Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38245 * 119.99954 * 2 1 4 4 C 1.38230 * 119.99965 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00070 * 180.02562 * 4 3 2 6 6 C 1.38238 * 120.00295 * 359.97438 * 4 3 2 7 7 C 1.38239 * 119.99572 * 0.02562 * 6 4 3 8 8 C 1.50702 * 119.99724 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.46989 * 340.00682 * 8 7 6 10 10 C 1.52998 * 109.46649 * 100.00477 * 8 7 6 11 11 N 1.46498 * 109.47204 * 220.00130 * 8 7 6 12 12 S 1.65602 * 119.99612 * 144.72385 * 11 8 7 13 13 O 1.42104 * 106.40175 * 178.81816 * 12 11 8 14 14 O 1.42095 * 106.40656 * 311.73868 * 12 11 8 15 15 C 1.76203 * 107.21635 * 65.28001 * 12 11 8 16 16 H 1.07994 * 119.99889 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99706 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99786 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00282 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47370 * 89.99815 * 19 17 15 21 21 H 1.48501 * 109.46920 * 209.99965 * 19 17 15 22 22 H 1.48503 * 109.47075 * 329.99362 * 19 17 15 23 23 C 1.38229 * 120.00314 * 180.23276 * 2 1 3 24 24 H 1.09001 * 109.47365 * 89.99890 * 1 2 3 25 25 H 1.08997 * 109.47213 * 210.00190 * 1 2 3 26 26 H 1.09003 * 109.47061 * 329.99753 * 1 2 3 27 27 H 1.08000 * 119.99895 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47345 * 269.97534 * 5 4 3 29 29 H 1.09002 * 109.47179 * 29.97363 * 5 4 3 30 30 H 1.08998 * 109.47477 * 149.97607 * 5 4 3 31 31 H 1.08001 * 120.00080 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.46713 * 179.97438 * 10 8 7 33 33 H 1.08999 * 109.47174 * 299.99287 * 10 8 7 34 34 H 1.08994 * 109.47476 * 60.00376 * 10 8 7 35 35 H 0.97001 * 120.00384 * 325.00862 * 11 8 7 36 36 H 0.96999 * 120.00275 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.00137 * 0.04335 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0001 0.0016 7 6 3.5805 -1.1971 0.0016 8 6 4.3341 -2.5022 0.0022 9 1 5.3522 -2.3340 -0.3488 10 6 4.3714 -3.0687 1.4229 11 7 3.6623 -3.4543 -0.8857 12 16 4.5548 -4.5328 -1.7705 13 8 3.6239 -5.3231 -2.4972 14 8 5.5896 -3.7829 -2.3918 15 6 5.3438 -5.6178 -0.6281 16 1 5.1873 -5.4914 0.4329 17 6 6.1601 -6.6289 -1.0890 18 7 6.7485 -7.4391 -0.2364 19 14 6.4302 -6.8480 -2.9244 20 1 7.6031 -6.0438 -3.3515 21 1 6.6787 -8.2818 -3.2204 22 1 5.2233 -6.3927 -3.6601 23 6 2.1982 -1.1970 -0.0049 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 4.5165 2.8170 -1.0264 29 1 3.7445 3.2620 0.5145 30 1 5.2860 2.3720 0.5156 31 1 5.3517 0.0002 0.0024 32 1 4.9161 -4.0129 1.4233 33 1 4.8713 -2.3603 2.0835 34 1 3.3534 -3.2369 1.7739 35 1 2.6951 -3.4503 -0.9585 36 1 7.3231 -8.1502 -0.5606 37 1 1.6583 -2.1324 -0.0094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -73.606579 kcal Electronic energy + Delta-G solvation = -20352.509476 eV Core-core repulsion = 17220.851560 eV Total energy + Delta-G solvation = -3131.657916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71320 -36.12434 -35.49676 -34.40947 -33.51826 -33.03587 -31.34061 -28.92237 -27.30261 -26.65474 -26.34521 -23.46779 -20.83722 -20.08740 -19.05750 -17.52225 -16.85522 -16.37369 -15.63016 -15.39858 -14.80787 -14.19843 -14.09525 -13.86760 -13.46381 -13.27640 -13.16065 -13.03347 -12.86165 -12.80804 -12.59842 -12.13500 -12.00305 -11.57549 -11.41334 -11.31378 -11.24141 -10.92750 -10.74734 -10.62063 -10.47840 -10.42732 -9.80382 -9.24082 -9.19681 -8.65124 -8.49460 -8.47584 -6.79529 -5.33456 1.41827 1.43620 2.11384 3.08239 3.18819 3.28463 3.76872 3.96461 4.35108 4.60410 4.73477 4.78969 4.82504 5.18420 5.29510 5.30410 5.30842 5.50874 5.53853 5.56039 5.57990 5.62389 5.72397 5.79607 5.80755 5.88571 6.14985 6.16740 6.22923 6.28804 6.47940 6.57232 6.64013 6.69515 6.88294 7.10433 7.48747 7.74125 8.24029 8.71855 10.32203 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.004857 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.226535 B = 5763.996483 C = 5949.406054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.066 4.066 8 C 0.193 3.807 9 H 0.101 0.899 10 C -0.171 4.171 11 N -1.118 6.118 12 S 2.673 3.327 13 O -1.009 7.009 14 O -1.012 7.012 15 C -1.016 5.016 16 H 0.127 0.873 17 C 0.154 3.846 18 N -0.823 5.823 19 Si 0.800 3.200 20 H -0.246 1.246 21 H -0.255 1.255 22 H -0.221 1.221 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.404 0.596 36 H 0.280 0.720 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 15.579 3.326 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.136 4.136 7 C -0.068 4.068 8 C 0.085 3.915 9 H 0.119 0.881 10 C -0.230 4.230 11 N -0.873 5.873 12 S 2.775 3.225 13 O -1.000 7.000 14 O -1.001 7.001 15 C -1.150 5.150 16 H 0.145 0.855 17 C -0.065 4.065 18 N -0.452 5.452 19 Si 0.620 3.380 20 H -0.170 1.170 21 H -0.179 1.179 22 H -0.143 1.143 23 C -0.135 4.135 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.091 0.909 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.321 15.425 2.441 17.248 hybrid contribution -0.033 -0.563 -0.048 0.566 sum -7.354 14.862 2.393 16.754 Atomic orbital electron populations 1.20779 0.91353 1.02582 1.02276 1.19844 0.95867 0.93047 0.99633 1.20826 0.93490 0.97284 1.03093 1.19839 0.93771 0.95133 0.99612 1.20772 0.99877 0.94006 1.02268 1.20938 1.00002 0.91208 1.01466 1.20095 0.93960 0.94825 0.97917 1.19555 0.96008 0.85013 0.90897 0.88091 1.22427 1.02698 1.02730 0.95108 1.55646 1.18546 1.51314 1.61806 1.01406 0.73476 0.73413 0.74195 1.93473 1.64859 1.69114 1.72525 1.93403 1.57581 1.72811 1.76350 1.30569 1.43571 1.29916 1.10976 0.85516 1.24413 0.91161 0.92536 0.98419 1.69985 1.24904 1.14786 1.35537 0.87880 0.83797 0.81234 0.85043 1.17016 1.17943 1.14287 1.20819 0.93650 0.97556 1.01509 0.91238 0.91491 0.91792 0.86494 0.91252 0.91816 0.91473 0.85704 0.89772 0.92044 0.92381 0.76366 0.90929 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.08 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.13 -1.49 9.36 -39.58 -0.37 -1.86 16 4 C -0.08 -1.00 5.88 -104.63 -0.62 -1.62 16 5 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 6 C -0.12 -1.62 9.33 -39.58 -0.37 -1.99 16 7 C -0.07 -1.00 4.96 -104.62 -0.52 -1.52 16 8 C 0.19 3.33 3.12 -69.08 -0.22 3.11 16 9 H 0.10 1.84 7.35 -51.93 -0.38 1.45 16 10 C -0.17 -2.71 9.50 37.16 0.35 -2.36 16 11 N -1.12 -21.63 5.43 -5.88 -0.03 -21.66 16 12 S 2.67 66.81 4.22 -107.50 -0.45 66.36 16 13 O -1.01 -27.30 16.02 -57.17 -0.92 -28.22 16 14 O -1.01 -27.10 16.16 -57.17 -0.92 -28.02 16 15 C -1.02 -27.81 10.12 30.60 0.31 -27.50 16 16 H 0.13 3.41 5.89 -52.49 -0.31 3.10 16 17 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 18 N -0.82 -23.51 13.96 55.43 0.77 -22.73 16 19 Si 0.80 20.62 26.54 -169.99 -4.51 16.11 16 20 H -0.25 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.22 -5.83 5.61 56.52 0.32 -5.51 16 23 C -0.12 -1.61 8.82 -39.59 -0.35 -1.96 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.13 1.57 8.04 -52.49 -0.42 1.15 16 32 H 0.08 1.53 5.79 -51.93 -0.30 1.23 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 6.79 7.07 -34.47 -0.24 6.55 16 36 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.12 1.56 6.80 -52.49 -0.36 1.20 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -32.72 316.80 -8.08 -40.81 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.03 Total: 6.96 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: -1.77 Total: -34.38 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.74 Total: -44.39 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.84 Total: -56.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.51 Total: 16.11 kcal Atomic # 16 Polarization: 66.81 SS G_CDS: -0.45 Total: 66.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.72 -8.08 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.800 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds