10 C 1.50706 * 115.55133 * 65.39827 * 9 8 7 11 11 H 1.07999 * 119.99073 * 265.58676 * 10 9 8 12 12 C 1.37872 * 120.00055 * 85.58193 * 10 9 8 13 13 N 1.31506 * 120.00608 * 355.25741 * 12 10 9 14 14 Si 1.86803 * 119.99662 * 175.26039 * 12 10 9 15 15 H 1.48501 * 109.47210 * 89.99623 * 14 12 10 16 16 H 1.48501 * 109.47125 * 209.99674 * 14 12 10 17 17 H 1.48503 * 109.47002 * 329.99828 * 14 12 10 18 18 C 1.53000 * 117.50021 * 279.72139 * 9 8 7 19 19 C 1.53002 * 117.49542 * 211.05767 * 9 8 7 20 20 C 1.41495 * 106.97929 * 0.26135 * 4 3 2 21 21 C 1.35062 * 124.88418 * 179.97438 * 2 1 3 22 22 Cl 1.73602 * 126.40382 * 0.02562 * 21 2 1 23 23 H 1.08994 * 109.47674 * 90.02225 * 1 2 3 24 24 H 1.09006 * 109.47169 * 210.02426 * 1 2 3 25 25 H 1.08999 * 109.47517 * 330.02251 * 1 2 3 26 26 H 0.96993 * 120.00361 * 354.53358 * 7 5 4 27 27 H 1.08998 * 109.46959 * 303.70710 * 8 7 5 28 28 H 1.08994 * 109.47516 * 63.71353 * 8 7 5 29 29 H 0.97000 * 120.00451 * 185.06222 * 13 12 10 30 30 H 1.08997 * 117.50078 * 359.97438 * 18 9 8 31 31 H 1.08997 * 117.49987 * 145.02939 * 18 9 8 32 32 H 1.09002 * 117.50077 * 214.97980 * 19 9 8 33 33 H 1.08997 * 117.50384 * 359.97438 * 19 9 8 34 34 H 1.07998 * 127.26444 * 179.73791 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7177 -0.0006 5 6 4.6266 1.6417 -0.0002 6 8 5.7562 1.2044 -0.1049 7 7 4.4263 2.9688 0.1217 8 6 5.5716 3.8744 0.2424 9 6 5.0708 5.3038 0.4592 10 6 4.3372 5.5462 1.7531 11 1 3.2595 5.4829 1.7827 12 6 5.0419 5.8488 2.8989 13 7 6.3568 5.8343 2.8854 14 14 4.1287 6.2791 4.4707 15 1 3.8756 5.0412 5.2509 16 1 4.9500 7.2150 5.2799 17 1 2.8346 6.9233 4.1307 18 6 4.6079 6.0847 -0.7724 19 6 5.9302 6.4443 -0.0900 20 6 3.5285 -0.6962 -0.0071 21 6 2.2374 -1.1079 0.0005 22 17 1.6805 -2.7522 0.0006 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5135 26 1 3.5239 3.3244 0.1294 27 1 6.1860 3.5721 1.0904 28 1 6.1660 3.8322 -0.6703 29 1 6.8519 5.9747 3.7076 30 1 4.6606 5.5803 -1.7372 31 1 3.7731 6.7741 -0.6467 32 1 5.9646 7.3701 0.4843 33 1 6.8525 6.1764 -0.6053 34 1 4.4126 -1.3165 -0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831069363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = 42.092504 kcal Electronic energy + Delta-G solvation = -19532.234925 eV Core-core repulsion = 16300.010048 eV Total energy + Delta-G solvation = -3232.224877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.83457 -40.44930 -38.44621 -37.99288 -35.06983 -34.53637 -33.94777 -31.67700 -29.20620 -27.81951 -26.95877 -24.00632 -22.92466 -22.63245 -21.30556 -20.93238 -19.25074 -18.07300 -17.60428 -17.53721 -16.70333 -16.55537 -16.07587 -15.61766 -15.33392 -15.14965 -14.75260 -14.33713 -13.92322 -13.66028 -13.53413 -13.45002 -13.11820 -12.89446 -12.84438 -12.78112 -12.35706 -12.02532 -11.93637 -11.54438 -11.24846 -10.87582 -10.44176 -10.36610 -10.13588 -10.06253 -9.82939 -8.08704 -6.21587 0.34960 0.37024 0.77426 1.41686 1.43875 1.50854 1.52440 2.22541 2.38522 2.43962 3.15067 3.19525 3.52203 3.87992 4.13609 4.25353 4.30169 4.32901 4.45873 4.55811 4.61009 4.66805 4.72177 4.98661 5.02680 5.09309 5.29099 5.40990 5.53242 5.60470 5.67960 5.78710 6.38064 6.47452 6.77122 6.85260 7.21945 7.47606 8.98954 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.004239 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.630635 B = 6603.984784 C = 7100.970922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.265 5.265 3 N -0.245 5.245 4 C -0.026 4.026 5 C 0.592 3.408 6 O -0.579 6.579 7 N -0.684 5.684 8 C 0.177 3.823 9 C 0.002 3.998 10 C -0.503 4.503 11 H 0.060 0.940 12 C 0.026 3.974 13 N -0.907 5.907 14 Si 0.947 3.053 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.264 1.264 18 C -0.178 4.178 19 C -0.153 4.153 20 C -0.168 4.168 21 C 0.054 3.946 22 Cl 0.031 6.969 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.412 0.588 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.259 0.741 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.424 -14.073 -6.496 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.056 5.056 3 N -0.083 5.083 4 C -0.184 4.184 5 C 0.377 3.623 6 O -0.458 6.458 7 N -0.332 5.332 8 C 0.053 3.947 9 C 0.001 3.999 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.175 4.175 13 N -0.544 5.544 14 Si 0.774 3.226 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.215 4.215 19 C -0.191 4.191 20 C -0.197 4.197 21 C -0.097 4.097 22 Cl 0.059 6.941 23 H 0.131 0.869 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.247 0.753 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.365 -13.466 -6.447 20.719 hybrid contribution 0.167 -0.311 1.114 1.169 sum -14.199 -13.778 -5.332 20.490 Atomic orbital electron populations 1.22790 0.69722 1.07638 1.07007 1.45956 1.09601 1.00854 1.49221 1.73701 1.02805 1.12873 1.18942 1.21631 0.90831 0.94107 1.11808 1.17185 0.86609 0.81985 0.76536 1.90729 1.24268 1.77797 1.53014 1.45718 1.11515 1.05217 1.70729 1.20708 0.86635 0.89355 0.97965 1.19056 1.00210 0.87898 0.92741 1.20633 0.92695 1.47815 0.92970 0.92228 1.25665 0.95429 0.94755 1.01613 1.70086 1.06737 1.49776 1.27825 0.85721 0.79002 0.77899 0.80026 1.20851 1.21266 1.18793 1.23022 0.97688 1.04580 0.96221 1.22425 0.93319 1.00288 1.03099 1.21584 0.96739 0.93137 1.08226 1.21888 0.90555 0.84919 1.12311 1.98405 1.89243 1.09289 1.97185 0.86895 0.86192 0.86833 0.75264 0.94558 0.93823 0.93175 0.89238 0.89606 0.91686 0.90823 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 11.14 127.77 1.42 2.14 16 2 N -0.26 -5.85 3.70 -359.17 -1.33 -7.18 16 3 N -0.24 -7.29 11.68 -48.18 -0.56 -7.85 16 4 C -0.03 -0.88 7.13 42.46 0.30 -0.58 16 5 C 0.59 24.66 7.82 86.75 0.68 25.34 16 6 O -0.58 -27.46 16.94 -3.96 -0.07 -27.53 16 7 N -0.68 -28.73 5.46 -466.09 -2.54 -31.27 16 8 C 0.18 8.37 5.51 86.38 0.48 8.84 16 9 C 0.00 0.08 1.38 -52.92 -0.07 0.01 16 10 C -0.50 -26.32 8.71 25.60 0.22 -26.10 16 11 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 12 C 0.03 1.41 5.39 84.65 0.46 1.86 16 13 N -0.91 -51.76 12.85 21.44 0.28 -51.48 16 14 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 19 C -0.15 -7.01 9.36 30.62 0.29 -6.73 16 20 C -0.17 -4.82 10.80 22.44 0.24 -4.58 16 21 C 0.05 1.22 7.44 83.57 0.62 1.84 16 22 Cl 0.03 0.48 28.67 -2.72 -0.08 0.40 16 23 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.12 0.73 7.71 -2.38 -0.02 0.72 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.41 16.20 8.18 -92.71 -0.76 15.44 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.99 8.09 -2.39 -0.02 1.97 16 29 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 30 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.18 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -66.84 319.97 3.04 -63.80 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.37 Total: 21.01 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.94 Total: -4.84 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -4.16 Total: -97.79 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -66.84 3.04 -63.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831069363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.894 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds