Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48495 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47122 * 300.01034 * 3 2 1 6 6 H 1.48496 * 109.46738 * 60.00561 * 3 2 1 7 7 C 1.37879 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99871 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47268 * 175.27702 * 9 7 2 11 11 C 1.46897 * 111.00101 * 71.29759 * 10 9 7 12 12 C 1.52998 * 109.47341 * 189.99913 * 11 10 9 13 13 S 1.81404 * 109.47383 * 180.02562 * 12 11 10 14 14 C 1.81391 * 103.00271 * 180.02562 * 13 12 11 15 15 F 1.39903 * 109.47381 * 60.00028 * 14 13 12 16 16 F 1.39903 * 109.47423 * 180.02562 * 14 13 12 17 17 F 1.39903 * 109.47253 * 300.00103 * 14 13 12 18 18 C 1.46893 * 111.00248 * 195.25627 * 10 9 7 19 19 C 1.53000 * 109.47114 * 67.50396 * 18 10 9 20 20 C 1.52998 * 117.49932 * 243.13081 * 19 18 10 21 21 C 1.53000 * 117.49649 * 174.50773 * 19 18 10 22 22 H 0.96993 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46925 * 55.27312 * 9 7 2 24 24 H 1.09004 * 109.46739 * 295.27420 * 9 7 2 25 25 H 1.09000 * 109.47376 * 310.00419 * 11 10 9 26 26 H 1.09005 * 109.47241 * 70.00255 * 11 10 9 27 27 H 1.08992 * 109.47406 * 300.00283 * 12 11 10 28 28 H 1.09007 * 109.47136 * 60.00602 * 12 11 10 29 29 H 1.08997 * 109.47319 * 187.50932 * 18 10 9 30 30 H 1.09005 * 109.46825 * 307.50269 * 18 10 9 31 31 H 1.08994 * 115.54946 * 28.84064 * 19 18 10 32 32 H 1.08999 * 117.49996 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.49931 * 145.02075 * 20 19 18 34 34 H 1.08997 * 117.49978 * 214.97516 * 21 19 18 35 35 H 1.08999 * 117.49942 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2015 -3.6134 -0.1152 11 6 2.9691 -3.7804 1.1261 12 6 4.1095 -4.7729 0.8910 13 16 5.0569 -4.9798 2.4240 14 6 6.3415 -6.1705 1.9525 15 9 7.1113 -5.6386 0.9123 16 9 7.1627 -6.4315 3.0546 17 9 5.7410 -7.3602 1.5268 18 6 1.5120 -4.8582 -0.4794 19 6 0.9647 -4.7403 -1.9032 20 6 -0.5531 -4.8069 -2.0844 21 6 0.3215 -5.9849 -2.5182 22 1 -0.4850 0.8400 0.0004 23 1 0.5621 -2.5210 -0.8449 24 1 0.6898 -2.5947 0.9290 25 1 3.3815 -2.8185 1.4306 26 1 2.3137 -4.1593 1.9104 27 1 3.6971 -5.7348 0.5866 28 1 4.7650 -4.3940 0.1067 29 1 2.2136 -5.6908 -0.4276 30 1 0.6886 -5.0335 0.2131 31 1 1.5228 -4.0815 -2.5684 32 1 -1.1617 -4.9351 -1.1893 33 1 -0.9938 -4.1916 -2.8688 34 1 0.4561 -6.1447 -3.5879 35 1 0.2880 -6.8876 -1.9082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886029866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -130.086798 kcal Electronic energy + Delta-G solvation = -20149.092590 eV Core-core repulsion = 16473.128767 eV Total energy + Delta-G solvation = -3675.963822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.34819 -48.97673 -48.92840 -39.46992 -37.14416 -34.77374 -32.04734 -29.50516 -27.76249 -26.72873 -24.52366 -23.14569 -22.43451 -21.06766 -20.40716 -19.79085 -19.74546 -18.56745 -17.35451 -16.87233 -16.43130 -16.20824 -15.83480 -15.78078 -15.54957 -15.34444 -15.19593 -15.06985 -15.04538 -14.84258 -14.39129 -13.92617 -13.59244 -13.30163 -12.97129 -12.68562 -12.52665 -12.37894 -12.30077 -12.21182 -11.80528 -11.66068 -11.35412 -11.06470 -10.69781 -10.55088 -9.56036 -9.10177 -8.17728 -6.26544 -1.00195 0.62384 1.41646 1.43380 1.55685 1.90759 2.41834 2.74871 2.76013 2.94279 3.14019 3.25320 3.67243 3.78971 3.98921 4.09848 4.24045 4.33583 4.56047 4.58867 4.72998 4.80891 4.84226 4.87613 5.05915 5.21470 5.28406 5.33517 5.43724 5.68373 6.07971 6.28703 6.58830 6.88973 7.42681 8.93013 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.005099 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.113887 B = 5490.214514 C = 7201.447081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.212 3.788 10 N -0.533 5.533 11 C 0.083 3.917 12 C -0.078 4.078 13 S -0.168 6.168 14 C 0.471 3.529 15 F -0.170 7.170 16 F -0.152 7.152 17 F -0.168 7.168 18 C 0.083 3.917 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.150 4.150 22 H 0.263 0.737 23 H 0.023 0.977 24 H -0.041 1.041 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.021 0.979 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 -14.421 1.069 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.258 5.258 11 C -0.047 4.047 12 C -0.226 4.226 13 S 0.053 5.947 14 C 0.310 3.690 15 F -0.152 7.152 16 F -0.133 7.133 17 F -0.150 7.150 18 C -0.045 4.045 19 C -0.174 4.174 20 C -0.231 4.231 21 C -0.187 4.187 22 H 0.072 0.928 23 H 0.041 0.959 24 H -0.024 1.024 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.738 -13.774 1.668 16.397 hybrid contribution -0.245 0.346 -0.440 0.611 sum 8.492 -13.428 1.228 15.936 Atomic orbital electron populations 1.70078 1.07571 1.27640 1.52004 1.25809 0.95630 1.02846 0.95039 0.85451 0.79157 0.79182 0.77563 1.18729 1.20637 1.20662 1.21521 0.93636 0.91156 1.49565 0.91910 1.19387 0.90129 0.88141 0.93805 1.62028 1.27384 1.04839 1.31520 1.21503 0.93319 0.98361 0.91498 1.23703 0.99604 1.04834 0.94506 1.88260 1.31957 1.53122 1.21405 1.22585 0.85787 0.83970 0.76695 1.93323 1.77272 1.85587 1.59004 1.93245 1.73131 1.94076 1.52868 1.93313 1.82658 1.48915 1.90112 1.21778 0.96638 0.92359 0.93728 1.22164 0.95306 1.02347 0.97554 1.23001 0.93599 1.03308 1.03185 1.23034 1.01893 0.91988 1.01812 0.92834 0.95907 1.02370 0.90690 0.94714 0.86927 0.87316 0.88865 0.96047 0.88906 0.89730 0.89537 0.87428 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.52 -28.44 8.52 25.60 0.22 -28.22 16 8 H 0.06 3.37 7.37 -2.91 -0.02 3.35 16 9 C 0.21 10.69 4.60 85.56 0.39 11.08 16 10 N -0.53 -21.01 4.45 -900.80 -4.00 -25.02 16 11 C 0.08 2.85 4.81 86.30 0.41 3.26 16 12 C -0.08 -2.03 5.86 71.98 0.42 -1.61 16 13 S -0.17 -4.12 21.77 -56.49 -1.23 -5.35 16 14 C 0.47 10.54 3.51 113.37 0.40 10.94 16 15 F -0.17 -3.96 17.34 44.97 0.78 -3.18 16 16 F -0.15 -3.37 17.36 44.97 0.78 -2.59 16 17 F -0.17 -3.66 17.34 44.97 0.78 -2.88 16 18 C 0.08 2.68 5.11 86.30 0.44 3.12 16 19 C -0.16 -4.91 4.73 -10.79 -0.05 -4.96 16 20 C -0.19 -5.85 10.05 30.59 0.31 -5.54 16 21 C -0.15 -3.54 10.25 30.59 0.31 -3.23 16 22 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.02 1.25 6.87 -2.39 -0.02 1.23 16 24 H -0.04 -2.29 8.06 -2.38 -0.02 -2.31 16 25 H 0.07 2.93 6.96 -2.39 -0.02 2.91 16 26 H 0.03 1.19 8.12 -2.38 -0.02 1.17 16 27 H 0.11 2.52 6.34 -2.39 -0.02 2.50 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.09 2.43 6.04 -2.39 -0.01 2.42 16 30 H 0.02 0.72 7.84 -2.38 -0.02 0.70 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -59.24 319.96 3.83 -55.41 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.09 Total: 7.08 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 3.32 Total: -14.44 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.72 Total: -79.73 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.34 Total: -8.64 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.23 Total: -5.35 kcal Total: -59.24 3.83 -55.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886029866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.672 kcal (2) G-P(sol) polarization free energy of solvation -59.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds