Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46891 * 2 1 4 4 H 1.09002 * 109.46994 * 305.00004 * 3 2 1 5 5 C 1.50703 * 109.46914 * 184.99999 * 3 2 1 6 6 H 1.07997 * 120.00091 * 240.00137 * 5 3 2 7 7 C 1.37880 * 120.00003 * 59.99621 * 5 3 2 8 8 N 1.31516 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46766 * 90.00152 * 9 7 5 11 11 H 1.48493 * 109.47276 * 210.00386 * 9 7 5 12 12 H 1.48505 * 109.47172 * 330.00655 * 9 7 5 13 13 N 1.46500 * 109.47338 * 65.00297 * 3 2 1 14 14 C 1.34775 * 119.99645 * 274.99983 * 13 3 2 15 15 O 1.21480 * 120.00295 * 359.97438 * 14 13 3 16 16 C 1.48459 * 120.00001 * 179.97438 * 14 13 3 17 17 N 1.33100 * 120.53984 * 354.59068 * 16 14 13 18 18 C 1.31683 * 120.72002 * 180.02562 * 17 16 14 19 19 Cl 1.73603 * 119.05598 * 179.97438 * 18 17 16 20 20 N 1.32034 * 121.88370 * 359.97213 * 18 17 16 21 21 C 1.32166 * 121.02061 * 0.02562 * 20 18 17 22 22 C 1.38803 * 119.16333 * 359.72390 * 21 20 18 23 23 C 1.50695 * 120.85673 * 180.29657 * 22 21 20 24 24 H 1.08999 * 109.47190 * 60.00265 * 1 2 3 25 25 H 1.09005 * 109.46998 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47190 * 119.99735 * 2 1 3 28 28 H 1.08993 * 109.47120 * 239.99552 * 2 1 3 29 29 H 0.96994 * 120.00184 * 180.02562 * 8 7 5 30 30 H 0.96997 * 120.00300 * 94.99719 * 13 3 2 31 31 H 1.07998 * 120.41948 * 180.02562 * 21 20 18 32 32 H 1.09004 * 109.47417 * 263.80500 * 23 22 21 33 33 H 1.09008 * 109.47200 * 23.80155 * 23 22 21 34 34 H 1.09002 * 109.47500 * 143.80285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7601 11 1 6.3829 0.9223 -2.8172 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3405 2.6326 0.4326 16 6 0.0422 3.3276 2.6357 17 7 0.8389 3.2764 3.7006 18 6 0.4936 3.8630 4.8279 19 17 1.5654 3.7684 6.1903 20 7 -0.6443 4.5211 4.9516 21 6 -1.4891 4.6171 3.9396 22 6 -1.1656 4.0192 2.7295 23 6 -2.0975 4.1105 1.5488 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.8292 -0.0611 -2.9498 30 1 2.2719 2.1232 1.9978 31 1 -2.4170 5.1582 4.0514 32 1 -2.7158 3.2138 1.5036 33 1 -2.7364 4.9871 1.6570 34 1 -1.5148 4.1966 0.6316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193257447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = 1.107273 kcal Electronic energy + Delta-G solvation = -20016.562984 eV Core-core repulsion = 16782.560854 eV Total energy + Delta-G solvation = -3234.002130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39633 -38.99745 -37.01575 -35.37956 -34.23502 -33.43015 -32.37139 -30.95982 -27.93731 -26.97329 -25.55404 -23.27467 -22.80889 -21.10030 -19.54323 -18.53078 -18.07420 -16.52096 -15.84559 -15.45329 -15.30700 -14.64305 -14.50420 -14.35784 -14.16466 -13.39096 -13.12610 -12.73966 -12.37709 -12.22138 -11.77612 -11.61974 -11.55719 -11.30430 -11.28902 -11.01850 -10.98175 -10.83902 -10.38467 -10.24765 -9.98479 -9.67891 -9.31404 -9.11785 -9.03020 -8.55608 -7.95353 -6.16701 -4.25955 0.37770 0.62403 1.27305 2.97396 3.23573 3.30447 3.32579 3.49478 3.76085 3.89161 4.31310 4.32573 4.56798 4.70241 4.88946 5.15305 5.46426 5.69820 5.77587 5.87567 6.32009 6.34917 6.38803 6.50168 6.57868 6.97033 7.09194 7.23031 7.30301 7.49806 7.58696 7.67757 7.81958 8.10122 8.50066 8.66551 8.91923 9.40945 10.88710 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.005086 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.217671 B = 5504.090191 C = 6578.979741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.552 3.448 15 O -0.525 6.525 16 C 0.151 3.849 17 N -0.476 5.476 18 C 0.347 3.653 19 Cl 0.024 6.976 20 N -0.496 5.496 21 C 0.157 3.843 22 C -0.132 4.132 23 C -0.111 4.111 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.265 0.735 30 H 0.401 0.599 31 H 0.183 0.817 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 6.654 11.138 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.322 5.322 14 C 0.334 3.666 15 O -0.403 6.403 16 C 0.003 3.997 17 N -0.195 5.195 18 C 0.054 3.946 19 Cl 0.052 6.948 20 N -0.213 5.213 21 C -0.010 4.010 22 C -0.138 4.138 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.200 0.800 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.304 6.416 11.124 15.292 hybrid contribution 0.919 -0.006 -0.038 0.919 sum -7.385 6.410 11.086 14.783 Atomic orbital electron populations 1.21848 0.98339 0.98289 1.01041 1.21952 0.92616 0.99511 1.02628 1.18960 0.94662 0.89347 0.80360 0.92848 1.21212 0.90447 1.39252 1.06440 0.91884 1.24863 0.98714 0.94670 0.95268 1.69881 1.35201 1.37520 1.09362 0.86436 0.84714 0.78565 0.77360 1.20471 1.21053 1.19804 1.46516 1.13802 1.52815 1.19038 1.17610 0.83953 0.80274 0.84808 1.90731 1.51489 1.59656 1.38382 1.22117 0.90191 0.94197 0.93153 1.67840 1.34005 1.18736 0.98882 1.22827 0.89489 0.93261 0.89062 1.98435 1.61249 1.96542 1.38612 1.67776 1.03058 1.16894 1.33565 1.23263 0.97447 0.93919 0.86360 1.21926 0.96526 0.96688 0.98638 1.20980 0.97705 1.02213 0.95879 0.92952 0.94566 0.95646 0.94796 0.87973 0.92494 0.76492 0.79991 0.89783 0.91721 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.05 11.29 55.43 0.63 -23.43 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.68 -14.08 5.01 -55.68 -0.28 -14.36 16 14 C 0.55 10.63 6.34 -12.05 -0.08 10.55 16 15 O -0.52 -10.74 10.64 5.38 0.06 -10.68 16 16 C 0.15 2.47 6.79 -82.64 -0.56 1.91 16 17 N -0.48 -7.72 9.68 -8.22 -0.08 -7.80 16 18 C 0.35 5.09 8.17 -92.04 -0.75 4.34 16 19 Cl 0.02 0.30 29.27 -51.86 -1.52 -1.22 16 20 N -0.50 -6.60 10.39 -11.64 -0.12 -6.72 16 21 C 0.16 1.74 11.00 -17.20 -0.19 1.55 16 22 C -0.13 -1.74 5.95 -103.95 -0.62 -2.35 16 23 C -0.11 -1.27 8.84 36.00 0.32 -0.95 16 24 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 25 H 0.04 0.75 5.65 -51.93 -0.29 0.45 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.40 7.94 7.94 -40.82 -0.32 7.62 16 31 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.52 8.07 -51.92 -0.42 0.10 16 34 H 0.11 1.50 5.95 -51.93 -0.31 1.20 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -27.99 301.96 -7.73 -35.72 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.69 Total: 5.41 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.26 Total: 3.14 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.15 Total: -52.31 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.06 Total: -10.68 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.99 -7.73 -35.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193257447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.831 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds