Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47238 * 239.99982 * 3 2 1 5 5 H 1.48507 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46919 * 119.99691 * 3 2 1 7 7 C 1.37876 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.52221 * 299.92162 * 9 7 2 11 11 C 1.53351 * 109.68270 * 179.75421 * 9 7 2 12 12 C 1.53034 * 109.60877 * 178.74970 * 11 9 7 13 13 C 1.53191 * 109.31332 * 61.37160 * 12 11 9 14 14 N 1.46928 * 108.77738 * 305.36501 * 13 12 11 15 15 C 1.34771 * 120.63379 * 233.58926 * 14 13 12 16 16 O 1.21283 * 119.99992 * 355.61696 * 15 14 13 17 17 C 1.50699 * 120.00028 * 175.61703 * 15 14 13 18 18 H 1.08998 * 109.47127 * 16.47360 * 17 15 14 19 19 F 1.39904 * 109.47022 * 256.46872 * 17 15 14 20 20 C 1.53000 * 109.47026 * 136.47229 * 17 15 14 21 21 F 1.39899 * 109.47079 * 60.00314 * 20 17 15 22 22 F 1.39904 * 109.47261 * 179.97438 * 20 17 15 23 23 F 1.39898 * 109.47349 * 300.00010 * 20 17 15 24 24 C 1.46931 * 118.73525 * 53.60984 * 14 13 12 25 25 H 0.97001 * 120.00163 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.42074 * 58.70909 * 11 9 7 27 27 H 1.09007 * 109.43193 * 298.79821 * 11 9 7 28 28 H 1.09001 * 109.49392 * 301.42319 * 12 11 9 29 29 H 1.09003 * 109.52702 * 181.34023 * 12 11 9 30 30 H 1.09003 * 109.58893 * 185.58115 * 13 12 11 31 31 H 1.08997 * 109.58947 * 65.15573 * 13 12 11 32 32 H 1.08999 * 109.58619 * 66.17931 * 24 14 13 33 33 H 1.08998 * 109.58207 * 186.46221 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6255 -2.5586 0.8901 11 6 2.2433 -3.6684 -0.0074 12 6 1.4768 -4.9926 0.0241 13 6 0.5973 -5.0988 -1.2257 14 7 -0.2592 -3.9075 -1.3040 15 6 -1.5961 -4.0295 -1.4226 16 8 -2.0962 -5.1275 -1.5457 17 6 -2.4695 -2.8017 -1.4023 18 1 -1.8574 -1.9173 -1.5792 19 9 -3.0944 -2.6945 -0.1551 20 6 -3.5323 -2.9136 -2.4972 21 9 -4.3180 -4.0486 -2.2702 22 9 -4.3435 -1.7740 -2.4780 23 9 -2.9075 -3.0208 -3.7443 24 6 0.3697 -2.5806 -1.2509 25 1 -0.4850 0.8400 -0.0004 26 1 2.8885 -3.6014 0.8686 27 1 2.8518 -3.6224 -0.9106 28 1 0.8492 -5.0286 0.9146 29 1 2.1835 -5.8223 0.0432 30 1 -0.0241 -5.9919 -1.1605 31 1 1.2282 -5.1542 -2.1129 32 1 0.9820 -2.4307 -2.1400 33 1 -0.4020 -1.8122 -1.2047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = -238.225372 kcal Electronic energy + Delta-G solvation = -24014.813133 eV Core-core repulsion = 19767.946894 eV Total energy + Delta-G solvation = -4246.866239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.13756 -48.07714 -47.52117 -47.32202 -39.72445 -37.04018 -33.42075 -32.59975 -30.73703 -29.74915 -25.48043 -25.14966 -23.70994 -21.86303 -20.37185 -19.15690 -18.70135 -18.34710 -17.79557 -17.21154 -16.40642 -16.03178 -15.29999 -14.76885 -14.58933 -14.40686 -14.27257 -14.10346 -13.95243 -13.93453 -13.66481 -13.64374 -13.60623 -13.12474 -12.90209 -12.37653 -12.28609 -12.08350 -11.40352 -11.14464 -10.99494 -10.70182 -10.52453 -10.40496 -10.22751 -9.78694 -9.29698 -9.16736 -8.68058 -8.14456 -6.28504 -4.33656 2.28047 2.56541 3.12723 3.19585 3.25682 3.27408 3.57017 4.03387 4.08256 4.24389 4.44067 4.79680 5.06721 5.12719 5.36745 5.42133 5.60250 5.89703 6.07211 6.15447 6.23288 6.44389 6.57061 6.66985 6.74597 6.88933 7.21535 7.55700 7.66645 7.74143 8.08279 8.23042 8.70988 9.33642 10.79712 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.007276 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.136918 B = 3847.541868 C = 5016.591857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.038 3.962 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.584 5.584 15 C 0.495 3.505 16 O -0.529 6.529 17 C 0.033 3.967 18 H 0.162 0.838 19 F -0.153 7.153 20 C 0.446 3.554 21 F -0.161 7.161 22 F -0.171 7.171 23 F -0.170 7.170 24 C 0.093 3.907 25 H 0.267 0.733 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -4.824 -4.081 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.315 5.315 15 C 0.278 3.722 16 O -0.406 6.406 17 C -0.007 4.007 18 H 0.179 0.821 19 F -0.133 7.133 20 C 0.390 3.610 21 F -0.142 7.142 22 F -0.152 7.152 23 F -0.152 7.152 24 C -0.027 4.027 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.673 -5.272 -4.137 7.215 hybrid contribution 0.242 1.131 -0.012 1.156 sum -2.431 -4.141 -4.149 6.346 Atomic orbital electron populations 1.69744 1.06005 1.27434 1.50397 1.25004 0.94967 0.99461 0.94424 0.86549 0.79582 0.82553 0.78769 1.20138 1.21122 1.20165 1.21090 0.93213 0.89850 1.51172 0.92030 1.19042 0.92881 0.92772 0.93368 0.94718 1.21689 0.98490 0.93819 1.01010 1.21959 0.98593 0.99173 0.97499 1.21638 0.92858 0.87881 0.98519 1.48515 1.04460 1.10311 1.68212 1.19990 0.83774 0.89177 0.79216 1.90740 1.73601 1.26535 1.49764 1.22987 0.92181 1.05002 0.80526 0.82121 1.92985 1.82811 1.97291 1.40202 1.20516 0.82856 0.74674 0.82948 1.93267 1.75780 1.50838 1.94310 1.93231 1.74696 1.50778 1.96508 1.93213 1.82196 1.95853 1.43908 1.22713 0.99232 0.79824 1.00960 0.92307 0.92601 0.92876 0.91952 0.91669 0.89721 0.91381 0.92079 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.46 11.39 55.43 0.63 -21.83 16 2 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 3 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.51 -12.43 8.57 -34.44 -0.30 -12.73 16 8 H 0.06 1.47 7.75 -52.48 -0.41 1.07 16 9 C 0.04 0.84 2.27 -91.49 -0.21 0.63 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.03 5.13 -26.53 -0.14 -2.17 16 12 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 13 C 0.11 1.83 6.42 -3.71 -0.02 1.80 16 14 N -0.58 -10.89 2.97 -172.77 -0.51 -11.40 16 15 C 0.50 9.59 6.79 -10.99 -0.07 9.51 16 16 O -0.53 -11.07 14.99 5.55 0.08 -10.99 16 17 C 0.03 0.61 3.39 -27.88 -0.09 0.51 16 18 H 0.16 2.86 5.36 -51.93 -0.28 2.58 16 19 F -0.15 -2.96 17.03 2.25 0.04 -2.92 16 20 C 0.45 7.49 2.85 37.16 0.11 7.60 16 21 F -0.16 -2.87 15.94 2.25 0.04 -2.83 16 22 F -0.17 -2.73 17.30 2.25 0.04 -2.69 16 23 F -0.17 -2.77 17.02 2.25 0.04 -2.73 16 24 C 0.09 1.88 5.28 -3.71 -0.02 1.86 16 25 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.36 7.03 -51.93 -0.37 1.00 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.11 2.37 3.26 -51.93 -0.17 2.20 16 LS Contribution 288.29 15.07 4.34 4.34 Total: -1.00 -25.85 288.29 -4.64 -30.49 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.31 Total: -0.02 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.00 Total: 6.22 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.12 Total: -33.23 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 0.15 Total: -11.17 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.85 -4.64 -30.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.737 kcal (2) G-P(sol) polarization free energy of solvation -25.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds