Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47258 * 300.00409 * 3 2 1 6 6 H 1.48503 * 109.47058 * 60.00429 * 3 2 1 7 7 C 1.37872 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99953 * 0.27497 * 7 2 1 10 10 H 1.09003 * 109.50263 * 59.72019 * 9 7 2 11 11 C 1.53042 * 109.50010 * 179.78699 * 9 7 2 12 12 C 1.53039 * 109.53883 * 181.31266 * 11 9 7 13 13 C 1.53188 * 109.31592 * 298.63641 * 12 11 9 14 14 N 1.46928 * 108.77485 * 54.63699 * 13 12 11 15 15 C 1.34771 * 120.63401 * 126.43494 * 14 13 12 16 16 O 1.21281 * 119.99988 * 354.51927 * 15 14 13 17 17 C 1.50706 * 120.00240 * 174.52154 * 15 14 13 18 18 H 1.08997 * 109.46916 * 343.98789 * 17 15 14 19 19 F 1.39900 * 109.47027 * 103.98815 * 17 15 14 20 20 C 1.53001 * 109.46993 * 223.98963 * 17 15 14 21 21 F 1.39900 * 109.47354 * 60.00053 * 20 17 15 22 22 F 1.39901 * 109.46928 * 180.02562 * 20 17 15 23 23 F 1.39902 * 109.46949 * 299.99601 * 20 17 15 24 24 C 1.46936 * 118.76336 * 306.41146 * 14 13 12 25 25 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46006 * 301.33880 * 11 9 7 27 27 H 1.09005 * 109.45674 * 61.29332 * 11 9 7 28 28 H 1.09005 * 109.49546 * 58.58723 * 12 11 9 29 29 H 1.09002 * 109.49688 * 178.68295 * 12 11 9 30 30 H 1.08999 * 109.59120 * 174.42274 * 13 12 11 31 31 H 1.08996 * 109.59086 * 294.84943 * 13 12 11 32 32 H 1.09003 * 109.55840 * 293.78507 * 24 14 13 33 33 H 1.09003 * 109.61785 * 173.36056 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0074 10 1 0.6240 -2.5527 -0.8975 11 6 2.2449 -3.6628 -0.0119 12 6 1.4809 -4.9883 -0.0519 13 6 0.6045 -5.1059 1.1990 14 7 -0.2542 -3.9170 1.2882 15 6 -1.5905 -4.0426 1.4093 16 8 -2.1048 -5.1392 1.3457 17 6 -2.4460 -2.8205 1.6237 18 1 -1.8167 -1.9866 1.9346 19 9 -3.0985 -2.4929 0.4304 20 6 -3.4840 -3.1089 2.7101 21 9 -2.8315 -3.4365 3.9035 22 9 -4.2785 -1.9746 2.9088 23 9 -4.2917 -4.1792 2.3111 24 6 0.3712 -2.5882 1.2436 25 1 -0.4850 0.8401 0.0004 26 1 2.8880 -3.5877 -0.8888 27 1 2.8553 -3.6225 0.8903 28 1 0.8515 -5.0187 -0.9413 29 1 2.1897 -5.8160 -0.0787 30 1 -0.0153 -5.9997 1.1282 31 1 1.2374 -5.1668 2.0842 32 1 0.9848 -2.4436 2.1329 33 1 -0.4020 -1.8210 1.2020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -239.266484 kcal Electronic energy + Delta-G solvation = -23980.248563 eV Core-core repulsion = 19733.337178 eV Total energy + Delta-G solvation = -4246.911385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.16703 -48.09099 -47.55151 -47.34302 -39.72052 -37.03966 -33.41984 -32.59289 -30.73761 -29.76567 -25.48081 -25.14084 -23.71819 -21.86350 -20.37779 -19.17261 -18.72458 -18.38044 -17.77553 -17.20597 -16.40917 -16.02167 -15.32754 -14.76715 -14.53845 -14.44399 -14.29124 -14.15983 -13.97392 -13.89922 -13.69881 -13.67238 -13.63155 -13.08108 -12.88522 -12.37401 -12.31326 -12.09905 -11.39645 -11.16117 -11.00746 -10.67329 -10.52696 -10.39211 -10.20213 -9.78637 -9.29198 -9.16239 -8.67997 -8.13815 -6.26869 -4.32585 2.24569 2.57827 3.10714 3.17629 3.27062 3.29640 3.53976 4.00423 4.06372 4.24989 4.42673 4.75611 5.07742 5.10324 5.37413 5.42966 5.61017 5.89593 6.07959 6.16113 6.23885 6.45218 6.58444 6.67332 6.75867 6.89784 7.23273 7.57072 7.67228 7.75456 8.08731 8.23556 8.72673 9.34825 10.80941 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.007088 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.031973 B = 3949.227496 C = 5091.539499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.038 3.962 10 H 0.034 0.966 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.584 5.584 15 C 0.496 3.504 16 O -0.528 6.528 17 C 0.037 3.963 18 H 0.156 0.844 19 F -0.151 7.151 20 C 0.446 3.554 21 F -0.171 7.171 22 F -0.171 7.171 23 F -0.160 7.160 24 C 0.094 3.906 25 H 0.266 0.734 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -5.122 4.885 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.316 5.316 15 C 0.279 3.721 16 O -0.406 6.406 17 C -0.003 4.003 18 H 0.173 0.827 19 F -0.131 7.131 20 C 0.390 3.610 21 F -0.152 7.152 22 F -0.152 7.152 23 F -0.141 7.141 24 C -0.027 4.027 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.609 -5.571 4.842 7.828 hybrid contribution 0.221 1.146 0.031 1.168 sum -2.388 -4.425 4.873 7.002 Atomic orbital electron populations 1.69782 1.05955 1.27177 1.50384 1.25019 0.94961 0.99469 0.94487 0.86457 0.80103 0.83258 0.77783 1.19705 1.20886 1.20851 1.21164 0.93251 0.89823 1.51045 0.91939 1.18986 0.92863 0.92854 0.93380 0.94739 1.21637 0.98482 0.93817 1.01004 1.21956 0.98586 0.99146 0.97527 1.21640 0.92797 0.87993 0.98511 1.48523 1.04518 1.10326 1.68198 1.19986 0.83745 0.89020 0.79368 1.90740 1.72589 1.26554 1.50691 1.22898 0.92150 1.02702 0.82565 0.82733 1.93003 1.81536 1.93471 1.45107 1.20513 0.82506 0.75189 0.82777 1.93213 1.80934 1.92632 1.48419 1.93230 1.75583 1.50990 1.95422 1.93272 1.74501 1.56072 1.90262 1.22701 0.99288 0.79754 1.00913 0.92439 0.92600 0.92887 0.91936 0.91730 0.89684 0.91371 0.92228 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.64 11.40 55.43 0.63 -22.01 16 2 C 0.06 1.54 5.31 -17.82 -0.09 1.45 16 3 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.51 -12.49 8.56 -34.44 -0.29 -12.78 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.84 2.25 -91.65 -0.21 0.63 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.03 5.11 -26.69 -0.14 -2.17 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.11 1.81 6.44 -3.71 -0.02 1.79 16 14 N -0.58 -10.87 2.97 -172.76 -0.51 -11.39 16 15 C 0.50 9.56 6.78 -10.99 -0.07 9.49 16 16 O -0.53 -11.07 14.99 5.56 0.08 -10.99 16 17 C 0.04 0.67 3.20 -27.88 -0.09 0.58 16 18 H 0.16 2.62 5.71 -51.93 -0.30 2.33 16 19 F -0.15 -2.93 17.03 2.25 0.04 -2.90 16 20 C 0.45 7.34 2.86 37.16 0.11 7.44 16 21 F -0.17 -2.69 17.03 2.25 0.04 -2.65 16 22 F -0.17 -2.66 17.30 2.25 0.04 -2.62 16 23 F -0.16 -2.82 15.94 2.25 0.04 -2.78 16 24 C 0.09 1.90 5.16 -3.70 -0.02 1.88 16 25 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.37 7.00 -51.93 -0.36 1.00 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.11 2.39 3.56 -51.93 -0.19 2.21 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -26.23 288.56 -4.66 -30.89 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.35 Total: -0.36 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.99 Total: 6.04 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.12 Total: -33.40 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 0.15 Total: -10.96 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.23 -4.66 -30.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.376 kcal (2) G-P(sol) polarization free energy of solvation -26.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds