Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46891 * 2 1 4 4 H 1.09002 * 109.46994 * 305.00004 * 3 2 1 5 5 C 1.50703 * 109.46914 * 184.99999 * 3 2 1 6 6 H 1.07997 * 120.00091 * 240.00137 * 5 3 2 7 7 C 1.37880 * 120.00003 * 59.99621 * 5 3 2 8 8 N 1.31516 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46766 * 90.00152 * 9 7 5 11 11 H 1.48493 * 109.47276 * 210.00386 * 9 7 5 12 12 H 1.48505 * 109.47172 * 330.00655 * 9 7 5 13 13 N 1.46500 * 109.47338 * 65.00297 * 3 2 1 14 14 C 1.34775 * 119.99645 * 274.99983 * 13 3 2 15 15 O 1.21480 * 120.00295 * 359.97438 * 14 13 3 16 16 C 1.48459 * 120.00001 * 179.97438 * 14 13 3 17 17 N 1.33100 * 120.53984 * 354.59068 * 16 14 13 18 18 C 1.31683 * 120.72002 * 180.02562 * 17 16 14 19 19 Cl 1.73603 * 119.05598 * 179.97438 * 18 17 16 20 20 N 1.32034 * 121.88370 * 359.97213 * 18 17 16 21 21 C 1.32166 * 121.02061 * 0.02562 * 20 18 17 22 22 C 1.38803 * 119.16333 * 359.72390 * 21 20 18 23 23 C 1.50695 * 120.85673 * 180.29657 * 22 21 20 24 24 H 1.08999 * 109.47190 * 60.00265 * 1 2 3 25 25 H 1.09005 * 109.46998 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47190 * 119.99735 * 2 1 3 28 28 H 1.08993 * 109.47120 * 239.99552 * 2 1 3 29 29 H 0.96994 * 120.00184 * 180.02562 * 8 7 5 30 30 H 0.96997 * 120.00300 * 94.99719 * 13 3 2 31 31 H 1.07998 * 120.41948 * 180.02562 * 21 20 18 32 32 H 1.09004 * 109.47417 * 263.80500 * 23 22 21 33 33 H 1.09008 * 109.47200 * 23.80155 * 23 22 21 34 34 H 1.09002 * 109.47500 * 143.80285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7601 11 1 6.3829 0.9223 -2.8172 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3405 2.6326 0.4326 16 6 0.0422 3.3276 2.6357 17 7 0.8389 3.2764 3.7006 18 6 0.4936 3.8630 4.8279 19 17 1.5654 3.7684 6.1903 20 7 -0.6443 4.5211 4.9516 21 6 -1.4891 4.6171 3.9396 22 6 -1.1656 4.0192 2.7295 23 6 -2.0975 4.1105 1.5488 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.8292 -0.0611 -2.9498 30 1 2.2719 2.1232 1.9978 31 1 -2.4170 5.1582 4.0514 32 1 -2.7158 3.2138 1.5036 33 1 -2.7364 4.9871 1.6570 34 1 -1.5148 4.1966 0.6316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193257447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = -16.805300 kcal Electronic energy + Delta-G solvation = -20017.339732 eV Core-core repulsion = 16782.560854 eV Total energy + Delta-G solvation = -3234.778877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.52359 -40.52289 -38.05339 -37.12618 -35.39768 -34.57616 -34.17386 -32.74402 -29.38935 -28.42707 -26.80752 -25.00880 -23.99453 -22.62713 -21.32492 -19.99066 -19.19502 -18.21525 -17.28145 -16.95597 -16.84770 -16.13617 -15.95814 -15.63848 -15.19776 -14.89430 -14.59968 -14.20294 -13.85622 -13.51413 -13.36986 -13.18493 -12.86729 -12.77620 -12.67754 -12.56512 -12.32570 -12.18819 -12.15193 -12.07556 -11.59253 -11.31170 -11.06373 -10.55750 -10.36248 -10.33972 -9.68850 -8.17857 -6.34361 -0.77320 -0.38854 0.23178 1.44230 1.44857 1.54976 1.67540 2.09979 2.42539 2.51680 2.80694 3.11813 3.23759 3.51310 3.59900 3.81527 4.33802 4.49575 4.56185 4.73209 4.82071 4.86511 4.96223 5.04749 5.23457 5.32435 5.41184 5.45766 5.54966 5.58906 5.76285 5.86156 6.13889 6.47111 6.70260 6.82906 7.22707 7.40026 8.87327 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.005086 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.217671 B = 5504.090191 C = 6578.979741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.683 5.683 14 C 0.552 3.448 15 O -0.541 6.541 16 C 0.123 3.877 17 N -0.497 5.497 18 C 0.336 3.664 19 Cl 0.034 6.966 20 N -0.496 5.496 21 C 0.179 3.821 22 C -0.123 4.123 23 C -0.107 4.107 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.266 0.734 30 H 0.405 0.595 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.585 7.721 12.719 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.031 0.969 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.330 5.330 14 C 0.336 3.664 15 O -0.419 6.419 16 C -0.023 4.023 17 N -0.216 5.216 18 C 0.042 3.958 19 Cl 0.062 6.938 20 N -0.213 5.213 21 C 0.011 3.989 22 C -0.129 4.129 23 C -0.164 4.164 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.253 0.747 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.327 7.486 12.721 17.460 hybrid contribution 1.136 -0.263 -0.486 1.264 sum -8.190 7.223 12.235 16.400 Atomic orbital electron populations 1.21679 0.96518 0.99431 1.00420 1.21798 0.94177 0.98781 1.01324 1.18539 0.93835 0.89434 0.80691 0.96899 1.21519 0.91446 1.39309 1.06703 0.91733 1.25660 1.03032 0.94251 0.94913 1.70010 1.36915 1.38082 1.09790 0.85431 0.79441 0.78732 0.77266 1.19775 1.20849 1.19352 1.46292 1.14926 1.53813 1.17990 1.18006 0.82965 0.79522 0.85935 1.90724 1.51716 1.59965 1.39544 1.21653 0.92169 0.96405 0.92058 1.67693 1.34718 1.19756 0.99441 1.23022 0.90271 0.93498 0.88979 1.98434 1.61107 1.96506 1.37740 1.67927 1.02754 1.16439 1.34155 1.24120 0.98188 0.92093 0.84487 1.22194 0.95210 0.95384 1.00099 1.20971 0.97437 1.04280 0.93689 0.94458 0.94165 0.93531 0.94633 0.90495 0.92430 0.76026 0.74672 0.89618 0.87331 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.51 71.98 0.61 -4.68 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.06 2.24 44.25 0.10 14.16 16 4 H 0.01 0.76 7.58 -2.39 -0.02 0.74 16 5 C -0.55 -29.37 8.73 25.60 0.22 -29.14 16 6 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -50.89 11.29 21.45 0.24 -50.65 16 9 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 N -0.68 -29.37 5.01 -448.38 -2.25 -31.62 16 14 C 0.55 21.68 6.34 86.97 0.55 22.23 16 15 O -0.54 -22.71 10.64 -3.65 -0.04 -22.75 16 16 C 0.12 3.94 6.79 41.98 0.29 4.23 16 17 N -0.50 -15.83 9.68 -179.93 -1.74 -17.57 16 18 C 0.34 9.31 8.17 180.85 1.48 10.79 16 19 Cl 0.03 0.83 29.27 -2.72 -0.08 0.75 16 20 N -0.50 -11.69 10.39 -190.75 -1.98 -13.67 16 21 C 0.18 3.23 11.00 84.78 0.93 4.16 16 22 C -0.12 -2.94 5.95 -19.43 -0.12 -3.05 16 23 C -0.11 -2.18 8.84 71.23 0.63 -1.55 16 24 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 25 H 0.04 1.67 5.65 -2.38 -0.01 1.65 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 4.14 5.95 -2.39 -0.01 4.13 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 16.53 7.94 -92.71 -0.74 15.80 16 31 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.11 1.26 8.07 -2.38 -0.02 1.24 16 34 H 0.08 2.09 5.95 -2.39 -0.01 2.08 16 Total: -1.00 -62.56 301.96 1.90 -60.66 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.41 Total: 17.64 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 5.31 Total: 13.02 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -5.73 Total: -113.51 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.75 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -62.56 1.90 -60.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193257447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.855 kcal (2) G-P(sol) polarization free energy of solvation -62.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds