Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 N 1.46503 * 109.46972 * 179.97438 * 8 7 6 10 10 C 1.46496 * 120.00118 * 85.00065 * 9 8 7 11 11 S 1.65600 * 119.99837 * 264.99810 * 9 8 7 12 12 O 1.42101 * 106.40273 * 203.54308 * 11 9 8 13 13 O 1.42101 * 106.40396 * 336.45890 * 11 9 8 14 14 C 1.76202 * 107.22044 * 89.99998 * 11 9 8 15 15 H 1.08003 * 119.99706 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00007 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00495 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99770 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47321 * 59.99464 * 18 16 14 20 20 H 1.48503 * 109.46884 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46864 * 299.99836 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 32 32 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 33 33 H 1.08996 * 109.47468 * 90.00253 * 10 9 8 34 34 H 1.09007 * 109.46719 * 209.99787 * 10 9 8 35 35 H 1.08998 * 109.47204 * 329.99340 * 10 9 8 36 36 H 0.96996 * 120.00379 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 7 5.3221 -4.2122 -1.4431 10 6 4.5943 -5.4787 -1.3325 11 16 6.9733 -4.2142 -1.5683 12 8 7.3349 -5.4870 -2.0866 13 8 7.3298 -2.9900 -2.1955 14 6 7.6207 -4.1415 0.0689 15 1 6.9491 -4.1055 0.9140 16 6 8.9844 -4.1293 0.2710 17 7 9.8022 -4.1725 -0.7580 18 14 9.6707 -4.0529 2.0068 19 1 9.2044 -5.2345 2.7760 20 1 11.1547 -4.0508 1.9527 21 1 9.1983 -2.8117 2.6716 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 3.6367 -3.0740 -1.9569 32 1 5.1782 -2.1841 -1.9569 33 1 4.3362 -5.8377 -2.3287 34 1 5.2221 -6.2160 -0.8320 35 1 3.6832 -5.3250 -0.7542 36 1 10.7617 -4.1644 -0.6157 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -103.515554 kcal Electronic energy + Delta-G solvation = -20215.700599 eV Core-core repulsion = 17082.745732 eV Total energy + Delta-G solvation = -3132.954866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36426 -37.61352 -37.39056 -36.14692 -35.18878 -34.26999 -32.88301 -29.79290 -28.26741 -27.66841 -26.78914 -24.09708 -22.78369 -21.31046 -20.57363 -19.16134 -18.28823 -17.33343 -17.05665 -16.90256 -16.30459 -16.07904 -15.69015 -15.16542 -14.90904 -14.48781 -14.38659 -13.97171 -13.93142 -13.70324 -13.50680 -13.41015 -13.15810 -13.01453 -12.96523 -12.60064 -12.49229 -12.48846 -12.33890 -12.17369 -11.97168 -11.72728 -11.55703 -11.24152 -10.98944 -9.98081 -9.58861 -9.36573 -8.74233 -7.48148 0.28842 0.49503 0.53852 1.32646 1.34713 1.47590 2.19561 2.57720 2.78873 2.91026 3.75885 3.88982 3.91382 4.08499 4.14661 4.25163 4.33813 4.36381 4.48331 4.55371 4.64588 4.66679 4.77244 4.81508 4.90726 4.91667 4.97614 5.05705 5.12067 5.21605 5.32005 5.34488 5.38168 5.62937 5.74098 5.81741 5.90509 5.98695 6.20142 6.78052 8.20823 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.005032 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.607700 B = 5562.571962 C = 6251.184612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.147 4.147 6 C -0.082 4.082 7 C -0.101 4.101 8 C 0.128 3.872 9 N -1.013 6.013 10 C 0.092 3.908 11 S 2.713 3.287 12 O -1.042 7.042 13 O -1.041 7.041 14 C -1.036 5.036 15 H 0.120 0.880 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.987 3.013 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.252 1.252 22 C -0.123 4.123 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.298 0.702 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.017 7.005 5.184 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.165 4.165 6 C -0.083 4.083 7 C -0.140 4.140 8 C 0.002 3.998 9 N -0.851 5.851 10 C -0.053 4.053 11 S 2.815 3.185 12 O -1.033 7.033 13 O -1.032 7.032 14 C -1.169 5.169 15 H 0.138 0.862 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.805 3.195 19 H -0.172 1.172 20 H -0.188 1.188 21 H -0.175 1.175 22 C -0.141 4.141 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.153 0.847 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.412 6.930 4.220 19.209 hybrid contribution 1.058 -0.018 1.001 1.456 sum -16.354 6.912 5.221 18.507 Atomic orbital electron populations 1.20819 0.89048 1.03691 1.03090 1.20281 0.97598 0.92750 0.98620 1.21324 0.93851 0.98625 1.01209 1.21348 0.95106 0.97842 0.99592 1.21282 1.00023 0.93296 1.01941 1.19847 0.94478 0.94236 0.99715 1.21063 1.00354 0.94922 0.97639 1.21307 0.97873 0.83974 0.96604 1.57408 1.24721 1.12204 1.90744 1.21566 0.98113 0.83398 1.02249 1.00156 0.70507 0.71418 0.76400 1.93293 1.82326 1.45365 1.82272 1.93284 1.82331 1.48610 1.78940 1.30927 1.01750 1.66423 1.17847 0.86221 1.25995 0.95981 0.87585 1.04576 1.69989 1.06656 1.41538 1.34497 0.85209 0.77715 0.80735 0.75823 1.17246 1.18790 1.17529 1.21149 0.92645 0.98921 1.01337 0.90372 0.90729 0.90462 0.83914 0.84713 0.87419 0.92307 0.88623 0.87909 0.91804 0.92479 0.92276 0.87861 0.89142 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 2 C -0.09 -1.84 5.88 -19.87 -0.12 -1.96 16 3 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 4 C -0.12 -2.92 10.05 22.27 0.22 -2.69 16 5 C -0.15 -4.35 9.70 22.27 0.22 -4.13 16 6 C -0.08 -2.31 5.13 -19.87 -0.10 -2.41 16 7 C -0.10 -3.13 5.67 29.85 0.17 -2.96 16 8 C 0.13 4.41 5.64 86.38 0.49 4.90 16 9 N -1.01 -40.99 3.18 -539.13 -1.72 -42.71 16 10 C 0.09 2.92 10.31 127.77 1.32 4.24 16 11 S 2.71 149.70 4.93 -56.49 -0.28 149.42 16 12 O -1.04 -63.59 17.09 -128.00 -2.19 -65.78 16 13 O -1.04 -63.65 16.57 -128.00 -2.12 -65.77 16 14 C -1.04 -57.52 9.75 67.73 0.66 -56.86 16 15 H 0.12 5.97 7.81 -2.91 -0.02 5.95 16 16 C 0.07 4.01 5.46 84.65 0.46 4.47 16 17 N -0.90 -54.21 13.19 21.45 0.28 -53.93 16 18 Si 0.99 41.66 29.54 68.60 2.03 43.69 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.12 -2.78 9.36 22.27 0.21 -2.57 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 25 H 0.08 0.80 8.09 -2.38 -0.02 0.78 16 26 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 30 H 0.10 2.47 8.09 -2.39 -0.02 2.46 16 31 H 0.10 2.79 8.11 -2.39 -0.02 2.77 16 32 H 0.06 2.55 6.91 -2.39 -0.02 2.53 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 2.03 7.79 -2.38 -0.02 2.01 16 35 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 36 H 0.30 16.27 8.31 -92.71 -0.77 15.50 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -77.46 330.36 1.50 -75.95 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.04 Total: 22.27 kcal Atomic # 6 Polarization: -67.61 SS G_CDS: 4.46 Total: -63.15 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -1.43 Total: -96.64 kcal Atomic # 8 Polarization: -127.24 SS G_CDS: -4.31 Total: -131.54 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 149.70 SS G_CDS: -0.28 Total: 149.42 kcal Total: -77.46 1.50 -75.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.563 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds