Wall clock time and date at job start Tue Mar 31 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47007 * 2 1 4 4 H 1.09000 * 109.47066 * 306.15293 * 3 2 1 5 5 C 1.50707 * 109.47150 * 186.15408 * 3 2 1 6 6 H 1.08005 * 119.99428 * 335.10748 * 5 3 2 7 7 C 1.37869 * 120.00129 * 155.10129 * 5 3 2 8 8 N 1.31516 * 120.00006 * 357.15717 * 7 5 3 9 9 Si 1.86806 * 119.99967 * 176.88446 * 7 5 3 10 10 H 1.48500 * 109.47267 * 90.00237 * 9 7 5 11 11 H 1.48501 * 109.46905 * 210.00097 * 9 7 5 12 12 H 1.48499 * 109.46755 * 329.99970 * 9 7 5 13 13 N 1.46494 * 109.47383 * 66.15481 * 3 2 1 14 14 C 1.38317 * 119.99968 * 274.99654 * 13 3 2 15 15 N 1.32414 * 119.81194 * 354.46838 * 14 13 3 16 16 C 1.31853 * 121.78733 * 179.97438 * 15 14 13 17 17 C 1.38469 * 121.20717 * 359.97438 * 16 15 14 18 18 Cl 1.73599 * 120.26365 * 180.02562 * 17 16 15 19 19 C 1.38426 * 119.47887 * 0.02562 * 17 16 15 20 20 C 1.39986 * 118.35543 * 359.72874 * 19 17 16 21 21 C 1.47434 * 120.60275 * 180.26283 * 20 19 17 22 22 N 1.34770 * 119.99879 * 5.04746 * 21 20 19 23 23 O 1.21602 * 119.99966 * 185.04772 * 21 20 19 24 24 H 1.09000 * 109.47525 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47458 * 300.00488 * 1 2 3 26 26 H 1.09000 * 109.47071 * 60.00549 * 1 2 3 27 27 H 1.08995 * 109.46982 * 239.99664 * 2 1 3 28 28 H 1.09006 * 109.46813 * 119.99811 * 2 1 3 29 29 H 0.96994 * 120.00009 * 5.15228 * 8 7 5 30 30 H 0.96999 * 120.00108 * 95.00378 * 13 3 2 31 31 H 1.08011 * 119.39563 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.82204 * 179.97438 * 19 17 16 33 33 H 0.97006 * 120.00066 * 359.97438 * 22 21 20 34 34 H 0.97003 * 120.00058 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5894 1.9871 -0.8298 5 6 3.5393 1.4452 -0.1523 6 1 4.1147 0.5842 0.1542 7 6 4.1763 2.5468 -0.6831 8 7 3.4715 3.5725 -1.1081 9 14 6.0408 2.5854 -0.7915 10 1 6.4728 2.0178 -2.0940 11 1 6.5140 3.9887 -0.6817 12 1 6.6176 1.7804 0.3150 13 7 1.6763 2.0890 1.2632 14 6 0.4295 2.6700 1.4090 15 7 -0.3908 2.7371 0.3718 16 6 -1.5877 3.2818 0.4670 17 6 -2.0423 3.8104 1.6633 18 17 -3.6230 4.5214 1.7612 19 6 -1.2264 3.7675 2.7807 20 6 0.0383 3.1800 2.6584 21 6 0.9453 3.1025 3.8181 22 7 0.5227 3.5068 5.0323 23 8 2.0747 2.6739 3.6790 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5101 3.5867 -0.9804 30 1 2.3099 2.1098 1.9974 31 1 -2.2256 3.3157 -0.4040 32 1 -1.5589 4.1737 3.7247 33 1 -0.3782 3.8491 5.1431 34 1 1.1195 3.4562 5.7952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:14 Heat of formation + Delta-G solvation = -13.155912 kcal Electronic energy + Delta-G solvation = -20468.393914 eV Core-core repulsion = 17233.773286 eV Total energy + Delta-G solvation = -3234.620628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44149 -38.51978 -36.71670 -35.93855 -33.86574 -32.60051 -32.02198 -31.59803 -28.96436 -26.30001 -24.57491 -23.19237 -22.23341 -21.01583 -19.93324 -18.03132 -17.56369 -16.93917 -16.70206 -15.57228 -15.20027 -14.98712 -14.33464 -14.09649 -13.82880 -13.78365 -13.25196 -12.93738 -12.82417 -12.75651 -12.26614 -11.81522 -11.07058 -11.03410 -10.82666 -10.79372 -10.45515 -10.17374 -10.07819 -9.99896 -9.67743 -9.56975 -9.27470 -9.00349 -8.77711 -8.44860 -6.92367 -6.52904 -4.34007 1.04048 1.66617 2.37154 3.12035 3.36839 3.42081 3.57902 3.60490 4.11698 4.22756 4.42779 4.78279 4.83087 5.09868 5.24275 5.49239 5.67725 5.85541 5.95311 6.00235 6.06914 6.16552 6.54866 6.64795 6.76718 6.82315 6.88310 7.02021 7.28451 7.36231 7.78401 8.00428 8.27823 8.32217 8.39657 8.69110 9.05570 9.45941 10.84410 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.005792 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.200484 B = 4833.166674 C = 5335.091177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.231 3.769 4 H 0.064 0.936 5 C -0.606 4.606 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.888 5.888 9 Si 1.072 2.928 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.645 5.645 14 C 0.456 3.544 15 N -0.521 5.521 16 C 0.206 3.794 17 C -0.195 4.195 18 Cl -0.083 7.083 19 C 0.019 3.981 20 C -0.295 4.295 21 C 0.580 3.420 22 N -0.855 5.855 23 O -0.540 6.540 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.277 0.723 30 H 0.417 0.583 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.398 0.602 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 0.723 8.767 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.131 3.869 4 H 0.082 0.918 5 C -0.645 4.645 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.899 3.101 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.275 5.275 14 C 0.210 3.790 15 N -0.239 5.239 16 C 0.038 3.962 17 C -0.229 4.229 18 Cl -0.055 7.055 19 C -0.007 4.007 20 C -0.308 4.308 21 C 0.368 3.632 22 N -0.419 5.419 23 O -0.418 6.418 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.267 0.733 31 H 0.176 0.824 32 H 0.151 0.849 33 H 0.227 0.773 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.196 0.856 7.035 11.610 hybrid contribution -1.880 -0.196 2.128 2.846 sum -11.076 0.660 9.162 14.389 Atomic orbital electron populations 1.21834 0.97296 0.98875 1.01715 1.21808 0.94071 0.99034 1.00702 1.19194 0.95531 0.88897 0.83237 0.91788 1.22138 0.91110 1.04304 1.46910 0.92511 1.26014 1.07235 0.92321 0.92090 1.70721 1.09805 1.31403 1.40220 0.83512 0.73792 0.76207 0.76548 1.21122 1.20911 1.21168 1.48110 1.09565 1.49956 1.19912 1.18883 0.87791 0.85678 0.86612 1.67784 1.04208 1.22161 1.29716 1.22645 0.91045 0.87424 0.95111 1.21224 0.90137 1.14078 0.97429 1.98311 1.25295 1.83278 1.98576 1.21134 0.90763 0.91655 0.97171 1.19882 0.97578 1.18220 0.95078 1.17886 0.86233 0.76192 0.82854 1.43611 1.18841 1.69059 1.10345 1.90563 1.20204 1.47191 1.83855 0.94995 0.93917 0.92383 0.91949 0.93709 0.91104 0.73299 0.82372 0.84949 0.77346 0.76711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.54 37.16 0.32 -2.33 16 2 C -0.12 -2.54 5.58 -26.73 -0.15 -2.69 16 3 C 0.23 5.72 1.92 -69.08 -0.13 5.59 16 4 H 0.06 1.72 6.05 -51.93 -0.31 1.41 16 5 C -0.61 -16.54 8.50 -34.44 -0.29 -16.83 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.03 0.91 5.46 -17.82 -0.10 0.81 16 8 N -0.89 -26.29 13.62 55.43 0.75 -25.53 16 9 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.65 -15.11 5.03 -54.87 -0.28 -15.38 16 14 C 0.46 9.39 5.89 -155.15 -0.91 8.47 16 15 N -0.52 -10.11 6.87 -12.17 -0.08 -10.19 16 16 C 0.21 3.23 10.96 -17.46 -0.19 3.04 16 17 C -0.20 -2.75 6.33 -39.43 -0.25 -3.00 16 18 Cl -0.08 -0.98 28.98 -51.86 -1.50 -2.48 16 19 C 0.02 0.27 9.42 -38.86 -0.37 -0.10 16 20 C -0.29 -5.10 5.91 -104.65 -0.62 -5.72 16 21 C 0.58 9.77 8.03 -12.52 -0.10 9.67 16 22 N -0.85 -9.39 8.83 30.43 0.27 -9.12 16 23 O -0.54 -11.36 14.50 5.28 0.08 -11.29 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.83 5.70 -51.93 -0.30 0.53 16 26 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.28 8.31 6.70 -40.82 -0.27 8.03 16 30 H 0.42 10.31 5.09 -40.93 -0.21 10.10 16 31 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 32 H 0.13 1.31 6.54 -52.48 -0.34 0.97 16 33 H 0.40 3.11 6.95 -40.82 -0.28 2.83 16 34 H 0.40 3.76 8.93 -40.82 -0.36 3.40 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -31.11 299.68 -7.51 -38.62 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -3.39 Total: 14.21 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.79 Total: -3.08 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.66 Total: -60.23 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.11 -7.51 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.466 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds