Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47136 * 2 1 4 4 N 1.32087 * 122.70490 * 270.23118 * 3 2 1 5 5 C 1.29766 * 116.85292 * 180.23154 * 4 3 2 6 6 S 1.76195 * 124.95447 * 179.84038 * 5 4 3 7 7 C 1.80998 * 100.00029 * 179.71848 * 6 5 4 8 8 C 1.53003 * 109.47044 * 179.97438 * 7 6 5 9 9 C 1.50704 * 115.55969 * 39.70484 * 8 7 6 10 10 H 1.07998 * 119.99701 * 260.72189 * 9 8 7 11 11 C 1.37870 * 120.00478 * 80.71922 * 9 8 7 12 12 N 1.31521 * 119.99942 * 2.28285 * 11 9 8 13 13 Si 1.86803 * 120.00446 * 182.28182 * 11 9 8 14 14 H 1.48504 * 109.46930 * 60.00082 * 13 11 9 15 15 H 1.48498 * 109.47310 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46881 * 300.00401 * 13 11 9 17 17 C 1.53000 * 117.49809 * 185.38532 * 8 7 6 18 18 C 1.53000 * 60.02945 * 107.48402 * 17 8 7 19 19 S 1.70965 * 110.09042 * 359.57663 * 5 4 3 20 20 C 1.33339 * 122.70143 * 89.99706 * 3 2 1 21 21 C 1.50696 * 125.95308 * 359.97438 * 20 3 2 22 22 H 1.08999 * 109.47314 * 59.99982 * 1 2 3 23 23 H 1.09000 * 109.47511 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47001 * 300.00075 * 1 2 3 25 25 H 1.09002 * 109.46867 * 240.00458 * 2 1 3 26 26 H 1.08997 * 109.46851 * 120.00244 * 2 1 3 27 27 H 1.09005 * 109.46651 * 60.00390 * 7 6 5 28 28 H 1.08993 * 109.47146 * 300.00253 * 7 6 5 29 29 H 0.97000 * 119.99907 * 174.98513 * 12 11 9 30 30 H 1.09007 * 117.49529 * 214.98534 * 17 8 7 31 31 H 1.09002 * 117.49784 * 359.97438 * 17 8 7 32 32 H 1.09004 * 117.49782 * 107.50216 * 18 17 8 33 33 H 1.08998 * 117.49588 * 252.51667 * 18 17 8 34 34 H 1.08992 * 109.47572 * 180.02562 * 21 20 3 35 35 H 1.09007 * 109.46512 * 300.02330 * 21 20 3 36 36 H 1.08999 * 109.47014 * 60.01529 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2660 2.0952 -1.1115 5 6 2.7012 3.3105 -0.9792 6 16 3.0847 4.3962 -2.3129 7 6 3.6031 5.8619 -1.3859 8 6 3.9957 6.9712 -2.3637 9 6 3.1209 7.1021 -3.5839 10 1 3.4361 6.6718 -4.5229 11 6 1.9182 7.7711 -3.5014 12 7 1.5550 8.3338 -2.3695 13 14 0.8045 7.8785 -4.9973 14 1 0.4247 6.5098 -5.4308 15 1 -0.4186 8.6455 -4.6498 16 1 1.5225 8.5658 -6.1007 17 6 4.5849 8.2551 -1.7760 18 6 5.4872 7.2740 -2.5272 19 16 2.8413 3.7070 0.6779 20 6 2.2724 2.1000 1.1220 21 6 2.0890 1.5831 2.5256 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 4.4587 5.6112 -0.7588 28 1 2.7805 6.2045 -0.7583 29 1 0.7448 8.8658 -2.3304 30 1 4.3398 9.1943 -2.2719 31 1 4.6924 8.3095 -0.6926 32 1 5.8358 7.5679 -3.5173 33 1 6.1882 6.6829 -1.9380 34 1 2.3636 2.3608 3.2381 35 1 1.0462 1.3039 2.6765 36 1 2.7243 0.7105 2.6773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849927445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = 46.293121 kcal Electronic energy + Delta-G solvation = -17430.631773 eV Core-core repulsion = 14746.925969 eV Total energy + Delta-G solvation = -2683.705804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50206 -36.72134 -33.83151 -32.07068 -31.47111 -28.14000 -26.97751 -25.50146 -24.04493 -23.23455 -21.22418 -19.63117 -18.47072 -18.00504 -16.49489 -15.89633 -14.98296 -14.72194 -14.38731 -13.95230 -13.86920 -13.61911 -13.25379 -13.12127 -12.90644 -12.61271 -12.30386 -12.19453 -11.82752 -11.62738 -11.10034 -11.05563 -10.94438 -10.63249 -10.57284 -10.31580 -10.11345 -9.71187 -9.14938 -9.10723 -8.96671 -8.77766 -8.56048 -8.16607 -6.79480 -6.15130 -4.23336 0.96896 1.53706 1.82419 2.10581 3.04341 3.26764 3.29637 3.33296 3.38177 4.34167 4.66204 5.00414 5.09675 5.14967 5.15536 5.29706 5.33828 5.43695 5.54011 5.76293 5.78456 5.81766 5.86041 5.96186 6.15577 6.18900 6.24411 6.34176 6.46985 6.59341 6.66524 6.94161 7.16889 7.38229 7.76875 8.02359 8.22012 8.78056 9.43948 10.92452 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.005170 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.942991 B = 5414.373486 C = 6090.505011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.081 3.919 4 N -0.472 5.472 5 C 0.023 3.977 6 S 0.065 5.935 7 C -0.078 4.078 8 C 0.052 3.948 9 C -0.496 4.496 10 H 0.066 0.934 11 C 0.081 3.919 12 N -0.873 5.873 13 Si 0.889 3.111 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.146 4.146 18 C -0.205 4.205 19 S 0.106 5.894 20 C -0.254 4.254 21 C -0.064 4.064 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -11.022 8.486 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.054 4.054 4 N -0.191 5.191 5 C -0.361 4.361 6 S 0.303 5.697 7 C -0.228 4.228 8 C 0.050 3.950 9 C -0.535 4.535 10 H 0.084 0.916 11 C -0.124 4.124 12 N -0.508 5.508 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.185 4.185 18 C -0.243 4.243 19 S 0.358 5.642 20 C -0.380 4.380 21 C -0.123 4.123 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.145 -10.404 7.352 12.791 hybrid contribution -0.918 -0.336 0.684 1.193 sum 0.227 -10.740 8.036 13.416 Atomic orbital electron populations 1.21691 0.94538 1.01523 1.02427 1.20060 0.96046 0.89555 1.02869 1.20134 1.00843 0.98001 0.86448 1.66541 1.17577 1.04695 1.30312 1.29565 1.04755 0.99938 1.01858 1.86364 1.78282 1.02746 1.02324 1.23563 1.02725 0.95947 1.00602 1.18397 0.90294 0.91109 0.95239 1.20339 1.02397 1.36780 0.94031 0.91608 1.24945 0.97083 0.94617 0.95804 1.69958 1.24480 1.31453 1.24931 0.86685 0.80066 0.78716 0.82955 1.19524 1.21170 1.20092 1.22596 1.03537 0.95712 0.96692 1.23100 0.94598 1.05583 1.00978 1.84051 1.63712 1.14147 1.02296 1.25369 1.14668 0.97452 1.00463 1.20084 1.02150 1.00596 0.89450 0.92216 0.92260 0.92761 0.90368 0.90632 0.91951 0.89012 0.92660 0.89480 0.91729 0.89943 0.91400 0.91714 0.91020 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.55 6.11 -27.88 -0.17 -0.72 16 3 C 0.08 1.30 5.99 -84.19 -0.50 0.80 16 4 N -0.47 -9.19 10.59 -10.94 -0.12 -9.30 16 5 C 0.02 0.46 7.59 51.89 0.39 0.86 16 6 S 0.07 1.40 21.15 -107.50 -2.27 -0.88 16 7 C -0.08 -1.68 4.75 37.16 0.18 -1.50 16 8 C 0.05 1.20 1.64 -155.62 -0.25 0.94 16 9 C -0.50 -12.73 7.52 -34.44 -0.26 -12.98 16 10 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.08 2.11 5.44 -17.82 -0.10 2.01 16 12 N -0.87 -23.52 12.90 55.43 0.72 -22.81 16 13 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.15 -3.19 9.49 -26.73 -0.25 -3.45 16 18 C -0.21 -4.20 9.88 -26.70 -0.26 -4.47 16 19 S 0.11 1.79 21.54 -107.50 -2.32 -0.52 16 20 C -0.25 -3.79 6.57 -36.02 -0.24 -4.03 16 21 C -0.06 -0.67 9.54 36.00 0.34 -0.33 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16 27 H 0.06 1.20 7.78 -51.91 -0.40 0.80 16 28 H 0.09 2.10 7.97 -51.92 -0.41 1.69 16 29 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 30 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -27.81 330.12 -10.18 -37.99 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.39 Total: -1.00 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -0.76 Total: -24.10 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.60 Total: -32.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -4.59 Total: -1.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.81 -10.18 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849927445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.281 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds