Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99891 * 179.97438 * 16 15 14 19 19 C 1.45197 * 117.00245 * 180.02562 * 18 16 15 20 20 C 1.52993 * 109.47588 * 179.97438 * 19 18 16 21 21 F 1.39905 * 109.46851 * 64.99412 * 20 19 18 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 1.09006 * 109.46954 * 300.00348 * 19 18 16 31 31 H 1.09007 * 109.47437 * 59.99363 * 19 18 16 32 32 H 1.08996 * 109.47473 * 184.99502 * 20 19 18 33 33 H 1.09004 * 109.47243 * 304.99882 * 20 19 18 34 34 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 35 35 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7913 -9.3284 0.0484 18 8 5.5974 -9.2558 2.2580 19 6 6.3762 -10.4789 2.3333 20 6 6.5422 -10.8886 3.7980 21 9 5.2919 -11.2120 4.3363 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 5.8614 -11.2715 1.7900 31 1 7.3578 -10.3127 1.8894 32 1 7.1999 -11.7555 3.8606 33 1 6.9766 -10.0616 4.3597 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858938244.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -139.285843 kcal Electronic energy + Delta-G solvation = -20752.103201 eV Core-core repulsion = 17051.384042 eV Total energy + Delta-G solvation = -3700.719159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.94552 -40.47742 -39.19351 -37.35573 -36.46969 -34.58389 -32.41977 -31.29242 -30.32143 -29.80287 -26.04951 -24.93701 -23.38851 -22.09715 -21.45658 -20.70193 -18.98102 -18.10741 -17.19429 -17.11969 -17.01728 -16.04207 -15.91816 -15.25826 -15.07159 -14.82941 -14.57284 -14.15887 -13.81085 -13.68778 -13.50669 -13.12295 -12.82364 -12.76025 -12.16537 -11.77632 -11.72215 -11.44501 -11.39256 -11.01733 -10.90319 -10.84400 -10.74034 -10.63869 -10.50842 -9.46839 -9.15764 -8.94556 -8.32303 -7.38254 -6.55970 -4.14763 1.75928 2.09955 2.38267 2.77899 3.07077 3.08083 3.12786 3.88048 3.96671 4.23075 4.37622 4.49861 4.55239 4.77435 4.98367 5.04082 5.11787 5.19031 5.34802 5.39079 5.61030 5.73477 5.77290 6.08543 6.14161 6.30585 6.35732 6.55828 6.76349 6.91772 7.09958 7.22394 7.31693 7.44572 7.67516 7.88621 8.28554 8.89221 9.56755 10.61409 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.002655 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.809532 B =10543.108739 C =10679.657359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.162 3.838 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.220 4.220 14 C 0.197 3.803 15 N -0.699 5.699 16 C 0.644 3.356 17 O -0.580 6.580 18 O -0.369 6.369 19 C 0.053 3.947 20 C 0.066 3.934 21 F -0.211 7.211 22 C -0.047 4.047 23 C -0.238 4.238 24 H 0.272 0.728 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -15.491 4.605 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.107 3.893 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.222 4.222 14 C 0.076 3.924 15 N -0.358 5.358 16 C 0.397 3.603 17 O -0.470 6.470 18 O -0.284 6.284 19 C -0.023 4.023 20 C 0.011 3.989 21 F -0.192 7.192 22 C -0.066 4.066 23 C -0.257 4.257 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.615 -15.595 4.178 19.889 hybrid contribution 0.344 0.994 0.281 1.088 sum 11.959 -14.601 4.459 19.393 Atomic orbital electron populations 1.70033 1.06034 1.27957 1.45182 1.25335 0.95870 0.98983 0.96273 0.85682 0.78936 0.79837 0.78824 1.19761 1.20164 1.19105 1.21372 0.91902 0.80688 1.53038 0.88851 1.83978 1.34564 1.11592 1.77230 1.19456 0.90335 0.88051 0.91424 1.20216 0.99738 0.90236 1.11294 1.20547 0.92695 0.96935 0.96772 1.19131 0.93550 0.93202 1.16273 1.20012 0.98872 0.92594 0.80928 1.45225 1.55174 1.23927 1.11427 1.18210 0.78902 0.81722 0.81477 1.90984 1.55957 1.61563 1.38458 1.86270 1.69618 1.41687 1.30775 1.23587 0.96654 0.84679 0.97370 1.22116 0.82429 1.02189 0.92140 1.92818 1.44548 1.94411 1.87426 1.20647 0.98430 0.91625 0.95875 1.21159 0.93762 0.98983 1.11816 0.91814 0.86270 0.86824 0.91145 0.91187 0.75569 0.89975 0.89360 0.88258 0.89477 0.87290 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.61 9.49 30.89 0.29 -10.31 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.70 9.76 0.05 0.00 -4.70 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 13 C -0.22 -3.44 5.25 -104.58 -0.55 -3.99 16 14 C 0.20 2.68 5.80 -5.19 -0.03 2.65 16 15 N -0.70 -9.12 5.55 -66.47 -0.37 -9.49 16 16 C 0.64 9.03 8.75 54.05 0.47 9.50 16 17 O -0.58 -9.52 16.13 -19.28 -0.31 -9.83 16 18 O -0.37 -4.48 10.27 -40.33 -0.41 -4.90 16 19 C 0.05 0.46 5.93 37.15 0.22 0.68 16 20 C 0.07 0.42 7.93 37.15 0.29 0.71 16 21 F -0.21 -2.15 17.35 2.25 0.04 -2.11 16 22 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 23 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 28 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.41 4.94 8.57 -40.82 -0.35 4.59 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -31.85 318.07 -5.56 -37.41 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.85 Total: 5.91 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.18 Total: -8.19 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.39 Total: -33.20 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.72 Total: -19.43 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.85 -5.56 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858938244.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.878 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds