Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38227 * 119.99774 * 2 1 4 4 C 1.38241 * 119.99960 * 180.22952 * 3 2 1 5 5 C 1.38234 * 119.99603 * 359.81457 * 4 3 2 6 6 C 1.38230 * 120.00473 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00364 * 179.97438 * 6 5 4 8 8 C 1.38236 * 120.00026 * 179.81889 * 2 1 3 9 9 C 1.50699 * 119.99870 * 359.97438 * 8 2 1 10 10 H 1.09004 * 109.47014 * 191.98145 * 9 8 2 11 11 C 1.52993 * 109.47251 * 71.97758 * 9 8 2 12 12 N 1.46506 * 109.47329 * 311.97414 * 9 8 2 13 13 S 1.65595 * 120.00228 * 214.12543 * 12 9 8 14 14 O 1.42103 * 106.40380 * 311.46741 * 13 12 9 15 15 O 1.42098 * 106.40380 * 178.53867 * 13 12 9 16 16 C 1.76205 * 107.21539 * 65.00200 * 13 12 9 17 17 H 1.07996 * 120.00280 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99723 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00107 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99708 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47123 * 90.00268 * 20 18 16 22 22 H 1.48499 * 109.47136 * 210.00009 * 20 18 16 23 23 H 1.48504 * 109.47421 * 330.00323 * 20 18 16 24 24 H 1.08994 * 109.46728 * 276.18761 * 1 2 3 25 25 H 1.08998 * 109.47283 * 36.19040 * 1 2 3 26 26 H 1.09004 * 109.46786 * 156.18329 * 1 2 3 27 27 H 1.08003 * 120.00686 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00285 * 179.79544 * 4 3 2 29 29 H 1.08001 * 119.99856 * 179.97438 * 5 4 3 30 30 H 1.09010 * 109.46641 * 263.89947 * 7 6 5 31 31 H 1.08999 * 109.47139 * 23.89687 * 7 6 5 32 32 H 1.08998 * 109.47756 * 143.90303 * 7 6 5 33 33 H 1.08996 * 109.47326 * 306.34999 * 11 9 8 34 34 H 1.09000 * 109.47280 * 66.34557 * 11 9 8 35 35 H 1.09000 * 109.47326 * 186.34957 * 11 9 8 36 36 H 0.96998 * 119.99240 * 34.13014 * 12 9 8 37 37 H 0.97003 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1971 -0.0024 7 6 4.3341 -2.5022 -0.0040 8 6 2.1983 -1.1971 0.0038 9 6 1.4448 -2.5022 0.0085 10 1 2.1338 -3.3188 0.2243 11 6 0.8027 -2.7254 -1.3622 12 7 0.4009 -2.4598 1.0357 13 16 -0.0014 -3.8357 1.8647 14 8 -0.1870 -4.8522 0.8892 15 8 -1.0048 -3.4623 2.7989 16 6 1.4090 -4.3057 2.8107 17 1 2.3111 -3.7138 2.7657 18 6 1.3607 -5.4293 3.6084 19 7 0.2623 -6.1504 3.6629 20 14 2.8560 -5.9280 4.6107 21 1 2.7951 -5.2810 5.9461 22 1 2.8715 -7.4036 4.7759 23 1 4.0903 -5.4956 3.9072 24 1 -0.3632 0.1108 1.0216 25 1 -0.3634 0.8294 -0.6068 26 1 -0.3633 -0.9402 -0.4150 27 1 1.6582 2.1325 0.0004 28 1 4.1206 2.1324 -0.0081 29 1 5.3517 0.0000 -0.0099 30 1 4.4176 -2.8722 -1.0259 31 1 5.3309 -2.3468 0.4087 32 1 3.7988 -3.2316 0.6039 33 1 0.2014 -1.8559 -1.6276 34 1 1.5828 -2.8695 -2.1097 35 1 0.1665 -3.6097 -1.3258 36 1 -0.0545 -1.6257 1.2300 37 1 0.2284 -6.9411 4.2238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = -70.927542 kcal Electronic energy + Delta-G solvation = -21080.205431 eV Core-core repulsion = 17948.663687 eV Total energy + Delta-G solvation = -3131.541744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95734 -35.90031 -35.09746 -33.91049 -33.50651 -33.06733 -30.98455 -29.01411 -27.25811 -26.59943 -26.08417 -22.97062 -20.57100 -20.44382 -19.02582 -17.49745 -16.51731 -16.10088 -15.53710 -15.15965 -14.58262 -14.19534 -14.13905 -13.95854 -13.46161 -13.19044 -12.88515 -12.79956 -12.71817 -12.60978 -12.00666 -11.74706 -11.61777 -11.43384 -11.37122 -11.20866 -11.16280 -10.90752 -10.59708 -10.51480 -10.26463 -10.15530 -9.84568 -9.23493 -9.03967 -8.54869 -8.40747 -8.39096 -6.68625 -5.30165 1.48784 1.50671 2.40342 3.07190 3.14198 3.20149 3.84926 4.08004 4.65718 4.77131 4.86250 4.95041 5.03642 5.07423 5.36108 5.41039 5.58314 5.64458 5.70199 5.72001 5.77632 5.82644 5.86000 5.95810 6.00389 6.07552 6.24109 6.34605 6.40472 6.53338 6.58494 6.63501 6.68172 6.80726 7.02613 7.17539 7.34198 7.92570 8.00531 8.90738 10.25538 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.006854 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.230738 B = 4084.051235 C = 4840.571071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.070 4.070 7 C -0.128 4.128 8 C -0.080 4.080 9 C 0.193 3.807 10 H 0.101 0.899 11 C -0.172 4.172 12 N -1.135 6.135 13 S 2.711 3.289 14 O -1.005 7.005 15 O -1.009 7.009 16 C -1.021 5.021 17 H 0.102 0.898 18 C 0.134 3.866 19 N -0.845 5.845 20 Si 0.917 3.083 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.262 1.262 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 11.261 -8.135 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.071 4.071 7 C -0.184 4.184 8 C -0.081 4.081 9 C 0.085 3.915 10 H 0.119 0.881 11 C -0.230 4.230 12 N -0.892 5.892 13 S 2.811 3.189 14 O -0.995 6.995 15 O -0.999 6.999 16 C -1.154 5.154 17 H 0.120 0.880 18 C -0.084 4.084 19 N -0.475 5.475 20 Si 0.741 3.259 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.186 1.186 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.910 10.493 -8.171 14.553 hybrid contribution 1.295 0.331 0.954 1.642 sum 7.205 10.824 -7.217 14.871 Atomic orbital electron populations 1.21304 0.91755 1.04098 1.02671 1.19673 0.95901 0.92445 0.98935 1.20930 0.94218 0.97209 1.02336 1.21026 0.94266 0.97693 1.00787 1.20950 0.99439 0.91954 1.02219 1.19774 0.92956 0.95588 0.98758 1.20977 0.99919 0.94762 1.02743 1.19887 0.93068 0.94823 1.00353 1.19544 0.88688 0.94700 0.88589 0.88142 1.22468 1.01497 1.03111 0.95973 1.56515 1.50911 1.29321 1.52494 1.00500 0.75165 0.70465 0.72757 1.93357 1.87239 1.56208 1.62663 1.93370 1.60518 1.82944 1.63088 1.30578 1.20479 1.20875 1.43493 0.87986 1.24723 0.97096 0.93129 0.93426 1.69896 1.26884 1.15478 1.35233 0.86212 0.81532 0.78055 0.80073 1.19245 1.19977 1.18597 0.90610 0.91522 0.89087 0.86400 0.86491 0.86345 0.90936 0.91618 0.89901 0.92095 0.92157 0.90203 0.76095 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.82 36.01 0.28 -1.54 16 2 C -0.07 -0.99 5.69 -104.62 -0.60 -1.58 16 3 C -0.13 -1.62 9.73 -39.58 -0.39 -2.00 16 4 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.13 -1.61 9.68 -39.59 -0.38 -2.00 16 6 C -0.07 -1.01 5.88 -104.63 -0.62 -1.63 16 7 C -0.13 -1.69 9.35 36.00 0.34 -1.35 16 8 C -0.08 -1.25 4.95 -104.62 -0.52 -1.77 16 9 C 0.19 3.40 2.55 -69.08 -0.18 3.22 16 10 H 0.10 1.86 5.28 -51.93 -0.27 1.58 16 11 C -0.17 -2.70 9.14 37.15 0.34 -2.36 16 12 N -1.13 -22.87 4.89 -5.88 -0.03 -22.90 16 13 S 2.71 71.67 4.94 -107.50 -0.53 71.14 16 14 O -1.00 -28.67 17.13 -57.17 -0.98 -29.65 16 15 O -1.01 -29.75 18.02 -57.17 -1.03 -30.78 16 16 C -1.02 -27.96 9.57 30.60 0.29 -27.67 16 17 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 18 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 19 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 20 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.08 0.96 7.27 -51.93 -0.38 0.58 16 25 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 26 H 0.09 1.24 3.78 -51.93 -0.20 1.05 16 27 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 32 H 0.08 1.25 6.25 -51.93 -0.32 0.93 16 33 H 0.06 0.84 5.67 -51.93 -0.29 0.55 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 36 H 0.40 7.29 4.93 -34.47 -0.17 7.12 16 37 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -34.52 312.29 -8.59 -43.11 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.52 Total: 9.83 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: -1.92 Total: -36.85 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.70 Total: -47.03 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -2.01 Total: -60.43 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 71.67 SS G_CDS: -0.53 Total: 71.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.52 -8.59 -43.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.817 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds