Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00428 * 2 1 4 4 C 1.38217 * 120.00038 * 180.29510 * 3 2 1 5 5 C 1.38256 * 120.00138 * 359.70357 * 4 3 2 6 6 C 1.50698 * 120.00139 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46751 * 200.02263 * 6 5 4 8 8 C 1.52995 * 109.47276 * 80.02200 * 6 5 4 9 9 N 1.46502 * 109.46972 * 320.01751 * 6 5 4 10 10 S 1.65596 * 120.00254 * 215.00197 * 9 6 5 11 11 O 1.42100 * 106.40459 * 178.54200 * 10 9 6 12 12 O 1.42105 * 106.40041 * 311.46476 * 10 9 6 13 13 C 1.76204 * 107.21971 * 64.99925 * 10 9 6 14 14 H 1.07998 * 119.99692 * 0.02562 * 13 10 9 15 15 C 1.37872 * 119.99978 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00247 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99784 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47399 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47223 * 120.00443 * 17 15 13 20 20 H 1.48503 * 109.47284 * 240.00354 * 17 15 13 21 21 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 22 22 C 1.38218 * 119.99818 * 179.74300 * 2 1 3 23 23 C 1.50703 * 119.99968 * 0.02562 * 22 2 1 24 24 H 1.08995 * 109.47734 * 270.25764 * 1 2 3 25 25 H 1.09002 * 109.46829 * 30.25709 * 1 2 3 26 26 H 1.09000 * 109.47496 * 150.25022 * 1 2 3 27 27 H 1.07999 * 120.00194 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.99873 * 179.72536 * 4 3 2 29 29 H 1.09005 * 109.47282 * 299.99738 * 8 6 5 30 30 H 1.08991 * 109.47551 * 59.99760 * 8 6 5 31 31 H 1.08997 * 109.47131 * 180.02562 * 8 6 5 32 32 H 0.97005 * 119.99908 * 35.00077 * 9 6 5 33 33 H 0.97006 * 120.00392 * 180.02562 * 16 15 13 34 34 H 1.08009 * 119.99396 * 179.97438 * 21 5 4 35 35 H 1.09002 * 109.47152 * 269.72462 * 23 22 2 36 36 H 1.09001 * 109.46980 * 149.72562 * 23 22 2 37 37 H 1.09004 * 109.47113 * 29.72543 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0062 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0123 7 1 6.1405 -0.9667 -0.3633 8 6 6.2945 0.2530 1.4057 9 7 6.2634 1.0560 -0.9043 10 16 7.6433 0.8234 -1.7897 11 8 7.8239 1.9988 -2.5676 12 8 8.6227 0.3322 -0.8848 13 6 7.3189 -0.4818 -2.9282 14 1 6.3500 -0.9586 -2.9410 15 6 8.3015 -0.8935 -3.8032 16 7 9.4812 -0.3124 -3.7879 17 14 7.9573 -2.2766 -5.0106 18 1 6.5646 -2.7585 -4.8274 19 1 8.1290 -1.7766 -6.3982 20 1 8.9044 -3.3941 -4.7664 21 6 3.5805 -1.1971 -0.0005 22 6 2.1980 -1.1970 0.0054 23 6 1.4444 -2.5021 0.0106 24 1 -0.3634 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6584 2.1326 0.0004 28 1 4.1205 2.1325 -0.0106 29 1 5.9327 1.2195 1.7567 30 1 5.9339 -0.5328 2.0693 31 1 7.3845 0.2534 1.4011 32 1 5.7760 1.8916 -0.9763 33 1 10.1725 -0.6018 -4.4038 34 1 4.1205 -2.1325 -0.0009 35 1 1.2666 -2.8148 1.0396 36 1 2.0316 -3.2627 -0.5040 37 1 0.4901 -2.3727 -0.4999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -110.736789 kcal Electronic energy + Delta-G solvation = -20353.603136 eV Core-core repulsion = 17220.335134 eV Total energy + Delta-G solvation = -3133.268003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72901 -37.65673 -37.18349 -36.13288 -35.19436 -33.53764 -32.97337 -30.53635 -28.36308 -28.21916 -27.06210 -23.73961 -23.04241 -21.05547 -20.74848 -19.33883 -18.39944 -17.59594 -16.99398 -16.41770 -16.14868 -15.91535 -15.60465 -15.27853 -15.06655 -14.50783 -14.20866 -13.99437 -13.89163 -13.52977 -13.44489 -13.33560 -13.24460 -13.04044 -12.72713 -12.53956 -12.48520 -12.42117 -12.35724 -12.29960 -12.20749 -11.71853 -11.58017 -11.27195 -11.00495 -10.30897 -9.60638 -9.28472 -8.76421 -7.48842 0.28539 0.49366 0.54102 1.31754 1.32848 1.50447 2.19945 2.56965 2.79204 3.01952 3.61369 3.77626 3.91707 4.05769 4.17082 4.22710 4.30057 4.41107 4.49144 4.55234 4.67410 4.78116 4.78513 4.88335 4.93432 4.95128 5.05116 5.06676 5.16020 5.27206 5.30864 5.35229 5.44035 5.59017 5.76825 5.79707 5.90099 6.18803 6.35067 6.77730 8.20461 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.005540 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.356681 B = 5053.250819 C = 5848.881883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.094 4.094 6 C 0.191 3.809 7 H 0.081 0.919 8 C -0.161 4.161 9 N -1.115 6.115 10 S 2.721 3.279 11 O -1.047 7.047 12 O -1.036 7.036 13 C -1.039 5.039 14 H 0.116 0.884 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.988 3.012 18 H -0.249 1.249 19 H -0.260 1.260 20 H -0.256 1.256 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.115 4.115 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.412 0.588 33 H 0.299 0.701 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.766 -3.520 8.045 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.095 4.095 6 C 0.084 3.916 7 H 0.099 0.901 8 C -0.219 4.219 9 N -0.874 5.874 10 S 2.822 3.178 11 O -1.037 7.037 12 O -1.026 7.026 13 C -1.172 5.172 14 H 0.134 0.866 15 C -0.142 4.142 16 N -0.524 5.524 17 Si 0.806 3.194 18 H -0.172 1.172 19 H -0.184 1.184 20 H -0.181 1.181 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.171 4.171 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.661 -3.143 8.143 19.700 hybrid contribution 0.124 -0.285 -0.918 0.969 sum -17.537 -3.428 7.225 19.275 Atomic orbital electron populations 1.20883 0.89175 1.03663 1.03166 1.20135 0.97558 0.92294 0.99918 1.21248 0.93478 0.98682 1.00419 1.21052 0.94944 0.97504 1.00893 1.19939 0.93941 0.94556 1.01098 1.19634 0.90888 0.90333 0.90793 0.90105 1.22269 1.01327 1.03333 0.95018 1.55581 1.46902 1.25463 1.59440 0.99883 0.71105 0.74019 0.72832 1.93307 1.85693 1.52849 1.71863 1.93311 1.59745 1.82580 1.66964 1.30907 1.08641 1.40410 1.37249 0.86574 1.25988 0.92389 0.98457 0.97354 1.69989 1.04998 1.40740 1.36719 0.85130 0.80287 0.76861 0.77083 1.17176 1.18390 1.18057 1.21100 0.94443 0.97480 1.01262 1.20045 0.93080 0.96455 0.99812 1.20901 1.00272 0.92692 1.03221 0.90079 0.90920 0.90259 0.84051 0.85737 0.91134 0.89676 0.93000 0.75352 0.89091 0.85418 0.89958 0.91574 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.60 71.23 0.68 -0.88 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.12 -2.74 9.70 22.27 0.22 -2.52 16 4 C -0.13 -3.40 9.16 22.27 0.20 -3.20 16 5 C -0.09 -2.83 4.95 -19.87 -0.10 -2.93 16 6 C 0.19 6.76 2.98 44.24 0.13 6.89 16 7 H 0.08 3.07 7.71 -2.38 -0.02 3.05 16 8 C -0.16 -5.06 9.50 71.98 0.68 -4.38 16 9 N -1.12 -45.64 5.43 -172.52 -0.94 -46.58 16 10 S 2.72 148.84 4.93 -56.49 -0.28 148.56 16 11 O -1.05 -64.01 18.02 -128.00 -2.31 -66.31 16 12 O -1.04 -61.94 17.28 -128.00 -2.21 -64.16 16 13 C -1.04 -58.10 9.58 67.73 0.65 -57.45 16 14 H 0.12 5.95 7.81 -2.91 -0.02 5.93 16 15 C 0.07 4.00 5.46 84.65 0.46 4.46 16 16 N -0.89 -53.83 13.19 21.44 0.28 -53.54 16 17 Si 0.99 41.79 29.54 68.60 2.03 43.81 16 18 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.12 -3.39 9.32 22.27 0.21 -3.18 16 22 C -0.09 -2.14 5.88 -19.87 -0.12 -2.26 16 23 C -0.11 -1.86 9.61 71.24 0.68 -1.17 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 26 H 0.08 0.94 5.94 -2.39 -0.01 0.93 16 27 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.12 3.15 6.82 -2.91 -0.02 3.13 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.89 7.64 -2.39 -0.02 1.87 16 32 H 0.41 14.75 7.08 -96.74 -0.69 14.07 16 33 H 0.30 16.11 8.31 -92.70 -0.77 15.34 16 34 H 0.13 3.24 8.04 -2.91 -0.02 3.22 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.08 1.09 5.94 -2.38 -0.01 1.08 16 Total: -1.00 -76.76 323.41 0.56 -76.19 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.39 Total: 30.86 kcal Atomic # 6 Polarization: -72.43 SS G_CDS: 3.59 Total: -68.84 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -0.65 Total: -100.12 kcal Atomic # 8 Polarization: -125.95 SS G_CDS: -4.52 Total: -130.47 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 148.84 SS G_CDS: -0.28 Total: 148.56 kcal Total: -76.76 0.56 -76.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.542 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds