Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46991 * 2 1 4 4 C 1.46904 * 111.00050 * 294.32580 * 3 2 1 5 5 C 1.50702 * 109.47070 * 294.04442 * 4 3 2 6 6 H 1.07998 * 119.99912 * 356.41951 * 5 4 3 7 7 C 1.37879 * 119.99931 * 176.41809 * 5 4 3 8 8 N 1.31521 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47086 * 90.00309 * 9 7 5 11 11 H 1.48504 * 109.46996 * 210.00029 * 9 7 5 12 12 H 1.48498 * 109.47327 * 330.00203 * 9 7 5 13 13 C 1.38535 * 110.99959 * 58.27650 * 3 2 1 14 14 N 1.33202 * 120.69816 * 236.04497 * 13 3 2 15 15 C 1.31882 * 120.70648 * 180.02562 * 14 13 3 16 16 Cl 1.73599 * 119.01126 * 179.97438 * 15 14 13 17 17 N 1.32088 * 121.97867 * 359.96738 * 15 14 13 18 18 C 1.32143 * 120.70840 * 0.02939 * 17 15 14 19 19 C 1.38349 * 119.24167 * 359.72698 * 18 17 15 20 20 C 1.50762 * 107.48355 * 179.83315 * 19 18 17 21 21 O 1.44014 * 105.99582 * 342.88371 * 20 19 18 22 22 C 1.43994 * 104.93036 * 27.90845 * 21 20 19 23 23 H 1.08993 * 109.47300 * 62.81530 * 1 2 3 24 24 H 1.09006 * 109.46785 * 182.81429 * 1 2 3 25 25 H 1.09005 * 109.47429 * 302.81172 * 1 2 3 26 26 H 1.09003 * 109.46935 * 120.00040 * 2 1 3 27 27 H 1.08997 * 109.46893 * 240.00180 * 2 1 3 28 28 H 1.09010 * 109.46870 * 54.04396 * 4 3 2 29 29 H 1.08992 * 109.47202 * 174.04242 * 4 3 2 30 30 H 0.96990 * 119.99646 * 179.97438 * 8 7 5 31 31 H 1.09001 * 110.31418 * 223.64742 * 20 19 18 32 32 H 1.09005 * 110.00484 * 101.95488 * 20 19 18 33 33 H 1.08995 * 110.15389 * 212.69844 * 22 21 20 34 34 H 1.09008 * 110.14388 * 90.96050 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6625 2.0697 -1.2497 5 6 2.3944 1.4286 -2.4006 6 1 3.1021 0.6342 -2.2151 7 6 2.1605 1.8563 -3.6903 8 7 1.2990 2.8241 -3.9161 9 14 3.0682 1.0622 -5.1167 10 1 2.2829 -0.0925 -5.6219 11 1 3.2440 2.0559 -6.2063 12 1 4.3994 0.5920 -4.6562 13 6 1.5440 2.0797 1.1001 14 7 0.8613 3.2130 0.9456 15 6 0.4088 3.8748 1.9927 16 17 -0.4751 5.3475 1.7405 17 7 0.6078 3.4507 3.2277 18 6 1.2764 2.3345 3.4584 19 6 1.7647 1.6058 2.3886 20 6 2.4778 0.4013 2.9487 21 8 2.7205 0.6942 4.3377 22 6 1.6643 1.5966 4.7166 23 1 -0.3633 0.4695 -0.9141 24 1 -0.3633 -1.0265 0.0505 25 1 -0.3634 0.5569 0.8637 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.5877 1.9902 -1.4131 29 1 1.9428 3.1207 -1.1811 30 1 1.1347 3.1252 -4.8233 31 1 3.4220 0.2442 2.4273 32 1 1.8464 -0.4824 2.8559 33 1 2.0226 2.2994 5.4688 34 1 0.8119 1.0364 5.1012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = 24.855916 kcal Electronic energy + Delta-G solvation = -20456.552819 eV Core-core repulsion = 17223.580507 eV Total energy + Delta-G solvation = -3232.972312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68299 -38.78942 -37.75863 -36.54667 -33.27907 -32.82262 -31.53569 -29.93470 -28.73213 -27.22429 -25.31821 -23.65490 -22.83329 -22.21817 -20.37130 -18.13667 -17.07485 -16.59419 -16.48337 -15.91218 -15.42566 -15.18101 -14.57213 -14.47171 -14.10309 -13.54430 -13.46981 -12.91901 -12.84789 -12.53254 -12.14794 -11.78060 -11.62005 -11.38202 -11.27989 -10.96001 -10.91828 -10.86425 -10.55753 -10.44885 -10.26594 -10.09374 -9.45338 -9.13265 -9.04831 -8.55844 -7.82040 -6.14150 -4.19029 0.81229 1.16892 1.52657 3.23978 3.31360 3.34116 3.54851 3.64448 3.70812 4.09631 4.30189 4.40894 4.65690 5.10553 5.12252 5.20714 5.21426 5.28159 5.40232 5.45727 5.52192 5.67953 5.69132 5.88962 6.11629 6.29112 6.40099 6.50676 6.67574 7.09972 7.21581 7.51297 7.65860 7.91346 8.09527 8.24115 8.86547 9.45235 10.95810 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.005993 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.502010 B = 4671.116956 C = 5864.069797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.062 3.938 3 N -0.462 5.462 4 C 0.195 3.805 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.419 3.581 14 N -0.523 5.523 15 C 0.394 3.606 16 Cl 0.023 6.977 17 N -0.525 5.525 18 C 0.159 3.841 19 C -0.275 4.275 20 C 0.111 3.889 21 O -0.354 6.354 22 C 0.107 3.893 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -3.806 13.884 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.063 4.063 3 N -0.176 5.176 4 C 0.073 3.927 5 C -0.564 4.564 6 H 0.083 0.917 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.179 3.821 14 N -0.246 5.246 15 C 0.098 3.902 16 Cl 0.050 6.950 17 N -0.247 5.247 18 C 0.013 3.987 19 C -0.284 4.284 20 C 0.034 3.966 21 O -0.272 6.272 22 C 0.029 3.971 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.966 -2.902 13.603 14.047 hybrid contribution -0.095 -0.505 -1.097 1.212 sum -2.061 -3.407 12.506 13.124 Atomic orbital electron populations 1.22415 0.97158 1.01956 1.02649 1.22255 0.93470 0.86913 1.03701 1.59164 1.50395 1.03881 1.04148 1.19933 0.96578 0.94910 0.81310 1.21087 1.24621 1.20300 0.90430 0.91734 1.24952 0.95233 0.95029 0.98879 1.69974 1.33998 1.27313 1.21238 0.86483 0.80127 0.78978 0.81759 1.20587 1.21113 1.19727 1.19616 0.83955 0.88118 0.90458 1.68285 1.12944 1.09962 1.33378 1.22707 0.92497 0.90531 0.84417 1.98421 1.71804 1.28441 1.96297 1.66879 1.19702 1.15037 1.23053 1.22220 0.90508 0.89078 0.96885 1.21966 1.08921 1.02758 0.94777 1.21553 1.00804 0.93250 0.81003 1.89169 1.48489 1.64383 1.25156 1.21604 0.91829 0.91346 0.92293 0.90561 0.91907 0.94152 0.91438 0.87508 0.95828 0.93526 0.92639 0.87498 0.90198 0.86971 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.34 37.16 0.35 -2.64 16 2 C 0.06 1.04 5.62 -3.82 -0.02 1.02 16 3 N -0.46 -9.48 4.75 -174.50 -0.83 -10.31 16 4 C 0.20 4.89 3.84 -4.97 -0.02 4.87 16 5 C -0.53 -13.90 8.36 -34.44 -0.29 -14.19 16 6 H 0.06 1.65 7.27 -52.49 -0.38 1.27 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.42 8.12 4.87 -154.82 -0.75 7.37 16 14 N -0.52 -10.85 8.76 -10.93 -0.10 -10.94 16 15 C 0.39 7.29 8.17 -91.83 -0.75 6.54 16 16 Cl 0.02 0.36 29.26 -51.86 -1.52 -1.15 16 17 N -0.53 -8.90 10.41 -7.88 -0.08 -8.98 16 18 C 0.16 2.41 7.56 -82.30 -0.62 1.79 16 19 C -0.28 -4.43 5.80 -104.25 -0.60 -5.03 16 20 C 0.11 1.41 5.99 36.04 0.22 1.63 16 21 O -0.35 -4.44 11.73 -35.23 -0.41 -4.85 16 22 C 0.11 1.19 7.63 36.12 0.28 1.47 16 23 H 0.08 1.46 6.55 -51.93 -0.34 1.12 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.67 7.02 -51.93 -0.36 0.30 16 26 H 0.07 0.92 5.31 -51.93 -0.28 0.64 16 27 H 0.11 1.89 6.79 -51.93 -0.35 1.54 16 28 H 0.02 0.64 6.26 -51.92 -0.33 0.31 16 29 H 0.05 1.31 7.55 -51.93 -0.39 0.92 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 0.86 7.36 -51.93 -0.38 0.48 16 33 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -29.84 296.69 -8.71 -38.55 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.64 Total: -2.09 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.32 Total: 4.42 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.27 Total: -55.03 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.41 Total: -4.85 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.15 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.84 -8.71 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.407 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds