Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47540 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46847 * 120.00345 * 9 7 5 12 12 H 1.48508 * 109.47264 * 239.99931 * 9 7 5 13 13 C 1.39032 * 119.99695 * 90.00348 * 3 2 1 14 14 C 1.39079 * 119.63434 * 4.72875 * 13 3 2 15 15 C 1.39544 * 118.95854 * 179.73516 * 14 13 3 16 16 C 1.48166 * 120.87181 * 180.23415 * 15 14 13 17 17 N 1.34776 * 119.99339 * 180.29428 * 16 15 14 18 18 O 1.21513 * 120.00088 * 0.30026 * 16 15 14 19 19 C 1.39960 * 118.24948 * 0.52503 * 15 14 13 20 20 C 1.38127 * 119.16344 * 359.73073 * 19 15 14 21 21 Cl 1.73601 * 119.52028 * 179.97438 * 20 19 15 22 22 N 1.32010 * 120.96782 * 0.02562 * 20 19 15 23 23 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 28 28 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 29 29 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 30 30 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.52302 * 359.97438 * 14 13 3 32 32 H 0.96996 * 120.00480 * 359.97438 * 17 16 15 33 33 H 0.97007 * 119.99667 * 180.02562 * 17 16 15 34 34 H 1.07995 * 120.41930 * 179.70686 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -1.6345 4.1521 -2.4166 11 1 -0.2950 5.8417 -3.5259 12 1 -0.9946 3.8612 -4.7379 13 6 2.2500 2.0366 1.2041 14 6 2.1109 1.3437 2.4020 15 6 2.3523 2.0138 3.6020 16 6 2.2217 1.3155 4.9022 17 7 2.4534 1.9814 6.0509 18 8 1.9059 0.1425 4.9330 19 6 2.7151 3.3644 3.5452 20 6 2.8261 3.9803 2.3139 21 17 3.2748 5.6554 2.2327 22 7 2.5949 3.3142 1.1979 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.0642 2.7986 -1.1384 29 1 2.5505 1.3453 -2.0283 30 1 2.0709 4.0820 -4.4446 31 1 1.8243 0.3025 2.4033 32 1 2.7060 2.9176 6.0263 33 1 2.3682 1.5242 6.9022 34 1 2.9055 3.9180 4.4527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -0.385033 kcal Electronic energy + Delta-G solvation = -19900.466094 eV Core-core repulsion = 16666.399253 eV Total energy + Delta-G solvation = -3234.066841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42100 -38.94588 -36.81458 -35.92819 -33.99274 -32.80438 -32.18653 -30.61019 -29.45314 -26.73646 -24.68753 -23.55599 -22.57801 -21.40759 -19.95815 -18.23629 -17.30543 -16.50053 -16.24623 -15.68924 -15.46312 -14.95981 -14.76170 -14.58618 -14.11663 -13.96526 -13.63094 -12.98997 -12.71127 -12.15751 -11.97514 -11.58759 -11.36959 -11.19631 -11.02283 -10.92834 -10.68865 -10.53168 -10.33530 -10.13894 -9.93539 -9.87738 -9.48612 -9.03173 -9.00525 -8.42938 -7.00155 -6.02736 -4.07818 0.93714 1.44948 2.08034 2.96813 3.29116 3.29532 3.37243 3.40763 3.65697 4.14005 4.43908 4.66313 5.07382 5.15738 5.28416 5.30157 5.37396 5.51114 5.72637 5.83002 5.86573 6.09753 6.20473 6.31268 6.47355 6.60401 6.77180 6.97464 7.13767 7.38299 7.68189 7.87985 8.07466 8.10377 8.22187 8.52554 8.95795 9.56185 11.03608 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.005926 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.942736 B = 4723.674749 C = 5890.945782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.577 5.577 4 C 0.251 3.749 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.437 3.563 14 C -0.194 4.194 15 C -0.047 4.047 16 C 0.572 3.428 17 N -0.848 5.848 18 O -0.535 6.535 19 C -0.221 4.221 20 C 0.234 3.766 21 Cl -0.041 7.041 22 N -0.501 5.501 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.404 0.596 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -2.044 15.723 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.283 5.283 4 C 0.132 3.868 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.199 3.801 14 C -0.221 4.221 15 C -0.057 4.057 16 C 0.357 3.643 17 N -0.412 5.412 18 O -0.411 6.411 19 C -0.247 4.247 20 C 0.066 3.934 21 Cl -0.013 7.013 22 N -0.221 5.221 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.165 0.835 32 H 0.233 0.767 33 H 0.235 0.765 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.722 -2.304 14.314 14.600 hybrid contribution -0.824 0.807 0.619 1.309 sum 0.898 -1.496 14.933 15.035 Atomic orbital electron populations 1.22228 0.96065 1.01118 1.03460 1.21464 0.94677 0.82113 1.02069 1.47402 1.64316 1.12273 1.04275 1.19403 0.97701 0.92338 0.77359 1.21436 0.97373 1.30794 1.05995 0.92365 1.24894 0.96284 0.96290 0.96470 1.69932 1.27378 1.41768 1.14322 0.86512 0.83371 0.79642 0.78305 1.19903 1.20920 1.21075 1.18025 0.88980 0.86506 0.86629 1.21611 1.08055 1.02075 0.90377 1.19680 0.99736 0.93228 0.93105 1.18176 0.75973 0.85980 0.84160 1.43710 1.73187 1.15998 1.08345 1.90804 1.46883 1.15886 1.87567 1.21253 1.11658 0.94568 0.97217 1.21010 0.95844 0.87598 0.88961 1.98387 1.90398 1.13817 1.98656 1.66414 1.18023 1.07727 1.29893 0.93113 0.90546 0.92570 0.91528 0.90154 0.93395 0.95049 0.92846 0.83523 0.76662 0.76455 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.12 1.99 6.01 -4.04 -0.02 1.97 16 3 N -0.58 -11.87 2.57 -175.23 -0.45 -12.32 16 4 C 0.25 6.25 5.19 -5.19 -0.03 6.22 16 5 C -0.52 -14.00 8.92 -34.44 -0.31 -14.31 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.44 8.69 7.37 -155.06 -1.14 7.54 16 14 C -0.19 -3.28 8.83 -38.78 -0.34 -3.62 16 15 C -0.05 -0.69 5.90 -104.69 -0.62 -1.31 16 16 C 0.57 7.58 8.07 -12.18 -0.10 7.48 16 17 N -0.85 -7.00 8.83 30.60 0.27 -6.73 16 18 O -0.53 -8.86 17.28 5.35 0.09 -8.77 16 19 C -0.22 -3.05 9.37 -38.98 -0.37 -3.41 16 20 C 0.23 4.04 7.26 -17.52 -0.13 3.92 16 21 Cl -0.04 -0.64 29.10 -51.86 -1.51 -2.15 16 22 N -0.50 -10.52 9.11 -9.59 -0.09 -10.60 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.42 7.26 -51.93 -0.38 1.05 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.95 5.98 -51.93 -0.31 0.64 16 27 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 28 H 0.05 1.32 7.45 -51.93 -0.39 0.94 16 29 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.15 2.35 5.71 -52.49 -0.30 2.05 16 32 H 0.40 2.35 6.97 -40.82 -0.28 2.06 16 33 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 34 H 0.13 1.29 6.53 -52.49 -0.34 0.95 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -32.20 310.27 -7.62 -39.82 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.55 Total: 0.94 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.77 Total: 3.75 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.47 Total: -54.86 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.51 Total: -2.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.20 -7.62 -39.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds