Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47238 * 239.99982 * 3 2 1 5 5 H 1.48507 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46919 * 119.99691 * 3 2 1 7 7 C 1.37876 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.52221 * 299.92162 * 9 7 2 11 11 C 1.53351 * 109.68270 * 179.75421 * 9 7 2 12 12 C 1.53034 * 109.60877 * 178.74970 * 11 9 7 13 13 C 1.53191 * 109.31332 * 61.37160 * 12 11 9 14 14 N 1.46928 * 108.77738 * 305.36501 * 13 12 11 15 15 C 1.34771 * 120.63379 * 233.58926 * 14 13 12 16 16 O 1.21283 * 119.99992 * 355.61696 * 15 14 13 17 17 C 1.50699 * 120.00028 * 175.61703 * 15 14 13 18 18 H 1.08998 * 109.47127 * 16.47360 * 17 15 14 19 19 F 1.39904 * 109.47022 * 256.46872 * 17 15 14 20 20 C 1.53000 * 109.47026 * 136.47229 * 17 15 14 21 21 F 1.39899 * 109.47079 * 60.00314 * 20 17 15 22 22 F 1.39904 * 109.47261 * 179.97438 * 20 17 15 23 23 F 1.39898 * 109.47349 * 300.00010 * 20 17 15 24 24 C 1.46931 * 118.73525 * 53.60984 * 14 13 12 25 25 H 0.97001 * 120.00163 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.42074 * 58.70909 * 11 9 7 27 27 H 1.09007 * 109.43193 * 298.79821 * 11 9 7 28 28 H 1.09001 * 109.49392 * 301.42319 * 12 11 9 29 29 H 1.09003 * 109.52702 * 181.34023 * 12 11 9 30 30 H 1.09003 * 109.58893 * 185.58115 * 13 12 11 31 31 H 1.08997 * 109.58947 * 65.15573 * 13 12 11 32 32 H 1.08999 * 109.58619 * 66.17931 * 24 14 13 33 33 H 1.08998 * 109.58207 * 186.46221 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6255 -2.5586 0.8901 11 6 2.2433 -3.6684 -0.0074 12 6 1.4768 -4.9926 0.0241 13 6 0.5973 -5.0988 -1.2257 14 7 -0.2592 -3.9075 -1.3040 15 6 -1.5961 -4.0295 -1.4226 16 8 -2.0962 -5.1275 -1.5457 17 6 -2.4695 -2.8017 -1.4023 18 1 -1.8574 -1.9173 -1.5792 19 9 -3.0944 -2.6945 -0.1551 20 6 -3.5323 -2.9136 -2.4972 21 9 -4.3180 -4.0486 -2.2702 22 9 -4.3435 -1.7740 -2.4780 23 9 -2.9075 -3.0208 -3.7443 24 6 0.3697 -2.5806 -1.2509 25 1 -0.4850 0.8400 -0.0004 26 1 2.8885 -3.6014 0.8686 27 1 2.8518 -3.6224 -0.9106 28 1 0.8492 -5.0286 0.9146 29 1 2.1835 -5.8223 0.0432 30 1 -0.0241 -5.9919 -1.1605 31 1 1.2282 -5.1542 -2.1129 32 1 0.9820 -2.4307 -2.1400 33 1 -0.4020 -1.8122 -1.2047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = -251.326278 kcal Electronic energy + Delta-G solvation = -24015.381231 eV Core-core repulsion = 19767.946894 eV Total energy + Delta-G solvation = -4247.434337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.50705 -49.54299 -48.87783 -48.72653 -41.24540 -38.59256 -35.16382 -34.08707 -32.28422 -31.28809 -27.12692 -26.73251 -25.14820 -23.36655 -21.90884 -20.61195 -20.09741 -19.74418 -19.25486 -18.74527 -18.16371 -17.56214 -16.79629 -16.51527 -16.10478 -15.75676 -15.64383 -15.54674 -15.40430 -15.28751 -15.20879 -15.00456 -14.97594 -14.65810 -14.52570 -13.89049 -13.79819 -13.58675 -12.97475 -12.83965 -12.52509 -12.31339 -12.22762 -11.84804 -11.73317 -11.39784 -10.94811 -10.81702 -10.50449 -9.68235 -8.14238 -6.24930 0.81947 1.08470 1.47550 1.50461 1.56081 1.69420 2.17921 2.44741 2.64186 2.65037 2.95767 3.20347 3.36540 3.67075 4.04427 4.11076 4.25156 4.54840 4.58964 4.74317 4.81753 5.01513 5.08184 5.16181 5.25237 5.44170 5.57221 5.81320 5.92875 6.09935 6.33301 6.67145 6.85278 7.44672 8.92044 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.007276 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.136918 B = 3847.541868 C = 5016.591857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.035 3.965 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.107 3.893 14 N -0.583 5.583 15 C 0.493 3.507 16 O -0.546 6.546 17 C 0.032 3.968 18 H 0.164 0.836 19 F -0.162 7.162 20 C 0.455 3.545 21 F -0.165 7.165 22 F -0.164 7.164 23 F -0.165 7.165 24 C 0.103 3.897 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -5.227 -4.774 7.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.016 3.984 10 H 0.016 0.984 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.014 4.014 14 N -0.313 5.313 15 C 0.276 3.724 16 O -0.425 6.425 17 C -0.009 4.009 18 H 0.181 0.819 19 F -0.142 7.142 20 C 0.399 3.601 21 F -0.147 7.147 22 F -0.145 7.145 23 F -0.146 7.146 24 C -0.018 4.018 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.718 -5.685 -4.831 7.656 hybrid contribution -0.028 1.251 0.234 1.273 sum -1.746 -4.434 -4.597 6.621 Atomic orbital electron populations 1.69850 1.06871 1.27795 1.50958 1.25626 0.95640 1.02009 0.94399 0.85720 0.78448 0.79442 0.78692 1.19446 1.21346 1.20367 1.21404 0.93399 0.91061 1.50935 0.92125 1.18995 0.93308 0.93675 0.92442 0.98423 1.21603 0.97826 0.93564 1.01510 1.21903 0.98712 0.99038 0.96631 1.21902 0.92892 0.86814 0.99786 1.48564 1.04555 1.10601 1.67569 1.20123 0.84050 0.89201 0.79031 1.90727 1.73853 1.27145 1.50785 1.23020 0.92585 1.04714 0.80534 0.81919 1.92959 1.82985 1.97307 1.40969 1.20232 0.82484 0.74679 0.82702 1.93257 1.75853 1.51200 1.94368 1.93246 1.74436 1.50383 1.96473 1.93225 1.82115 1.95835 1.43412 1.22432 0.98658 0.80347 1.00366 0.92490 0.92707 0.91747 0.93383 0.87948 0.89429 0.88983 0.91368 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.03 11.39 21.45 0.24 -45.79 16 2 C 0.02 1.12 5.30 84.65 0.45 1.57 16 3 Si 0.95 39.32 29.54 68.60 2.03 41.35 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.53 -25.38 8.57 25.60 0.22 -25.16 16 8 H 0.06 2.85 7.75 -2.91 -0.02 2.83 16 9 C 0.03 1.52 2.27 -11.36 -0.03 1.49 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.11 -3.70 5.13 30.72 0.16 -3.54 16 12 C -0.12 -3.61 6.08 30.67 0.19 -3.42 16 13 C 0.11 3.20 6.42 86.36 0.55 3.75 16 14 N -0.58 -21.07 2.97 -818.90 -2.43 -23.50 16 15 C 0.49 18.72 6.79 87.66 0.59 19.31 16 16 O -0.55 -22.37 14.99 -3.04 -0.05 -22.41 16 17 C 0.03 1.14 3.39 29.85 0.10 1.25 16 18 H 0.16 5.81 5.36 -2.39 -0.01 5.80 16 19 F -0.16 -6.30 17.03 44.97 0.77 -5.53 16 20 C 0.45 14.93 2.85 71.98 0.21 15.13 16 21 F -0.17 -5.77 15.94 44.97 0.72 -5.05 16 22 F -0.16 -5.09 17.30 44.97 0.78 -4.31 16 23 F -0.16 -5.15 17.02 44.97 0.77 -4.38 16 24 C 0.10 4.09 5.28 86.36 0.46 4.55 16 25 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 2.62 7.03 -2.39 -0.02 2.60 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.10 4.17 3.26 -2.39 -0.01 4.16 16 Total: -1.00 -53.70 288.29 6.87 -46.83 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.15 Total: 7.88 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 2.90 Total: 14.93 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -2.19 Total: -69.29 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 9 Polarization: -22.31 SS G_CDS: 3.03 Total: -19.28 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -53.70 6.87 -46.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.494 kcal (2) G-P(sol) polarization free energy of solvation -53.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds