Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46505 * 109.47448 * 180.02562 * 7 6 5 9 9 C 1.46501 * 119.99913 * 84.99740 * 8 7 6 10 10 S 1.65599 * 119.99794 * 265.00235 * 8 7 6 11 11 O 1.42101 * 106.39910 * 203.53314 * 10 8 7 12 12 O 1.42096 * 106.40339 * 336.45842 * 10 8 7 13 13 C 1.76205 * 107.21857 * 89.99901 * 10 8 7 14 14 H 1.08004 * 119.99970 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00093 * 180.02562 * 13 10 8 16 16 N 1.31515 * 120.00070 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00132 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47324 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47819 * 119.99515 * 17 15 13 20 20 H 1.48506 * 109.47171 * 239.99572 * 17 15 13 21 21 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 22 22 C 1.38234 * 120.00033 * 0.49775 * 21 5 4 23 23 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 24 24 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 25 25 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 26 26 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 29 29 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 30 30 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 31 31 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 32 32 H 1.09001 * 109.46912 * 90.00361 * 9 8 7 33 33 H 1.08998 * 109.46956 * 210.00304 * 9 8 7 34 34 H 1.09002 * 109.47175 * 330.00445 * 9 8 7 35 35 H 0.97000 * 120.00391 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.99934 * 180.25938 * 21 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7592 -0.0022 1.4249 9 6 8.4907 1.2623 1.3141 10 16 8.5881 -1.4308 1.5439 11 8 9.8729 -1.1075 2.0578 12 8 7.7092 -2.3536 2.1724 13 6 8.8430 -2.0240 -0.0956 14 1 8.4725 -1.4588 -0.9381 15 6 9.5145 -3.2102 -0.3030 16 7 9.9652 -3.8987 0.7229 17 14 9.7853 -3.8388 -2.0410 18 1 9.1864 -2.8868 -3.0106 19 1 11.2420 -3.9608 -2.3021 20 1 9.1423 -5.1688 -2.1922 21 6 3.5805 -1.1972 0.0010 22 6 2.1982 -1.1972 0.0009 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1324 -0.0004 27 1 4.1205 2.1325 0.0001 28 1 6.1400 -0.8891 -0.5270 29 1 6.1401 0.8909 -0.5236 30 1 5.9328 0.8863 1.9473 31 1 5.9327 -0.8937 1.9440 32 1 8.6760 1.6634 2.3105 33 1 9.4413 1.0890 0.8096 34 1 7.8992 1.9752 0.7397 35 1 10.4380 -4.7331 0.5771 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -103.563047 kcal Electronic energy + Delta-G solvation = -20161.388407 eV Core-core repulsion = 17028.431481 eV Total energy + Delta-G solvation = -3132.956926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35059 -37.62877 -37.39506 -36.14520 -35.19820 -34.51456 -31.75038 -31.04658 -28.26991 -27.85378 -25.95629 -23.57841 -23.51515 -21.46734 -20.61498 -19.16457 -18.28927 -17.15869 -17.05428 -16.69086 -16.30223 -16.03677 -15.83754 -15.17028 -14.90192 -14.51068 -14.42240 -14.17339 -13.98179 -13.55967 -13.51227 -13.41212 -13.14580 -13.04310 -12.96431 -12.58648 -12.48887 -12.45206 -12.30096 -12.18082 -11.90232 -11.78067 -11.54042 -11.27263 -10.96609 -9.92596 -9.76796 -9.25118 -8.74602 -7.48105 0.29119 0.48234 0.55967 1.31469 1.32583 1.50041 2.19411 2.57210 2.79166 2.91293 3.76292 3.90882 3.93698 4.11072 4.14199 4.22426 4.29183 4.36094 4.43906 4.61209 4.63584 4.67810 4.77629 4.85095 4.88906 4.94673 4.98081 5.01013 5.17511 5.22680 5.27521 5.35441 5.38705 5.57846 5.76017 5.82887 5.91164 5.99242 6.20470 6.78139 8.20788 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.004951 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.611463 B = 5653.788063 C = 6391.950283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.094 4.094 6 C -0.100 4.100 7 C 0.127 3.873 8 N -1.013 6.013 9 C 0.092 3.908 10 S 2.713 3.287 11 O -1.042 7.042 12 O -1.041 7.041 13 C -1.034 5.034 14 H 0.119 0.881 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.988 3.012 18 H -0.247 1.247 19 H -0.258 1.258 20 H -0.260 1.260 21 C -0.135 4.135 22 C -0.130 4.130 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.298 0.702 36 H 0.108 0.892 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.671 11.193 -5.136 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.132 4.132 5 C -0.094 4.094 6 C -0.139 4.139 7 C 0.002 3.998 8 N -0.851 5.851 9 C -0.053 4.053 10 S 2.815 3.185 11 O -1.033 7.033 12 O -1.032 7.032 13 C -1.168 5.168 14 H 0.138 0.862 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.806 3.194 18 H -0.170 1.170 19 H -0.183 1.183 20 H -0.184 1.184 21 C -0.153 4.153 22 C -0.147 4.147 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.306 10.703 -4.175 19.138 hybrid contribution 0.606 -0.850 -1.009 1.452 sum -14.700 9.853 -5.185 18.441 Atomic orbital electron populations 1.20813 0.89270 1.03573 1.03013 1.20283 0.97560 0.92898 0.99322 1.21337 0.93950 0.98412 1.00451 1.21280 0.94698 0.97489 0.99751 1.19848 0.94830 0.93956 1.00805 1.21047 0.91478 1.03790 0.97578 1.21322 0.78063 1.03733 0.96687 1.57411 1.14783 1.22153 1.90760 1.21567 0.96441 0.85084 1.02235 1.00167 0.71108 0.70821 0.76416 1.93293 1.43075 1.84487 1.82405 1.93283 1.67906 1.63065 1.78900 1.30974 1.49977 1.17949 1.17912 0.86249 1.25998 0.89435 0.94130 1.04610 1.70000 1.32318 1.15866 1.34511 0.85136 0.79445 0.78998 0.75818 1.17002 1.18253 1.18437 1.21277 0.95225 0.97974 1.00825 1.21227 0.93534 0.98812 1.01173 0.90381 0.91197 0.90278 0.83557 0.83934 0.92405 0.88645 0.87879 0.91829 0.92488 0.92286 0.87842 0.89158 0.87368 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.10 -2.06 5.88 -19.86 -0.12 -2.18 16 3 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 4 C -0.11 -2.53 9.70 22.27 0.22 -2.31 16 5 C -0.09 -2.62 5.13 -19.87 -0.10 -2.72 16 6 C -0.10 -3.09 5.67 29.84 0.17 -2.92 16 7 C 0.13 4.39 5.64 86.38 0.49 4.88 16 8 N -1.01 -41.02 3.18 -539.10 -1.72 -42.73 16 9 C 0.09 2.92 10.31 127.77 1.32 4.24 16 10 S 2.71 149.69 4.93 -56.49 -0.28 149.41 16 11 O -1.04 -63.59 17.09 -128.00 -2.19 -65.78 16 12 O -1.04 -63.61 16.57 -128.00 -2.12 -65.73 16 13 C -1.03 -57.49 9.75 67.73 0.66 -56.83 16 14 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 15 C 0.07 3.99 5.46 84.65 0.46 4.45 16 16 N -0.90 -54.18 13.19 21.45 0.28 -53.90 16 17 Si 0.99 41.74 29.54 68.60 2.03 43.76 16 18 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.13 -3.98 9.70 22.27 0.22 -3.76 16 22 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.89 8.09 -2.39 -0.02 0.88 16 25 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 27 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 29 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 30 H 0.10 2.79 8.11 -2.38 -0.02 2.77 16 31 H 0.06 2.54 6.92 -2.38 -0.02 2.52 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 34 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 35 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 36 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -77.60 330.36 1.50 -76.10 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.04 Total: 21.99 kcal Atomic # 6 Polarization: -67.56 SS G_CDS: 4.45 Total: -63.11 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -1.43 Total: -96.63 kcal Atomic # 8 Polarization: -127.20 SS G_CDS: -4.31 Total: -131.51 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 149.69 SS G_CDS: -0.28 Total: 149.41 kcal Total: -77.60 1.50 -76.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.467 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds