Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38227 * 119.99774 * 2 1 4 4 C 1.38241 * 119.99960 * 180.22952 * 3 2 1 5 5 C 1.38234 * 119.99603 * 359.81457 * 4 3 2 6 6 C 1.38230 * 120.00473 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00364 * 179.97438 * 6 5 4 8 8 C 1.38236 * 120.00026 * 179.81889 * 2 1 3 9 9 C 1.50699 * 119.99870 * 359.97438 * 8 2 1 10 10 H 1.09004 * 109.47014 * 191.98145 * 9 8 2 11 11 C 1.52993 * 109.47251 * 71.97758 * 9 8 2 12 12 N 1.46506 * 109.47329 * 311.97414 * 9 8 2 13 13 S 1.65595 * 120.00228 * 214.12543 * 12 9 8 14 14 O 1.42103 * 106.40380 * 311.46741 * 13 12 9 15 15 O 1.42098 * 106.40380 * 178.53867 * 13 12 9 16 16 C 1.76205 * 107.21539 * 65.00200 * 13 12 9 17 17 H 1.07996 * 120.00280 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99723 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00107 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99708 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47123 * 90.00268 * 20 18 16 22 22 H 1.48499 * 109.47136 * 210.00009 * 20 18 16 23 23 H 1.48504 * 109.47421 * 330.00323 * 20 18 16 24 24 H 1.08994 * 109.46728 * 276.18761 * 1 2 3 25 25 H 1.08998 * 109.47283 * 36.19040 * 1 2 3 26 26 H 1.09004 * 109.46786 * 156.18329 * 1 2 3 27 27 H 1.08003 * 120.00686 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00285 * 179.79544 * 4 3 2 29 29 H 1.08001 * 119.99856 * 179.97438 * 5 4 3 30 30 H 1.09010 * 109.46641 * 263.89947 * 7 6 5 31 31 H 1.08999 * 109.47139 * 23.89687 * 7 6 5 32 32 H 1.08998 * 109.47756 * 143.90303 * 7 6 5 33 33 H 1.08996 * 109.47326 * 306.34999 * 11 9 8 34 34 H 1.09000 * 109.47280 * 66.34557 * 11 9 8 35 35 H 1.09000 * 109.47326 * 186.34957 * 11 9 8 36 36 H 0.96998 * 119.99240 * 34.13014 * 12 9 8 37 37 H 0.97003 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1971 -0.0024 7 6 4.3341 -2.5022 -0.0040 8 6 2.1983 -1.1971 0.0038 9 6 1.4448 -2.5022 0.0085 10 1 2.1338 -3.3188 0.2243 11 6 0.8027 -2.7254 -1.3622 12 7 0.4009 -2.4598 1.0357 13 16 -0.0014 -3.8357 1.8647 14 8 -0.1870 -4.8522 0.8892 15 8 -1.0048 -3.4623 2.7989 16 6 1.4090 -4.3057 2.8107 17 1 2.3111 -3.7138 2.7657 18 6 1.3607 -5.4293 3.6084 19 7 0.2623 -6.1504 3.6629 20 14 2.8560 -5.9280 4.6107 21 1 2.7951 -5.2810 5.9461 22 1 2.8715 -7.4036 4.7759 23 1 4.0903 -5.4956 3.9072 24 1 -0.3632 0.1108 1.0216 25 1 -0.3634 0.8294 -0.6068 26 1 -0.3633 -0.9402 -0.4150 27 1 1.6582 2.1325 0.0004 28 1 4.1206 2.1324 -0.0081 29 1 5.3517 0.0000 -0.0099 30 1 4.4176 -2.8722 -1.0259 31 1 5.3309 -2.3468 0.4087 32 1 3.7988 -3.2316 0.6039 33 1 0.2014 -1.8559 -1.6276 34 1 1.5828 -2.8695 -2.1097 35 1 0.1665 -3.6097 -1.3258 36 1 -0.0545 -1.6257 1.2300 37 1 0.2284 -6.9411 4.2238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -95.446939 kcal Electronic energy + Delta-G solvation = -21081.268672 eV Core-core repulsion = 17948.663687 eV Total energy + Delta-G solvation = -3132.604985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04095 -37.49942 -37.01704 -36.12068 -35.18481 -34.51662 -32.21371 -30.34863 -28.38095 -28.23545 -27.53439 -24.17636 -21.67901 -21.57706 -21.00608 -19.36419 -18.38216 -17.55670 -17.05744 -16.65083 -16.02572 -15.92105 -15.55126 -15.22347 -15.13161 -14.33120 -14.17655 -13.96423 -13.90917 -13.75034 -13.71011 -13.31475 -13.04214 -13.02859 -12.74223 -12.53302 -12.46277 -12.39895 -12.36709 -12.29840 -12.27818 -11.82129 -11.25896 -11.18318 -10.98973 -10.28475 -9.48362 -9.38980 -8.75823 -7.48443 0.28646 0.51439 0.56706 1.32702 1.33098 1.49129 2.19993 2.57610 2.81269 3.04985 3.63258 3.77126 3.91976 4.02360 4.16001 4.17879 4.32575 4.43649 4.52977 4.55018 4.68759 4.69244 4.73158 4.81429 4.87305 4.90138 5.02154 5.07844 5.20224 5.23775 5.29311 5.38716 5.46027 5.64615 5.69754 5.84672 5.90484 6.19615 6.35614 6.77945 8.20807 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.006854 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.230738 B = 4084.051235 C = 4840.571071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.129 4.129 8 C -0.104 4.104 9 C 0.186 3.814 10 H 0.086 0.914 11 C -0.169 4.169 12 N -1.119 6.119 13 S 2.716 3.284 14 O -1.036 7.036 15 O -1.048 7.048 16 C -1.039 5.039 17 H 0.117 0.883 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.985 3.015 21 H -0.257 1.257 22 H -0.261 1.261 23 H -0.245 1.245 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.413 0.587 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 13.306 -8.386 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.185 4.185 8 C -0.105 4.105 9 C 0.080 3.920 10 H 0.104 0.896 11 C -0.228 4.228 12 N -0.882 5.882 13 S 2.817 3.183 14 O -1.026 7.026 15 O -1.039 7.039 16 C -1.172 5.172 17 H 0.135 0.865 18 C -0.141 4.141 19 N -0.525 5.525 20 Si 0.803 3.197 21 H -0.181 1.181 22 H -0.185 1.185 23 H -0.168 1.168 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.252 0.748 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.386 12.552 -8.440 17.295 hybrid contribution 0.528 -0.188 0.950 1.103 sum 8.915 12.363 -7.489 16.983 Atomic orbital electron populations 1.21330 0.91394 1.04547 1.02947 1.19870 0.96442 0.92702 0.99228 1.21259 0.94842 0.97440 1.01403 1.21450 0.94230 0.98757 0.98828 1.21265 1.00772 0.91435 1.01367 1.19979 0.92638 0.96770 0.99181 1.20997 1.00370 0.93913 1.03228 1.19766 0.93693 0.93994 1.03089 1.19714 0.87971 0.96048 0.88283 0.89613 1.22439 1.01964 1.02699 0.95690 1.55973 1.51827 1.27849 1.52541 1.00004 0.74871 0.71072 0.72372 1.93308 1.87682 1.58339 1.63243 1.93303 1.62204 1.83786 1.64583 1.30893 1.21153 1.21498 1.43700 0.86485 1.25977 1.00600 0.92924 0.94577 1.69987 1.29415 1.16464 1.36624 0.85199 0.77480 0.78501 0.78478 1.18131 1.18511 1.16757 0.90904 0.88746 0.90420 0.83915 0.83356 0.83922 0.89633 0.89772 0.92533 0.90235 0.89926 0.92860 0.74807 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 7.82 71.24 0.56 -2.99 16 2 C -0.08 -2.19 5.69 -19.86 -0.11 -2.30 16 3 C -0.13 -2.86 9.73 22.27 0.22 -2.65 16 4 C -0.11 -2.28 10.05 22.27 0.22 -2.06 16 5 C -0.13 -2.88 9.68 22.27 0.22 -2.66 16 6 C -0.08 -2.31 5.88 -19.87 -0.12 -2.43 16 7 C -0.13 -3.26 9.35 71.23 0.67 -2.59 16 8 C -0.10 -3.16 4.95 -19.87 -0.10 -3.26 16 9 C 0.19 6.66 2.55 44.24 0.11 6.78 16 10 H 0.09 3.29 5.28 -2.39 -0.01 3.27 16 11 C -0.17 -5.36 9.14 71.98 0.66 -4.70 16 12 N -1.12 -46.31 4.89 -172.52 -0.84 -47.15 16 13 S 2.72 149.01 4.94 -56.49 -0.28 148.73 16 14 O -1.04 -61.85 17.13 -128.00 -2.19 -64.04 16 15 O -1.05 -64.31 18.02 -128.00 -2.31 -66.62 16 16 C -1.04 -57.97 9.57 67.74 0.65 -57.32 16 17 H 0.12 5.94 7.81 -2.91 -0.02 5.92 16 18 C 0.07 4.05 5.46 84.66 0.46 4.51 16 19 N -0.89 -53.87 13.19 21.45 0.28 -53.59 16 20 Si 0.99 41.55 29.54 68.60 2.03 43.57 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 24 H 0.07 1.79 7.27 -2.39 -0.02 1.78 16 25 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 26 H 0.08 2.09 3.78 -2.39 -0.01 2.08 16 27 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 32 H 0.06 1.72 6.25 -2.39 -0.01 1.71 16 33 H 0.08 2.17 5.67 -2.39 -0.01 2.16 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.95 7.48 -2.39 -0.02 1.93 16 36 H 0.41 15.25 4.93 -96.75 -0.48 14.78 16 37 H 0.30 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -76.45 312.29 0.74 -75.71 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.62 Total: 35.05 kcal Atomic # 6 Polarization: -75.10 SS G_CDS: 3.43 Total: -71.67 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -0.56 Total: -100.73 kcal Atomic # 8 Polarization: -126.16 SS G_CDS: -4.50 Total: -130.66 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 149.01 SS G_CDS: -0.28 Total: 148.73 kcal Total: -76.45 0.74 -75.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.736 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds