Wall clock time and date at job start Tue Mar 31 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48495 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47122 * 300.01034 * 3 2 1 6 6 H 1.48496 * 109.46738 * 60.00561 * 3 2 1 7 7 C 1.37879 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99871 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47268 * 175.27702 * 9 7 2 11 11 C 1.46897 * 111.00101 * 71.29759 * 10 9 7 12 12 C 1.52998 * 109.47341 * 189.99913 * 11 10 9 13 13 S 1.81404 * 109.47383 * 180.02562 * 12 11 10 14 14 C 1.81391 * 103.00271 * 180.02562 * 13 12 11 15 15 F 1.39903 * 109.47381 * 60.00028 * 14 13 12 16 16 F 1.39903 * 109.47423 * 180.02562 * 14 13 12 17 17 F 1.39903 * 109.47253 * 300.00103 * 14 13 12 18 18 C 1.46893 * 111.00248 * 195.25627 * 10 9 7 19 19 C 1.53000 * 109.47114 * 67.50396 * 18 10 9 20 20 C 1.52998 * 117.49932 * 243.13081 * 19 18 10 21 21 C 1.53000 * 117.49649 * 174.50773 * 19 18 10 22 22 H 0.96993 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46925 * 55.27312 * 9 7 2 24 24 H 1.09004 * 109.46739 * 295.27420 * 9 7 2 25 25 H 1.09000 * 109.47376 * 310.00419 * 11 10 9 26 26 H 1.09005 * 109.47241 * 70.00255 * 11 10 9 27 27 H 1.08992 * 109.47406 * 300.00283 * 12 11 10 28 28 H 1.09007 * 109.47136 * 60.00602 * 12 11 10 29 29 H 1.08997 * 109.47319 * 187.50932 * 18 10 9 30 30 H 1.09005 * 109.46825 * 307.50269 * 18 10 9 31 31 H 1.08994 * 115.54946 * 28.84064 * 19 18 10 32 32 H 1.08999 * 117.49996 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.49931 * 145.02075 * 20 19 18 34 34 H 1.08997 * 117.49978 * 214.97516 * 21 19 18 35 35 H 1.08999 * 117.49942 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2015 -3.6134 -0.1152 11 6 2.9691 -3.7804 1.1261 12 6 4.1095 -4.7729 0.8910 13 16 5.0569 -4.9798 2.4240 14 6 6.3415 -6.1705 1.9525 15 9 7.1113 -5.6386 0.9123 16 9 7.1627 -6.4315 3.0546 17 9 5.7410 -7.3602 1.5268 18 6 1.5120 -4.8582 -0.4794 19 6 0.9647 -4.7403 -1.9032 20 6 -0.5531 -4.8069 -2.0844 21 6 0.3215 -5.9849 -2.5182 22 1 -0.4850 0.8400 0.0004 23 1 0.5621 -2.5210 -0.8449 24 1 0.6898 -2.5947 0.9290 25 1 3.3815 -2.8185 1.4306 26 1 2.3137 -4.1593 1.9104 27 1 3.6971 -5.7348 0.5866 28 1 4.7650 -4.3940 0.1067 29 1 2.2136 -5.6908 -0.4276 30 1 0.6886 -5.0335 0.2131 31 1 1.5228 -4.0815 -2.5684 32 1 -1.1617 -4.9351 -1.1893 33 1 -0.9938 -4.1916 -2.8688 34 1 0.4561 -6.1447 -3.5879 35 1 0.2880 -6.8876 -1.9082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886029866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:51 Heat of formation + Delta-G solvation = -115.640678 kcal Electronic energy + Delta-G solvation = -20148.466159 eV Core-core repulsion = 16473.128767 eV Total energy + Delta-G solvation = -3675.337392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.35952 -47.99338 -47.93926 -38.06035 -35.78812 -32.75169 -30.60362 -27.75703 -26.73029 -25.16077 -22.80583 -21.99170 -20.98906 -19.72080 -19.31967 -18.80601 -18.75095 -16.59425 -15.99684 -15.53056 -15.00011 -14.80717 -14.73686 -14.59007 -14.36643 -14.23318 -14.08286 -14.06426 -13.79433 -13.41475 -12.88335 -12.23079 -12.09852 -12.00210 -11.27624 -11.19947 -10.98165 -10.85309 -10.69831 -10.67823 -10.56225 -10.00281 -9.94440 -9.44049 -9.22218 -8.49641 -8.47350 -7.46596 -6.06981 -4.08656 0.03986 1.73780 2.89687 3.28821 3.36882 3.41363 3.73488 3.75326 4.13834 4.38532 4.67806 4.91227 4.99362 5.21595 5.27428 5.29512 5.52107 5.58100 5.83608 5.88740 5.90578 6.02924 6.17859 6.24110 6.33515 6.41490 6.70359 7.15809 7.24531 7.72705 7.98190 8.06857 8.43118 8.98505 9.55907 11.03561 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.005099 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.113887 B = 5490.214514 C = 7201.447081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.527 5.527 11 C 0.080 3.920 12 C -0.088 4.088 13 S -0.166 6.166 14 C 0.462 3.538 15 F -0.169 7.169 16 F -0.155 7.155 17 F -0.172 7.172 18 C 0.080 3.920 19 C -0.131 4.131 20 C -0.177 4.177 21 C -0.189 4.189 22 H 0.261 0.739 23 H 0.046 0.954 24 H -0.011 1.011 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 -13.194 1.327 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.253 5.253 11 C -0.050 4.050 12 C -0.237 4.237 13 S 0.054 5.946 14 C 0.300 3.700 15 F -0.151 7.151 16 F -0.136 7.136 17 F -0.154 7.154 18 C -0.048 4.048 19 C -0.149 4.149 20 C -0.214 4.214 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.007 0.993 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.412 -12.527 1.926 14.683 hybrid contribution 0.154 0.023 -0.544 0.566 sum 7.566 -12.504 1.382 14.681 Atomic orbital electron populations 1.69958 1.06039 1.26719 1.50888 1.24965 0.94836 0.99273 0.95360 0.86479 0.80162 0.83506 0.77533 1.19598 1.21023 1.21104 1.21193 0.93523 0.89914 1.50194 0.91827 1.19809 0.90090 0.86749 0.96447 1.62144 1.28238 1.04545 1.30357 1.21629 0.92502 0.98396 0.92457 1.23939 1.00665 1.05105 0.93945 1.88221 1.31577 1.52546 1.22278 1.22832 0.86180 0.84227 0.76732 1.93319 1.77288 1.85535 1.58965 1.93235 1.73303 1.94150 1.52924 1.93303 1.82719 1.49207 1.90168 1.21696 0.96309 0.93144 0.93658 1.22221 0.95042 0.99829 0.97852 1.22973 0.94047 1.01239 1.03162 1.22947 1.06196 0.92875 1.00625 0.92949 0.93584 0.99348 0.88322 0.94725 0.88799 0.87479 0.91854 0.95450 0.86889 0.89200 0.89043 0.89263 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.64 8.52 -34.44 -0.29 -13.93 16 8 H 0.06 1.69 7.37 -52.49 -0.39 1.30 16 9 C 0.19 4.72 4.60 -4.98 -0.02 4.70 16 10 N -0.53 -10.33 4.45 -236.07 -1.05 -11.38 16 11 C 0.08 1.39 4.81 -3.83 -0.02 1.37 16 12 C -0.09 -1.22 5.86 37.16 0.22 -1.00 16 13 S -0.17 -2.19 21.77 -107.50 -2.34 -4.53 16 14 C 0.46 5.69 3.51 101.05 0.35 6.04 16 15 F -0.17 -2.16 17.34 2.25 0.04 -2.12 16 16 F -0.15 -1.88 17.36 2.25 0.04 -1.84 16 17 F -0.17 -2.10 17.34 2.25 0.04 -2.06 16 18 C 0.08 1.33 5.11 -3.83 -0.02 1.31 16 19 C -0.13 -2.11 4.73 -90.62 -0.43 -2.54 16 20 C -0.18 -2.69 10.05 -26.73 -0.27 -2.96 16 21 C -0.19 -2.47 10.25 -26.73 -0.27 -2.74 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.05 1.20 6.87 -51.93 -0.36 0.85 16 24 H -0.01 -0.30 8.06 -51.93 -0.42 -0.72 16 25 H 0.10 1.90 6.96 -51.93 -0.36 1.54 16 26 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.09 1.19 6.34 -51.93 -0.33 0.86 16 28 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 29 H 0.06 0.91 6.04 -51.93 -0.31 0.60 16 30 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 31 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 32 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -27.36 319.96 -8.25 -35.60 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.66 Total: -1.23 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.85 Total: -8.28 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.31 Total: -36.48 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.12 Total: -6.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.34 Total: -4.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.36 -8.25 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.036 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds