Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.47195 * 269.99821 * 3 2 1 5 5 H 1.48504 * 109.46745 * 29.99869 * 3 2 1 6 6 H 1.48501 * 109.46945 * 149.99515 * 3 2 1 7 7 C 1.38809 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00254 * 207.82378 * 7 2 1 9 9 N 1.36942 * 120.00303 * 27.82349 * 7 2 1 10 10 C 1.46503 * 119.99596 * 359.54357 * 9 7 2 11 11 C 1.50705 * 109.46716 * 276.49077 * 10 9 7 12 12 O 1.20824 * 120.00033 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99477 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00257 * 179.54033 * 9 7 2 15 15 C 1.52991 * 109.46868 * 90.00183 * 14 9 7 16 16 H 1.09001 * 109.47613 * 304.99699 * 15 14 9 17 17 O 1.42901 * 109.47801 * 65.00058 * 15 14 9 18 18 C 1.50701 * 109.47157 * 184.99991 * 15 14 9 19 19 C 1.38246 * 119.97786 * 99.99692 * 18 15 14 20 20 C 1.38197 * 120.02970 * 180.02562 * 19 18 15 21 21 C 1.38463 * 119.96935 * 0.23114 * 20 19 18 22 22 F 1.35099 * 120.02326 * 179.72362 * 21 20 19 23 23 C 1.38461 * 119.94975 * 359.49793 * 21 20 19 24 24 C 1.38191 * 119.97446 * 0.52048 * 23 21 20 25 25 H 0.97002 * 120.00326 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47143 * 36.48310 * 10 9 7 27 27 H 1.08997 * 109.47340 * 156.49181 * 10 9 7 28 28 H 0.96706 * 116.99227 * 179.97438 * 13 11 10 29 29 H 1.08999 * 109.47015 * 329.99828 * 14 9 7 30 30 H 1.09004 * 109.46701 * 210.00053 * 14 9 7 31 31 H 0.96698 * 113.99767 * 59.99378 * 17 15 14 32 32 H 1.08001 * 119.98280 * 0.02686 * 19 18 15 33 33 H 1.07995 * 120.01248 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.00965 * 180.25494 * 23 21 20 35 35 H 1.07998 * 119.99037 * 179.74621 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 2.9966 -1.2560 0.4371 9 7 1.4443 -2.3198 -0.5525 10 6 0.1023 -2.2491 -1.1358 11 6 -0.9276 -2.4039 -0.0464 12 8 -0.5765 -2.5570 1.0995 13 8 -2.2349 -2.3716 -0.3494 14 6 2.1809 -3.5861 -0.5609 15 6 1.8637 -4.3691 0.7146 16 1 2.0769 -3.7481 1.5847 17 8 0.4824 -4.7353 0.7178 18 6 2.7131 -5.6129 0.7650 19 6 3.8547 -5.6386 1.5443 20 6 4.6347 -6.7785 1.5909 21 6 4.2750 -7.8934 0.8527 22 9 5.0398 -9.0063 0.8930 23 6 3.1285 -7.8683 0.0769 24 6 2.3503 -6.7273 0.0316 25 1 -0.4851 0.8400 -0.0004 26 1 -0.0303 -1.2849 -1.6266 27 1 -0.0189 -3.0486 -1.8666 28 1 -2.8578 -2.4755 0.3830 29 1 3.2510 -3.3837 -0.6064 30 1 1.8848 -4.1728 -1.4306 31 1 0.2208 -5.2898 -0.0299 32 1 4.1369 -4.7676 2.1171 33 1 5.5266 -6.7982 2.1995 34 1 2.8448 -8.7388 -0.4960 35 1 1.4581 -6.7061 -0.5766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -126.710846 kcal Electronic energy + Delta-G solvation = -22657.335703 eV Core-core repulsion = 18957.161837 eV Total energy + Delta-G solvation = -3700.173866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.88282 -39.44743 -38.41638 -36.69179 -35.06236 -34.05887 -31.70539 -31.10565 -30.75233 -28.02923 -26.57340 -24.03722 -23.00015 -21.95360 -20.73438 -19.93861 -17.81540 -17.02500 -16.52019 -16.40490 -16.26890 -15.58373 -15.18336 -15.08468 -14.70656 -14.30595 -14.03385 -13.91115 -13.51673 -13.35610 -13.18618 -12.71818 -12.64350 -12.11975 -11.60821 -11.42878 -11.11412 -11.00185 -10.86901 -10.60183 -10.53028 -10.25672 -10.02763 -9.81377 -9.61675 -9.09409 -8.87399 -8.51961 -8.37610 -7.16997 -5.99513 -3.20087 1.17240 1.25250 3.34248 3.41775 3.43571 3.61356 4.22832 4.26732 4.33984 4.70163 4.72809 4.84121 4.88944 5.03226 5.20880 5.30506 5.39648 5.51094 5.76644 5.90935 5.94203 6.05245 6.12175 6.27408 6.33505 6.35081 6.47997 6.82588 6.93202 7.09837 7.16127 7.65685 8.07667 8.13301 8.22026 8.97586 9.60516 9.80204 10.07045 11.11949 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.004979 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.066704 B = 5622.611601 C = 6537.400516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.083 0.917 9 N -0.563 5.563 10 C 0.191 3.809 11 C 0.479 3.521 12 O -0.493 6.493 13 O -0.552 6.552 14 C 0.126 3.874 15 C 0.122 3.878 16 H 0.109 0.891 17 O -0.526 6.526 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.151 4.151 21 C 0.081 3.919 22 F -0.146 7.146 23 C -0.151 4.151 24 C -0.089 4.089 25 H 0.258 0.742 26 H 0.110 0.890 27 H 0.045 0.955 28 H 0.376 0.624 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.348 0.652 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -12.019 -2.319 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.282 5.282 10 C 0.062 3.938 11 C 0.318 3.682 12 O -0.377 6.377 13 O -0.362 6.362 14 C -0.002 4.002 15 C 0.060 3.940 16 H 0.127 0.873 17 O -0.328 6.328 18 C -0.110 4.110 19 C -0.102 4.102 20 C -0.170 4.170 21 C 0.062 3.938 22 F -0.125 7.125 23 C -0.170 4.170 24 C -0.107 4.107 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.151 -11.508 -1.763 12.361 hybrid contribution 0.115 0.280 0.376 0.483 sum 4.267 -11.229 -1.387 12.092 Atomic orbital electron populations 1.69871 1.05328 1.25973 1.53166 1.24717 0.95171 0.98353 1.01133 0.86221 0.79216 0.83380 0.77682 1.21335 1.21992 1.20540 1.19283 0.99032 0.85431 1.34442 0.89935 1.44284 1.12016 1.05201 1.66704 1.20542 0.81198 1.01684 0.90394 1.24789 0.80364 0.70650 0.92436 1.90515 1.80403 1.44235 1.22497 1.84622 1.20077 1.87181 1.44364 1.21632 0.97239 0.87338 0.94021 1.21871 0.79887 0.89530 1.02728 0.87309 1.86948 1.24557 1.71881 1.49441 1.21158 0.96682 0.97291 0.95865 1.20951 0.93939 0.97460 0.97872 1.21119 1.01755 0.92847 1.01248 1.17689 0.91795 0.83587 1.00747 1.91468 1.74707 1.50894 1.95449 1.21056 0.94880 0.99946 1.01071 1.20760 0.99284 0.91987 0.98681 0.93108 0.87213 0.93666 0.76889 0.91751 0.93436 0.80722 0.84839 0.85029 0.85080 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 8.76 55.49 0.49 -24.29 16 2 C 0.00 0.11 4.98 -17.43 -0.09 0.02 16 3 Si 0.91 21.00 29.64 -169.99 -5.04 15.96 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.25 -6.50 9.50 -15.06 -0.14 -6.64 16 8 H 0.08 2.07 7.97 -52.49 -0.42 1.65 16 9 N -0.56 -12.83 2.05 -174.61 -0.36 -13.18 16 10 C 0.19 4.28 5.46 -5.19 -0.03 4.25 16 11 C 0.48 11.36 5.34 36.01 0.19 11.55 16 12 O -0.49 -13.25 14.31 -26.25 -0.38 -13.63 16 13 O -0.55 -11.48 13.42 -39.26 -0.53 -12.01 16 14 C 0.13 2.27 5.34 -4.05 -0.02 2.25 16 15 C 0.12 2.14 3.20 -27.89 -0.09 2.05 16 16 H 0.11 2.27 8.00 -51.93 -0.42 1.86 16 17 O -0.53 -9.76 9.57 -57.82 -0.55 -10.31 16 18 C -0.11 -1.55 4.97 -104.61 -0.52 -2.07 16 19 C -0.08 -1.12 9.67 -39.59 -0.38 -1.51 16 20 C -0.15 -1.86 10.03 -39.51 -0.40 -2.26 16 21 C 0.08 1.03 7.30 -39.42 -0.29 0.75 16 22 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 23 C -0.15 -1.78 10.03 -39.52 -0.40 -2.18 16 24 C -0.09 -1.10 9.32 -39.59 -0.37 -1.47 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.11 2.72 6.23 -51.93 -0.32 2.39 16 27 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 28 H 0.38 6.48 9.10 45.56 0.41 6.90 16 29 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 31 H 0.35 5.07 7.50 45.56 0.34 5.41 16 32 H 0.13 1.67 8.04 -52.49 -0.42 1.25 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.33 6.78 -52.49 -0.36 0.97 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -31.71 303.24 -6.68 -38.39 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -2.39 Total: 11.62 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.53 Total: 4.74 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.13 Total: -37.47 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.46 Total: -35.95 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.04 Total: 15.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.71 -6.68 -38.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.324 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds