Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.47195 * 269.99821 * 3 2 1 5 5 H 1.48504 * 109.46745 * 29.99869 * 3 2 1 6 6 H 1.48501 * 109.46945 * 149.99515 * 3 2 1 7 7 C 1.38809 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00254 * 207.82378 * 7 2 1 9 9 N 1.36942 * 120.00303 * 27.82349 * 7 2 1 10 10 C 1.46503 * 119.99596 * 359.54357 * 9 7 2 11 11 C 1.50705 * 109.46716 * 276.49077 * 10 9 7 12 12 O 1.20824 * 120.00033 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99477 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00257 * 179.54033 * 9 7 2 15 15 C 1.52991 * 109.46868 * 90.00183 * 14 9 7 16 16 H 1.09001 * 109.47613 * 304.99699 * 15 14 9 17 17 O 1.42901 * 109.47801 * 65.00058 * 15 14 9 18 18 C 1.50701 * 109.47157 * 184.99991 * 15 14 9 19 19 C 1.38246 * 119.97786 * 99.99692 * 18 15 14 20 20 C 1.38197 * 120.02970 * 180.02562 * 19 18 15 21 21 C 1.38463 * 119.96935 * 0.23114 * 20 19 18 22 22 F 1.35099 * 120.02326 * 179.72362 * 21 20 19 23 23 C 1.38461 * 119.94975 * 359.49793 * 21 20 19 24 24 C 1.38191 * 119.97446 * 0.52048 * 23 21 20 25 25 H 0.97002 * 120.00326 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47143 * 36.48310 * 10 9 7 27 27 H 1.08997 * 109.47340 * 156.49181 * 10 9 7 28 28 H 0.96706 * 116.99227 * 179.97438 * 13 11 10 29 29 H 1.08999 * 109.47015 * 329.99828 * 14 9 7 30 30 H 1.09004 * 109.46701 * 210.00053 * 14 9 7 31 31 H 0.96698 * 113.99767 * 59.99378 * 17 15 14 32 32 H 1.08001 * 119.98280 * 0.02686 * 19 18 15 33 33 H 1.07995 * 120.01248 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.00965 * 180.25494 * 23 21 20 35 35 H 1.07998 * 119.99037 * 179.74621 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 2.9966 -1.2560 0.4371 9 7 1.4443 -2.3198 -0.5525 10 6 0.1023 -2.2491 -1.1358 11 6 -0.9276 -2.4039 -0.0464 12 8 -0.5765 -2.5570 1.0995 13 8 -2.2349 -2.3716 -0.3494 14 6 2.1809 -3.5861 -0.5609 15 6 1.8637 -4.3691 0.7146 16 1 2.0769 -3.7481 1.5847 17 8 0.4824 -4.7353 0.7178 18 6 2.7131 -5.6129 0.7650 19 6 3.8547 -5.6386 1.5443 20 6 4.6347 -6.7785 1.5909 21 6 4.2750 -7.8934 0.8527 22 9 5.0398 -9.0063 0.8930 23 6 3.1285 -7.8683 0.0769 24 6 2.3503 -6.7273 0.0316 25 1 -0.4851 0.8400 -0.0004 26 1 -0.0303 -1.2849 -1.6266 27 1 -0.0189 -3.0486 -1.8666 28 1 -2.8578 -2.4755 0.3830 29 1 3.2510 -3.3837 -0.6064 30 1 1.8848 -4.1728 -1.4306 31 1 0.2208 -5.2898 -0.0299 32 1 4.1369 -4.7676 2.1171 33 1 5.5266 -6.7982 2.1995 34 1 2.8448 -8.7388 -0.4960 35 1 1.4581 -6.7061 -0.5766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -147.251290 kcal Electronic energy + Delta-G solvation = -22658.226404 eV Core-core repulsion = 18957.161837 eV Total energy + Delta-G solvation = -3701.064566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.87516 -40.65834 -40.11123 -38.11184 -36.69319 -35.89377 -33.38934 -32.24239 -31.94934 -29.57942 -28.28184 -25.55132 -24.01205 -23.43796 -22.02764 -21.68170 -18.93710 -18.66690 -18.23562 -17.80872 -17.41130 -16.85493 -16.79471 -16.56520 -15.98877 -15.81965 -15.70938 -15.15837 -15.10120 -14.71808 -14.42832 -13.94523 -13.78160 -13.44745 -13.24981 -13.20896 -12.80479 -12.53417 -12.27137 -12.11297 -12.00052 -11.91169 -11.84307 -11.57024 -11.22490 -10.62410 -10.36108 -10.04716 -9.59073 -8.95061 -7.96104 -5.15556 0.14750 0.29487 1.49573 1.52511 1.59309 2.39276 2.51295 2.61046 2.97212 3.27917 3.29025 3.50064 3.74051 3.81094 3.96085 4.01706 4.31686 4.34400 4.46844 4.56835 4.71141 4.93784 4.98050 5.01933 5.13339 5.16263 5.28339 5.34252 5.43038 5.65247 5.67411 5.93603 6.21209 6.42295 7.02093 7.06464 7.75657 8.02470 8.19366 9.13671 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.004979 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.066704 B = 5622.611601 C = 6537.400516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.047 4.047 3 Si 0.962 3.038 4 H -0.282 1.282 5 H -0.306 1.306 6 H -0.275 1.275 7 C -0.253 4.253 8 H 0.080 0.920 9 N -0.577 5.577 10 C 0.190 3.810 11 C 0.483 3.517 12 O -0.531 6.531 13 O -0.546 6.546 14 C 0.123 3.877 15 C 0.139 3.861 16 H 0.065 0.935 17 O -0.548 6.548 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.151 4.151 21 C 0.074 3.926 22 F -0.148 7.148 23 C -0.146 4.146 24 C -0.084 4.084 25 H 0.249 0.751 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.393 0.607 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.366 0.634 32 H 0.133 0.867 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.401 -13.792 -3.356 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.242 4.242 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.234 1.234 6 H -0.200 1.200 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.296 5.296 10 C 0.061 3.939 11 C 0.324 3.676 12 O -0.418 6.418 13 O -0.358 6.358 14 C -0.003 4.003 15 C 0.078 3.922 16 H 0.083 0.917 17 O -0.352 6.352 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.170 4.170 21 C 0.055 3.945 22 F -0.126 7.126 23 C -0.165 4.165 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.250 0.750 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.213 0.787 32 H 0.151 0.849 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.762 -13.324 -2.821 14.428 hybrid contribution -0.070 0.690 0.710 0.992 sum 4.692 -12.634 -2.111 13.641 Atomic orbital electron populations 1.70009 1.06263 1.25565 1.55356 1.25329 0.95825 1.00801 1.02247 0.85339 0.78026 0.80015 0.77508 1.20868 1.23392 1.19956 1.19532 0.98935 0.86715 1.33097 0.90170 1.44395 1.12439 1.06344 1.66423 1.20501 0.80950 1.01806 0.90605 1.25006 0.81102 0.69429 0.92086 1.90503 1.81152 1.46137 1.23964 1.84559 1.19511 1.86640 1.45060 1.21816 0.96895 0.86032 0.95534 1.21338 0.80147 0.90433 1.00319 0.91709 1.86905 1.25128 1.72518 1.50698 1.20861 0.96777 0.96825 0.97726 1.21028 0.94080 0.98043 0.98058 1.21272 1.02156 0.92293 1.01279 1.17911 0.92150 0.83547 1.00882 1.91470 1.74804 1.50910 1.95458 1.21327 0.94084 1.00516 1.00571 1.20969 0.99907 0.91176 0.98145 0.94150 0.89676 0.89743 0.75009 0.91493 0.90256 0.78716 0.84914 0.83274 0.82493 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.85 8.76 21.65 0.19 -51.66 16 2 C -0.05 -2.53 4.98 84.86 0.42 -2.11 16 3 Si 0.96 43.83 29.64 68.60 2.03 45.86 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.25 -13.04 9.50 84.03 0.80 -12.25 16 8 H 0.08 4.06 7.97 -2.91 -0.02 4.03 16 9 N -0.58 -25.93 2.05 -706.34 -1.45 -27.38 16 10 C 0.19 8.38 5.46 85.63 0.47 8.84 16 11 C 0.48 22.70 5.34 71.24 0.38 23.08 16 12 O -0.53 -28.73 14.31 29.14 0.42 -28.31 16 13 O -0.55 -22.17 13.42 -51.42 -0.69 -22.86 16 14 C 0.12 4.29 5.34 86.38 0.46 4.75 16 15 C 0.14 4.80 3.20 29.85 0.10 4.89 16 16 H 0.06 2.80 8.00 -2.39 -0.02 2.78 16 17 O -0.55 -19.70 9.57 -127.38 -1.22 -20.92 16 18 C -0.12 -3.26 4.97 -19.86 -0.10 -3.36 16 19 C -0.09 -2.41 9.67 22.26 0.22 -2.20 16 20 C -0.15 -3.45 10.03 22.31 0.22 -3.23 16 21 C 0.07 1.70 7.30 22.38 0.16 1.86 16 22 F -0.15 -3.45 17.27 44.97 0.78 -2.68 16 23 C -0.15 -2.97 10.03 22.31 0.22 -2.75 16 24 C -0.08 -1.82 9.32 22.26 0.21 -1.62 16 25 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 26 H 0.09 4.22 6.23 -2.39 -0.01 4.20 16 27 H 0.08 2.98 7.82 -2.39 -0.02 2.96 16 28 H 0.39 13.12 9.10 -74.05 -0.67 12.45 16 29 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 30 H 0.08 2.24 7.85 -2.38 -0.02 2.22 16 31 H 0.37 9.76 7.50 -74.06 -0.56 9.20 16 32 H 0.13 3.34 8.04 -2.91 -0.02 3.31 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.15 2.52 6.78 -2.91 -0.02 2.50 16 Total: -1.00 -68.40 303.24 3.54 -64.86 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.08 Total: 27.16 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 3.56 Total: 15.92 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.26 Total: -79.04 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -1.49 Total: -72.09 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.40 3.54 -64.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.389 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds