Wall clock time and date at job start Tue Mar 31 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34763 * 117.00116 * 2 1 4 4 O 1.21535 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.47232 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.47058 * 127.19922 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94750 * 180.02562 * 6 5 3 8 8 O 1.34216 * 109.14810 * 0.22775 * 7 6 5 9 9 C 1.33632 * 110.92147 * 359.60677 * 8 7 6 10 10 C 1.50698 * 125.80578 * 180.15793 * 9 8 7 11 11 N 1.46500 * 109.47096 * 270.26742 * 10 9 8 12 12 C 1.36942 * 119.99999 * 90.00502 * 11 10 9 13 13 H 1.08001 * 119.99540 * 355.69879 * 12 11 10 14 14 C 1.38808 * 120.00125 * 175.70443 * 12 11 10 15 15 N 1.31622 * 120.00206 * 33.87249 * 14 12 11 16 16 Si 1.86798 * 119.99721 * 213.88204 * 14 12 11 17 17 H 1.48497 * 109.47645 * 84.99472 * 16 14 12 18 18 H 1.48500 * 109.47206 * 204.99489 * 16 14 12 19 19 H 1.48501 * 109.47189 * 324.99535 * 16 14 12 20 20 C 1.46504 * 120.00300 * 270.00453 * 11 10 9 21 21 C 1.50701 * 109.47259 * 95.84683 * 20 11 10 22 22 O 1.20827 * 119.99871 * 0.02562 * 21 20 11 23 23 O 1.34223 * 119.99938 * 179.97438 * 21 20 11 24 24 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47533 * 300.00105 * 1 2 3 26 26 H 1.08998 * 109.47321 * 60.00441 * 1 2 3 27 27 H 1.08000 * 127.02987 * 359.97438 * 6 5 3 28 28 H 1.08002 * 125.42787 * 179.97438 * 7 6 5 29 29 H 1.08992 * 109.47248 * 30.26859 * 10 9 8 30 30 H 1.09004 * 109.46874 * 150.27460 * 10 9 8 31 31 H 0.97000 * 119.99786 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.47247 * 215.84744 * 20 11 10 33 33 H 1.08997 * 109.47015 * 335.84783 * 20 11 10 34 34 H 0.96703 * 117.00384 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4833 0.1546 0.0017 7 6 5.7065 0.7057 0.0024 8 8 5.5871 2.0425 0.0069 9 6 4.3013 2.4068 0.0006 10 6 3.7862 3.8230 -0.0003 11 7 3.6182 4.2824 1.3806 12 6 4.6541 4.9026 2.0267 13 1 5.6161 4.9911 1.5438 14 6 4.4678 5.4173 3.3023 15 7 3.6564 4.8127 4.1440 16 14 5.3685 6.9684 3.8242 17 1 4.5983 8.1597 3.3853 18 1 5.5078 6.9862 5.3026 19 1 6.7157 6.9924 3.1998 20 6 2.3419 4.0784 2.0703 21 6 2.4131 2.8204 2.8970 22 8 3.4262 2.1620 2.9092 23 8 1.3514 2.4318 3.6206 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 4.2446 -0.8987 0.0027 28 1 6.6388 0.1604 0.0037 29 1 4.4988 4.4684 -0.5138 30 1 2.8260 3.8599 -0.5149 31 1 3.5260 5.1726 5.0353 32 1 2.1402 4.9295 2.7207 33 1 1.5425 3.9853 1.3353 34 1 1.4444 1.6180 4.1346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831457823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:08 Heat of formation + Delta-G solvation = -144.247812 kcal Electronic energy + Delta-G solvation = -23869.012200 eV Core-core repulsion = 20155.705084 eV Total energy + Delta-G solvation = -3713.307115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38259 -41.09461 -40.53046 -37.85120 -37.25911 -36.26858 -34.06970 -33.57821 -31.37937 -29.33650 -28.84521 -27.34267 -24.88896 -23.94729 -22.46601 -21.86284 -20.78453 -19.10412 -18.80310 -18.47966 -17.86100 -17.70310 -17.06880 -17.05494 -16.60419 -16.53176 -15.97905 -15.48412 -15.31442 -15.04709 -14.26118 -14.18649 -13.99905 -13.71260 -13.54307 -13.39964 -12.94309 -12.91292 -12.54761 -12.37139 -12.14437 -11.95512 -11.93706 -11.71995 -11.47546 -11.12720 -10.70640 -10.47704 -9.59147 -9.24379 -8.10936 -5.27149 0.27862 1.16496 1.48988 1.53058 1.60351 1.70412 2.03252 2.14872 2.19655 2.45913 2.74001 3.12790 3.53359 3.74098 3.93628 4.06632 4.33110 4.35535 4.37364 4.61417 4.68080 4.71762 4.75200 4.84675 5.07947 5.12742 5.15399 5.37422 5.50385 5.63722 6.02653 6.09645 6.21194 6.80079 6.89560 7.53368 7.70831 8.03455 8.99899 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.007636 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.942680 B = 3666.014169 C = 4409.419916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.538 3.462 4 O -0.527 6.527 5 C -0.263 4.263 6 C -0.184 4.184 7 C -0.048 4.048 8 O -0.184 6.184 9 C 0.086 3.914 10 C 0.199 3.801 11 N -0.557 5.557 12 C -0.274 4.274 13 H 0.086 0.914 14 C -0.037 4.037 15 N -0.916 5.916 16 Si 0.969 3.031 17 H -0.277 1.277 18 H -0.302 1.302 19 H -0.272 1.272 20 C 0.181 3.819 21 C 0.486 3.514 22 O -0.545 6.545 23 O -0.538 6.538 24 H 0.135 0.865 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.175 0.825 28 H 0.244 0.756 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -8.461 -8.859 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C 0.386 3.614 4 O -0.419 6.419 5 C -0.267 4.267 6 C -0.203 4.203 7 C -0.113 4.113 8 O -0.079 6.079 9 C 0.029 3.971 10 C 0.072 3.928 11 N -0.275 5.275 12 C -0.402 4.402 13 H 0.104 0.896 14 C -0.233 4.233 15 N -0.560 5.560 16 Si 0.797 3.203 17 H -0.203 1.203 18 H -0.229 1.229 19 H -0.197 1.197 20 C 0.053 3.947 21 C 0.327 3.673 22 O -0.434 6.434 23 O -0.350 6.350 24 H 0.153 0.847 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.192 0.808 28 H 0.260 0.740 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.391 -7.732 -8.924 12.285 hybrid contribution 0.308 -0.422 1.424 1.517 sum -3.083 -8.154 -7.500 11.500 Atomic orbital electron populations 1.23552 0.74402 1.05682 1.02576 1.86527 1.25175 1.31811 1.84395 1.20119 0.87773 0.81587 0.71899 1.90747 1.66924 1.36178 1.48097 1.20284 0.90841 0.94820 1.20757 1.23009 0.91216 0.99714 1.06329 1.24598 1.01337 0.79486 1.05915 1.83829 1.27667 1.25766 1.70608 1.25038 0.80329 0.98910 0.92830 1.20293 1.01039 0.84489 0.86958 1.44842 1.10858 1.62201 1.09639 1.19601 0.93749 1.27238 0.99614 0.89576 1.25494 1.00648 1.01862 0.95282 1.70194 1.43011 1.37355 1.05450 0.85266 0.78458 0.80826 0.75787 1.20308 1.22948 1.19706 1.20800 0.88190 0.91917 0.93819 1.25241 0.79285 0.86260 0.76498 1.90504 1.32478 1.56076 1.64297 1.84579 1.44295 1.46535 1.59560 0.84721 0.92694 0.91262 0.80778 0.74036 0.88765 0.87314 0.93580 0.88801 0.89553 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.57 113.37 1.20 1.91 16 2 O -0.36 -11.71 10.48 -56.74 -0.59 -12.30 16 3 C 0.54 20.65 7.63 70.19 0.54 21.18 16 4 O -0.53 -21.27 11.89 19.72 0.23 -21.04 16 5 C -0.26 -10.41 5.54 -19.01 -0.11 -10.51 16 6 C -0.18 -6.08 11.05 23.65 0.26 -5.82 16 7 C -0.05 -1.51 12.03 66.89 0.80 -0.71 16 8 O -0.18 -7.27 10.52 4.64 0.05 -7.22 16 9 C 0.09 3.59 6.22 25.28 0.16 3.75 16 10 C 0.20 8.26 5.72 85.63 0.49 8.75 16 11 N -0.56 -27.46 2.06 -710.69 -1.47 -28.93 16 12 C -0.27 -14.64 9.47 84.03 0.80 -13.85 16 13 H 0.09 4.55 8.02 -2.91 -0.02 4.52 16 14 C -0.04 -1.98 4.87 84.86 0.41 -1.56 16 15 N -0.92 -52.15 9.28 21.65 0.20 -51.95 16 16 Si 0.97 43.79 29.66 68.60 2.04 45.83 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 C 0.18 8.94 5.11 85.63 0.44 9.37 16 21 C 0.49 24.58 5.83 71.24 0.42 25.00 16 22 O -0.55 -30.63 15.44 21.96 0.34 -30.29 16 23 O -0.54 -23.62 13.42 -51.35 -0.69 -24.31 16 24 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.24 4.90 8.06 -2.91 -0.02 4.88 16 29 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 30 H 0.11 4.21 6.20 -2.39 -0.01 4.20 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.09 5.00 6.13 -2.39 -0.01 4.99 16 33 H 0.09 3.96 5.96 -2.39 -0.01 3.94 16 34 H 0.40 14.04 9.10 -74.06 -0.67 13.36 16 Total: -1.00 -72.30 300.43 6.00 -66.31 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.48 Total: 26.40 kcal Atomic # 6 Polarization: 32.10 SS G_CDS: 5.40 Total: 37.51 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.27 Total: -80.88 kcal Atomic # 8 Polarization: -94.50 SS G_CDS: -0.66 Total: -95.16 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.04 Total: 45.83 kcal Total: -72.30 6.00 -66.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831457823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.943 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds