Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46911 * 2 1 4 4 C 1.46500 * 120.00375 * 270.00114 * 3 2 1 5 5 C 1.50698 * 109.46875 * 269.99969 * 4 3 2 6 6 H 1.07997 * 120.00281 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99721 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00008 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47351 * 89.99975 * 9 7 5 11 11 H 1.48502 * 109.47167 * 210.00054 * 9 7 5 12 12 H 1.48502 * 109.47105 * 329.99856 * 9 7 5 13 13 C 1.39033 * 119.99475 * 90.00328 * 3 2 1 14 14 C 1.39522 * 119.62325 * 4.99323 * 13 3 2 15 15 C 1.38196 * 119.31695 * 179.97438 * 14 13 3 16 16 C 1.38996 * 118.57253 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.40239 * 179.97438 * 16 15 14 18 18 C 1.39227 * 119.18786 * 0.27565 * 16 15 14 19 19 C 1.48065 * 119.69038 * 179.72158 * 18 16 15 20 20 N 1.34774 * 120.00216 * 179.97438 * 19 18 16 21 21 O 1.21531 * 119.99578 * 0.02562 * 19 18 16 22 22 N 1.32011 * 119.61873 * 184.97822 * 13 3 2 23 23 H 1.08997 * 109.47314 * 299.99740 * 1 2 3 24 24 H 1.09001 * 109.47180 * 59.99712 * 1 2 3 25 25 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47314 * 240.00260 * 2 1 3 27 27 H 1.09001 * 109.47180 * 120.00288 * 2 1 3 28 28 H 1.08998 * 109.46839 * 29.99605 * 4 3 2 29 29 H 1.08997 * 109.47204 * 150.00041 * 4 3 2 30 30 H 0.96999 * 119.99704 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.33876 * 0.02562 * 14 13 3 32 32 H 1.08003 * 120.71783 * 179.97438 * 15 14 13 33 33 H 0.96998 * 119.99776 * 359.97438 * 20 19 18 34 34 H 0.96996 * 120.00346 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8778 8 7 3.3490 3.1260 -3.6179 9 14 5.9130 2.0959 -3.4175 10 1 5.9760 0.8748 -4.2602 11 1 6.3922 3.2630 -4.2007 12 1 6.7734 1.9162 -2.2205 13 6 2.2500 2.0365 1.2041 14 6 2.1157 1.3398 2.4054 15 6 2.3481 1.9972 3.5986 16 6 2.7093 3.3388 3.5590 17 17 3.0118 4.2110 5.0292 18 6 2.8195 3.9762 2.3261 19 6 3.1975 5.4067 2.2712 20 7 3.3065 6.0298 1.0812 21 8 3.4105 6.0187 3.2994 22 7 2.5949 3.3108 1.1976 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6878 -2.0283 29 1 2.0954 3.1411 -1.1383 30 1 3.6751 3.5165 -4.4438 31 1 1.8339 0.2972 2.4028 32 1 2.2503 1.4799 4.5416 33 1 3.1376 5.5410 0.2606 34 1 3.5545 6.9669 1.0452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = 5.046746 kcal Electronic energy + Delta-G solvation = -20088.916919 eV Core-core repulsion = 16855.085617 eV Total energy + Delta-G solvation = -3233.831302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26457 -38.59926 -36.56776 -35.79066 -33.41817 -32.90257 -32.06758 -30.83576 -29.44391 -26.69902 -24.67632 -23.23732 -22.95925 -21.06951 -19.91087 -17.79333 -16.98766 -16.58145 -16.38387 -15.68678 -15.46939 -14.89526 -14.65069 -14.16626 -14.05001 -13.54670 -13.16056 -12.93953 -12.72414 -12.39923 -12.12915 -11.83165 -11.52154 -11.27257 -11.06556 -10.97936 -10.75804 -10.63266 -10.25393 -9.90915 -9.71572 -9.54817 -9.30514 -9.04425 -8.86091 -8.53100 -6.95861 -6.12531 -4.20005 0.99661 1.62265 2.56964 3.14934 3.22440 3.30176 3.33593 3.49900 3.82108 4.24061 4.35490 4.71396 5.04133 5.17842 5.19831 5.28122 5.28863 5.53637 5.65836 5.74403 5.91811 6.02176 6.15315 6.18022 6.42796 6.49336 6.91933 7.08323 7.31961 7.54759 7.73948 7.81429 8.07073 8.12464 8.43714 8.63262 8.85559 9.45354 10.92160 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.006253 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.012102 B = 4476.771177 C = 5644.579787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.580 5.580 4 C 0.252 3.748 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.422 3.578 14 C -0.222 4.222 15 C -0.035 4.035 16 C -0.120 4.120 17 Cl -0.048 7.048 18 C 0.140 3.860 19 C 0.574 3.426 20 N -0.833 5.833 21 O -0.528 6.528 22 N -0.490 5.490 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.263 0.737 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.418 0.582 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -2.985 9.822 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.287 5.287 4 C 0.133 3.867 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.182 3.818 14 C -0.249 4.249 15 C -0.061 4.061 16 C -0.155 4.155 17 Cl -0.019 7.019 18 C -0.003 4.003 19 C 0.357 3.643 20 N -0.397 5.397 21 O -0.403 6.403 22 N -0.211 5.211 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.250 0.750 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.269 -2.242 9.470 10.627 hybrid contribution 0.997 -0.474 -0.086 1.107 sum -3.273 -2.717 9.384 10.303 Atomic orbital electron populations 1.22226 0.96653 1.01486 1.02461 1.21425 0.93476 0.82865 1.02813 1.47266 1.64922 1.12275 1.04227 1.19344 0.96063 0.93722 0.77617 1.21447 0.96856 1.31945 1.06283 0.92586 1.24889 0.97654 0.94944 0.96320 1.69922 1.35578 1.33393 1.14319 0.86563 0.84823 0.77781 0.78657 1.20669 1.21078 1.19973 1.18373 0.88958 0.87675 0.86769 1.21622 1.10452 1.01539 0.91266 1.21089 0.94627 0.91657 0.98695 1.21381 1.11794 0.94046 0.88283 1.98349 1.94402 1.76113 1.33081 1.20567 0.97795 0.94322 0.87567 1.17849 0.77008 0.85508 0.83974 1.43718 1.71500 1.15094 1.09342 1.90873 1.49976 1.66135 1.33318 1.67326 1.17792 1.08449 1.27509 0.92880 0.92061 0.92074 0.89655 0.91517 0.95168 0.93257 0.92683 0.84269 0.84182 0.75023 0.76915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.12 1.75 5.97 -4.04 -0.02 1.73 16 3 N -0.58 -11.04 2.57 -175.19 -0.45 -11.49 16 4 C 0.25 5.87 5.22 -5.19 -0.03 5.84 16 5 C -0.53 -13.62 9.39 -34.44 -0.32 -13.94 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.42 7.82 7.37 -155.18 -1.14 6.68 16 14 C -0.22 -3.33 9.27 -39.12 -0.36 -3.69 16 15 C -0.03 -0.50 9.96 -39.32 -0.39 -0.89 16 16 C -0.12 -2.02 6.37 -38.93 -0.25 -2.26 16 17 Cl -0.05 -0.77 26.01 -51.86 -1.35 -2.12 16 18 C 0.14 2.58 6.75 -83.00 -0.56 2.02 16 19 C 0.57 10.35 8.07 -12.23 -0.10 10.25 16 20 N -0.83 -12.89 8.86 30.58 0.27 -12.61 16 21 O -0.53 -10.22 14.76 5.34 0.08 -10.14 16 22 N -0.49 -9.66 8.25 -8.97 -0.07 -9.73 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 27 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 28 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.14 1.69 6.02 -52.49 -0.32 1.37 16 32 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.42 6.85 8.15 -40.82 -0.33 6.52 16 34 H 0.40 5.10 8.93 -40.82 -0.36 4.74 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -29.45 309.78 -7.81 -37.26 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.78 Total: 6.66 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -2.90 Total: 5.58 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.48 Total: -57.59 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.35 Total: -2.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.45 -7.81 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.311 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds