Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35351 * 117.00128 * 2 1 4 4 C 1.36143 * 125.57184 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.19099 * 179.97438 * 4 3 2 6 6 C 1.37953 * 106.66941 * 359.97438 * 5 4 3 7 7 C 1.41617 * 126.03623 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00350 * 0.02562 * 7 6 5 9 9 O 1.34984 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.42906 * 116.99829 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99670 * 359.97438 * 11 10 9 13 13 N 1.34767 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99951 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47474 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00214 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99945 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00057 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47307 * 90.00174 * 19 17 15 21 21 H 1.48506 * 109.46890 * 210.00185 * 19 17 15 22 22 H 1.48499 * 109.46890 * 329.99775 * 19 17 15 23 23 O 1.34000 * 125.56651 * 359.97438 * 3 2 1 24 24 H 1.09000 * 109.46865 * 60.00126 * 1 2 3 25 25 H 1.08998 * 109.46541 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47152 * 299.99798 * 1 2 3 27 27 H 1.07997 * 126.40632 * 0.02562 * 4 3 2 28 28 H 1.07999 * 126.66267 * 179.73985 * 5 4 3 29 29 H 1.08999 * 109.47125 * 300.00387 * 10 9 7 30 30 H 1.08996 * 109.46930 * 60.00077 * 10 9 7 31 31 H 0.97002 * 120.00587 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47214 * 300.00043 * 14 13 11 33 33 H 1.09000 * 109.47187 * 59.99535 * 14 13 11 34 34 H 0.97007 * 120.00108 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 3.3898 1.4089 0.0005 5 6 3.5994 2.7914 -0.0003 6 6 2.3521 3.3808 -0.0019 7 6 2.0880 4.7721 -0.0026 8 8 3.0099 5.5665 -0.0023 9 8 0.8136 5.2172 -0.0036 10 6 0.6210 6.6332 -0.0048 11 6 -0.8546 6.9394 -0.0052 12 8 -1.6616 6.0342 -0.0049 13 7 -1.2772 8.2191 -0.0069 14 6 -2.7116 8.5168 -0.0078 15 6 -2.9148 10.0100 -0.0103 16 1 -2.0608 10.6712 -0.0106 17 6 -4.1909 10.5321 -0.0110 18 7 -4.3681 11.8353 -0.0126 19 14 -5.6680 9.3886 -0.0096 20 1 -6.0595 9.0873 1.3908 21 1 -6.8016 10.0435 -0.7106 22 1 -5.3170 8.1260 -0.7081 23 8 1.4262 2.3953 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.1531 0.6449 0.0006 28 1 4.5526 3.2992 0.0037 29 1 1.0808 7.0632 0.8850 30 1 1.0816 7.0617 -0.8949 31 1 -0.6316 8.9431 -0.0075 32 1 -3.1714 8.0865 -0.8974 33 1 -3.1722 8.0885 0.8825 34 1 -5.2659 12.2027 -0.0127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848854248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = -159.554871 kcal Electronic energy + Delta-G solvation = -21111.188593 eV Core-core repulsion = 17397.217714 eV Total energy + Delta-G solvation = -3713.970879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.01938 -41.80309 -40.44312 -39.64654 -37.81809 -36.23064 -34.47972 -34.42970 -31.76745 -30.77177 -29.04441 -28.12039 -24.91071 -23.93120 -23.19642 -21.85637 -21.76536 -20.13563 -19.45952 -19.11681 -18.48266 -18.32894 -17.76723 -17.43024 -16.93165 -16.44031 -16.38113 -16.01423 -15.80488 -15.01273 -14.63133 -14.48771 -14.43029 -14.25852 -14.04087 -13.90939 -13.81941 -13.10182 -13.09472 -12.72477 -12.61128 -12.18209 -11.95251 -11.94181 -11.68081 -11.23036 -11.00716 -10.93424 -10.06792 -9.37428 -8.40954 -6.48596 -0.44235 0.96242 1.12875 1.29299 1.32797 1.36306 1.46409 1.48693 1.74701 2.05732 2.27315 2.52615 2.94320 3.60377 3.62685 3.77811 4.02655 4.03215 4.10334 4.19406 4.20718 4.39282 4.63075 4.72430 4.76915 4.98504 5.03122 5.14472 5.22315 5.30612 5.37702 5.92803 6.04593 6.42948 6.51522 6.69693 7.09934 7.25361 8.73612 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.003073 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.306661 B = 9110.124023 C =10100.682744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.260 6.260 3 C 0.231 3.769 4 C -0.239 4.239 5 C -0.030 4.030 6 C -0.136 4.136 7 C 0.557 3.443 8 O -0.506 6.506 9 O -0.343 6.343 10 C 0.057 3.943 11 C 0.505 3.495 12 O -0.580 6.580 13 N -0.695 5.695 14 C 0.232 3.768 15 C -0.548 4.548 16 H 0.062 0.938 17 C 0.027 3.973 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.260 1.260 23 O -0.195 6.195 24 H 0.063 0.937 25 H 0.145 0.855 26 H 0.063 0.937 27 H 0.201 0.799 28 H 0.198 0.802 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.414 0.586 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.040 -23.485 0.043 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.173 6.173 3 C 0.133 3.867 4 C -0.258 4.258 5 C -0.050 4.050 6 C -0.184 4.184 7 C 0.406 3.594 8 O -0.399 6.399 9 O -0.259 6.259 10 C -0.020 4.020 11 C 0.291 3.709 12 O -0.461 6.461 13 N -0.347 5.347 14 C 0.109 3.891 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.174 4.174 18 N -0.569 5.569 19 Si 0.760 3.240 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.184 1.184 23 O -0.095 6.095 24 H 0.082 0.918 25 H 0.163 0.837 26 H 0.082 0.918 27 H 0.218 0.782 28 H 0.215 0.785 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.251 0.749 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.313 -23.827 0.041 28.324 hybrid contribution -1.020 0.583 0.012 1.175 sum 14.294 -23.244 0.054 27.287 Atomic orbital electron populations 1.23509 0.74678 1.07205 1.02950 1.86422 1.24962 1.17787 1.88151 1.21502 0.90500 0.78375 0.96347 1.21265 0.92040 0.97012 1.15504 1.22503 0.97127 0.93029 0.92310 1.19503 0.88159 0.84940 1.25777 1.18041 0.80767 0.87026 0.73583 1.90955 1.45142 1.55150 1.48626 1.86283 1.29564 1.25914 1.84130 1.22439 0.92978 0.79119 1.07506 1.20574 0.90704 0.83017 0.76628 1.90674 1.57353 1.46525 1.51510 1.45845 1.09551 1.06637 1.72621 1.19179 0.78706 0.95118 0.96128 1.21267 0.94269 0.90228 1.52830 0.91948 1.25590 1.01784 0.96430 0.93552 1.69980 1.23777 1.12593 1.50525 0.85866 0.79096 0.79505 0.79488 1.18949 1.19822 1.18393 1.84108 1.37841 1.14713 1.72845 0.91830 0.83682 0.91815 0.78161 0.78459 0.85614 0.85623 0.74939 0.96521 0.96619 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.74 113.37 1.22 1.34 16 2 O -0.26 -4.11 10.55 -64.20 -0.68 -4.79 16 3 C 0.23 4.36 7.86 67.33 0.53 4.89 16 4 C -0.24 -3.43 10.89 22.17 0.24 -3.18 16 5 C -0.03 -0.51 10.58 22.59 0.24 -0.27 16 6 C -0.14 -3.30 7.00 23.04 0.16 -3.14 16 7 C 0.56 15.57 7.73 68.65 0.53 16.10 16 8 O -0.51 -14.44 16.57 19.19 0.32 -14.12 16 9 O -0.34 -10.98 9.63 -51.37 -0.49 -11.48 16 10 C 0.06 1.61 5.86 71.24 0.42 2.02 16 11 C 0.50 19.17 7.91 87.66 0.69 19.87 16 12 O -0.58 -27.23 16.50 16.03 0.26 -26.97 16 13 N -0.70 -27.25 5.55 -466.81 -2.59 -29.84 16 14 C 0.23 11.22 4.50 85.63 0.38 11.61 16 15 C -0.55 -29.84 9.83 25.60 0.25 -29.59 16 16 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 17 C 0.03 1.51 5.47 84.65 0.46 1.97 16 18 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 19 Si 0.94 43.58 27.47 68.60 1.88 45.47 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 23 O -0.19 -4.82 10.14 16.38 0.17 -4.66 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.15 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 28 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.13 2.93 8.13 -2.39 -0.02 2.91 16 30 H 0.13 2.93 8.13 -2.39 -0.02 2.91 16 31 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 32 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 33 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 34 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -73.99 315.50 4.62 -69.37 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.32 Total: 10.24 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 5.13 Total: 21.62 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.29 Total: -84.68 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -0.42 Total: -62.01 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Total: -73.99 4.62 -69.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848854248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.188 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds