Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99891 * 179.97438 * 16 15 14 19 19 C 1.45197 * 117.00245 * 180.02562 * 18 16 15 20 20 C 1.52993 * 109.47588 * 179.97438 * 19 18 16 21 21 F 1.39905 * 109.46851 * 64.99412 * 20 19 18 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 30 30 H 1.09006 * 109.46954 * 300.00348 * 19 18 16 31 31 H 1.09007 * 109.47437 * 59.99363 * 19 18 16 32 32 H 1.08996 * 109.47473 * 184.99502 * 20 19 18 33 33 H 1.09004 * 109.47243 * 304.99882 * 20 19 18 34 34 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 35 35 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7913 -9.3284 0.0484 18 8 5.5974 -9.2558 2.2580 19 6 6.3762 -10.4789 2.3333 20 6 6.5422 -10.8886 3.7980 21 9 5.2919 -11.2120 4.3363 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 4.2983 -7.1684 1.6738 30 1 5.8614 -11.2715 1.7900 31 1 7.3578 -10.3127 1.8894 32 1 7.1999 -11.7555 3.8606 33 1 6.9766 -10.0616 4.3597 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858938244.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -161.300991 kcal Electronic energy + Delta-G solvation = -20753.057849 eV Core-core repulsion = 17051.384042 eV Total energy + Delta-G solvation = -3701.673807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.59393 -41.52988 -40.79954 -38.76953 -37.67168 -35.81574 -34.29461 -32.13539 -31.82650 -31.07135 -27.72590 -26.43087 -24.11339 -23.65569 -22.53298 -22.09643 -20.08816 -19.82403 -18.83818 -18.06317 -17.94903 -16.83973 -16.77441 -16.40749 -16.34025 -16.06541 -16.04020 -15.58355 -15.39411 -15.09625 -14.68797 -14.39839 -14.11601 -14.03090 -13.64048 -13.30663 -13.04223 -12.56296 -12.40664 -12.36788 -12.27018 -12.11003 -12.01490 -11.78400 -11.70666 -11.21010 -10.81591 -10.24931 -9.81429 -9.04269 -8.48737 -6.16999 0.43408 0.57889 1.25689 1.36324 1.46097 1.53382 1.70651 2.17158 2.77659 3.09066 3.28693 3.48128 3.59820 3.82274 3.83925 4.02033 4.06404 4.16994 4.30321 4.41305 4.43633 4.55950 4.69212 4.79572 4.85734 5.02713 5.13924 5.14806 5.26013 5.34178 5.51821 5.68690 5.72925 6.01107 6.14898 6.37799 6.96115 7.24227 7.75082 8.74104 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.002655 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.809532 B =10543.108739 C =10679.657359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.206 4.206 12 C -0.041 4.041 13 C -0.187 4.187 14 C 0.202 3.798 15 N -0.694 5.694 16 C 0.647 3.353 17 O -0.605 6.605 18 O -0.375 6.375 19 C 0.043 3.957 20 C 0.065 3.935 21 F -0.234 7.234 22 C -0.041 4.041 23 C -0.245 4.245 24 H 0.273 0.727 25 H 0.115 0.885 26 H 0.149 0.851 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.415 0.585 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.704 -17.462 4.859 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.226 4.226 12 C -0.059 4.059 13 C -0.188 4.188 14 C 0.081 3.919 15 N -0.354 5.354 16 C 0.400 3.600 17 O -0.497 6.497 18 O -0.289 6.289 19 C -0.032 4.032 20 C 0.011 3.989 21 F -0.216 7.216 22 C -0.060 4.060 23 C -0.264 4.264 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.166 0.834 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.251 0.749 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.509 -17.628 4.452 23.262 hybrid contribution -0.367 1.156 0.202 1.229 sum 14.143 -16.473 4.654 22.204 Atomic orbital electron populations 1.70177 1.08066 1.28904 1.48532 1.26597 0.96821 1.02801 0.95757 0.84586 0.77881 0.74545 0.79229 1.18883 1.19732 1.17485 1.21851 0.92621 0.81305 1.53218 0.87787 1.83949 1.36118 1.12696 1.80668 1.20022 0.91700 0.87941 0.93014 1.20452 1.00131 0.90439 1.11531 1.20910 0.93091 0.97066 0.94853 1.19425 0.93410 0.93895 1.12076 1.19956 0.99075 0.91428 0.81474 1.45008 1.55085 1.23907 1.11352 1.18221 0.78540 0.81551 0.81702 1.90971 1.57008 1.62317 1.39420 1.86284 1.70019 1.42976 1.29585 1.23956 0.96818 0.83160 0.99231 1.22432 0.81722 1.04338 0.90431 1.92771 1.46454 1.94670 1.87685 1.20971 0.99981 0.90651 0.94360 1.21257 0.92958 1.00169 1.12039 0.91779 0.86666 0.83378 0.90160 0.90121 0.74880 0.90529 0.87858 0.84375 0.88135 0.83959 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.67 21.62 0.30 -55.11 16 2 C -0.02 -1.21 5.49 84.84 0.47 -0.75 16 3 Si 1.02 41.71 29.55 68.60 2.03 43.74 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.41 -23.35 9.49 67.92 0.64 -22.71 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.29 9.76 -22.72 -0.22 -13.51 16 10 C 0.12 5.86 6.65 22.58 0.15 6.01 16 11 C -0.21 -8.19 9.99 22.39 0.22 -7.97 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.02 16 13 C -0.19 -5.18 5.25 -19.84 -0.10 -5.29 16 14 C 0.20 4.64 5.80 85.63 0.50 5.13 16 15 N -0.69 -15.65 5.55 -594.62 -3.30 -18.95 16 16 C 0.65 16.22 8.75 129.79 1.14 17.35 16 17 O -0.61 -18.19 16.13 19.80 0.32 -17.87 16 18 O -0.37 -8.14 10.27 -55.50 -0.57 -8.71 16 19 C 0.04 0.64 5.93 71.98 0.43 1.06 16 20 C 0.06 0.63 7.93 71.98 0.57 1.20 16 21 F -0.23 -4.32 17.35 44.97 0.78 -3.54 16 22 C -0.04 -1.27 9.69 22.25 0.22 -1.05 16 23 C -0.25 -9.89 9.17 22.39 0.21 -9.68 16 24 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 26 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 28 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.41 8.59 8.57 -92.71 -0.79 7.80 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 Total: -1.00 -73.59 318.07 4.31 -69.28 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.34 Total: 22.38 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.65 Total: -17.71 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -3.01 Total: -74.06 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.47 Total: -40.09 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -73.59 4.31 -69.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858938244.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.023 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds