Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00344 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99818 * 3 2 1 5 5 H 1.48499 * 109.47245 * 29.99511 * 3 2 1 6 6 H 1.48500 * 109.47551 * 149.99818 * 3 2 1 7 7 C 1.37876 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00097 * 180.27979 * 7 2 1 10 10 H 1.08991 * 109.49992 * 59.65862 * 9 7 2 11 11 C 1.53041 * 109.49799 * 179.72505 * 9 7 2 12 12 C 1.53037 * 109.53852 * 181.31306 * 11 9 7 13 13 C 1.53187 * 109.31726 * 298.63542 * 12 11 9 14 14 N 1.46926 * 108.77631 * 54.62951 * 13 12 11 15 15 C 1.34782 * 120.63000 * 126.41352 * 14 13 12 16 16 O 1.21278 * 119.99883 * 175.59587 * 15 14 13 17 17 C 1.50695 * 119.99868 * 355.59778 * 15 14 13 18 18 H 1.08996 * 109.47471 * 16.46944 * 17 15 14 19 19 F 1.39901 * 109.47020 * 256.46743 * 17 15 14 20 20 C 1.53003 * 109.46853 * 136.46932 * 17 15 14 21 21 F 1.39895 * 109.47357 * 59.99913 * 20 17 15 22 22 F 1.39903 * 109.46726 * 180.02562 * 20 17 15 23 23 F 1.39901 * 109.47153 * 299.99729 * 20 17 15 24 24 C 1.46922 * 118.74061 * 306.39908 * 14 13 12 25 25 H 0.96997 * 119.99216 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46153 * 301.33252 * 11 9 7 27 27 H 1.09001 * 109.46261 * 61.29380 * 11 9 7 28 28 H 1.09005 * 109.49672 * 58.58485 * 12 11 9 29 29 H 1.09004 * 109.50051 * 178.64915 * 12 11 9 30 30 H 1.09000 * 109.59490 * 174.42156 * 13 12 11 31 31 H 1.09001 * 109.58576 * 294.70525 * 13 12 11 32 32 H 1.08999 * 109.58883 * 293.81640 * 24 14 13 33 33 H 1.09003 * 109.59251 * 173.38924 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0069 10 1 3.8716 -0.6769 0.8961 11 6 4.0223 -2.6368 0.0131 12 6 5.5521 -2.6379 0.0526 13 6 6.0919 -1.9394 -1.1993 14 7 5.4916 -0.6014 -1.2902 15 6 6.2687 0.4930 -1.4125 16 8 5.7605 1.5833 -1.5669 17 6 7.7689 0.3618 -1.3574 18 1 8.0483 -0.6807 -1.5089 19 9 8.2290 0.7911 -0.1079 20 6 8.3967 1.2228 -2.4554 21 9 8.0382 2.5610 -2.2610 22 9 9.7895 1.1006 -2.4046 23 9 7.9367 0.7935 -3.7049 24 6 4.0282 -0.4792 -1.2457 25 1 -0.4849 0.8401 -0.0004 26 1 3.6360 -3.1550 0.8908 27 1 3.6819 -3.1464 -0.8883 28 1 5.8935 -2.1069 0.9413 29 1 5.9146 -3.6655 0.0813 30 1 7.1759 -1.8495 -1.1290 31 1 5.8300 -2.5205 -2.0835 32 1 3.5958 -0.9399 -2.1338 33 1 3.7504 0.5741 -1.2058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = -225.176583 kcal Electronic energy + Delta-G solvation = -23904.558200 eV Core-core repulsion = 19658.257799 eV Total energy + Delta-G solvation = -4246.300401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.49431 -48.58112 -47.89162 -47.68473 -40.04976 -37.33007 -33.78657 -32.22842 -31.42139 -30.37784 -25.76292 -25.44748 -23.65798 -22.28473 -20.47662 -19.40162 -19.05174 -18.71166 -18.25608 -17.57337 -16.86224 -16.49556 -15.74214 -14.99445 -14.76470 -14.60562 -14.54007 -14.36910 -14.27614 -14.23031 -14.13241 -13.96447 -13.91468 -13.40299 -13.05589 -12.84196 -12.61290 -12.30568 -11.91173 -11.37882 -11.18514 -10.75621 -10.60213 -10.27012 -9.98803 -9.84303 -9.37906 -9.23568 -8.72508 -8.40022 -6.19384 -4.21847 1.89111 2.24930 2.74535 3.18865 3.30259 3.38644 3.47978 3.56747 3.65360 3.82469 4.21944 4.33318 4.58718 4.83140 5.08254 5.11954 5.28148 5.56266 5.78503 5.92004 5.95333 6.21798 6.30171 6.40847 6.53874 6.58402 6.99200 7.25939 7.37456 7.58696 7.91177 8.38262 8.83714 9.41458 10.92444 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.006442 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.879433 B = 4345.758104 C = 5033.099171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.004 3.996 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.138 4.138 13 C 0.098 3.902 14 N -0.587 5.587 15 C 0.485 3.515 16 O -0.503 6.503 17 C 0.030 3.970 18 H 0.148 0.852 19 F -0.154 7.154 20 C 0.447 3.553 21 F -0.154 7.154 22 F -0.172 7.172 23 F -0.167 7.167 24 C 0.101 3.899 25 H 0.267 0.733 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.066 -3.882 -4.064 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.098 0.902 9 C -0.016 4.016 10 H 0.051 0.949 11 C -0.139 4.139 12 C -0.176 4.176 13 C -0.024 4.024 14 N -0.319 5.319 15 C 0.267 3.733 16 O -0.377 6.377 17 C -0.011 4.011 18 H 0.165 0.835 19 F -0.134 7.134 20 C 0.392 3.608 21 F -0.136 7.136 22 F -0.153 7.153 23 F -0.148 7.148 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.611 -3.153 -4.141 18.364 hybrid contribution 0.626 1.087 -0.078 1.257 sum 18.237 -2.066 -4.219 18.832 Atomic orbital electron populations 1.69878 1.06246 1.27286 1.49473 1.25042 0.94767 0.99041 0.93989 0.87059 0.79800 0.83663 0.79097 1.19734 1.21931 1.18925 1.20911 0.87912 0.94725 1.52042 0.90245 1.19523 0.97084 0.92291 0.92655 0.94916 1.21457 0.91712 0.98768 1.01975 1.22009 0.98842 0.99863 0.96858 1.21991 0.96770 0.83298 1.00361 1.48502 1.08936 1.05359 1.69119 1.19995 0.87048 0.85977 0.80290 1.90838 1.73749 1.25631 1.47491 1.23031 0.95834 1.01466 0.80781 0.83452 1.93005 1.89111 1.91433 1.39888 1.20353 0.76850 0.80801 0.82837 1.93310 1.91236 1.34226 1.94779 1.93235 1.29798 1.95870 1.96401 1.93243 1.88553 1.89589 1.43448 1.22881 0.73955 1.03063 1.01984 0.92350 0.91787 0.92201 0.91633 0.90997 0.90886 0.90068 0.90521 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.87 22.58 24.33 -169.99 -4.14 18.45 16 4 H -0.27 -7.06 6.92 56.52 0.39 -6.66 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.26 -6.81 6.52 56.52 0.37 -6.44 16 7 C -0.52 -13.76 9.14 -34.44 -0.31 -14.07 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 10 H 0.03 0.77 7.19 -51.93 -0.37 0.40 16 11 C -0.10 -1.72 5.11 -26.69 -0.14 -1.86 16 12 C -0.14 -1.75 6.08 -26.62 -0.16 -1.91 16 13 C 0.10 1.16 6.32 -3.71 -0.02 1.14 16 14 N -0.59 -9.97 2.97 -172.77 -0.51 -10.48 16 15 C 0.49 8.53 6.79 -10.99 -0.07 8.45 16 16 O -0.50 -11.01 14.99 5.56 0.08 -10.93 16 17 C 0.03 0.39 3.39 -27.88 -0.09 0.29 16 18 H 0.15 1.23 5.36 -51.93 -0.28 0.95 16 19 F -0.15 -2.16 17.03 2.25 0.04 -2.12 16 20 C 0.45 5.91 2.85 37.16 0.11 6.01 16 21 F -0.15 -2.47 15.94 2.25 0.04 -2.43 16 22 F -0.17 -1.99 17.30 2.25 0.04 -1.95 16 23 F -0.17 -2.18 17.02 2.25 0.04 -2.14 16 24 C 0.10 2.11 5.10 -3.71 -0.02 2.09 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.61 5.15 -51.93 -0.27 0.34 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.08 1.96 2.38 -51.93 -0.12 1.83 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -31.80 281.40 -3.56 -35.36 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.18 Total: -4.20 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.98 Total: 2.09 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.26 Total: -36.37 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.15 Total: -8.65 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.45 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.80 -3.56 -35.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.815 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds