Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 119.99801 * 2 1 4 4 H 1.48503 * 109.47180 * 269.99664 * 3 2 1 5 5 H 1.48503 * 109.47165 * 29.99572 * 3 2 1 6 6 H 1.48503 * 109.47012 * 149.99725 * 3 2 1 7 7 C 1.39929 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99996 * 167.35403 * 7 2 1 9 9 C 1.41408 * 120.00144 * 347.35195 * 7 2 1 10 10 C 1.40792 * 120.20658 * 331.82971 * 9 7 2 11 11 C 1.37651 * 119.89902 * 180.27544 * 10 9 7 12 12 C 1.38514 * 120.32687 * 0.02562 * 11 10 9 13 13 C 1.39313 * 120.41968 * 359.95997 * 12 11 10 14 14 N 1.39699 * 119.95032 * 180.02562 * 13 12 11 15 15 C 1.39981 * 120.00189 * 6.10977 * 14 13 12 16 16 C 1.38871 * 120.05019 * 250.33898 * 15 14 13 17 17 C 1.38172 * 120.05670 * 179.97438 * 16 15 14 18 18 C 1.38256 * 120.19787 * 359.97438 * 17 16 15 19 19 C 1.38680 * 120.17296 * 359.97438 * 18 17 16 20 20 C 1.39059 * 119.87024 * 359.72801 * 19 18 17 21 21 O 1.36606 * 108.67547 * 179.82231 * 20 19 18 22 22 C 1.43993 * 105.51774 * 343.10503 * 21 20 19 23 23 O 1.36513 * 131.46792 * 180.02562 * 19 18 17 24 24 C 1.38336 * 120.09482 * 0.03804 * 13 12 11 25 25 H 0.96998 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.05116 * 0.27449 * 10 9 7 27 27 H 1.08003 * 119.83866 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.78749 * 179.97438 * 12 11 10 29 29 H 0.96998 * 119.99615 * 186.11481 * 14 13 12 30 30 H 1.07999 * 119.96980 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.89932 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.91098 * 179.97438 * 18 17 16 33 33 H 1.09000 * 110.57850 * 268.30308 * 22 21 20 34 34 H 1.09004 * 110.70198 * 145.47559 * 22 21 20 35 35 H 1.08007 * 120.16390 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0683 -1.2232 -0.2042 9 6 1.3267 -2.4215 0.2692 10 6 0.1767 -2.4215 1.0815 11 6 -0.4783 -3.6035 1.3435 12 6 -0.0114 -4.7945 0.8124 13 6 1.1251 -4.8100 0.0067 14 7 1.5871 -6.0167 -0.5243 15 6 0.8397 -7.1880 -0.3543 16 6 1.3005 -8.1907 0.4889 17 6 0.5627 -9.3467 0.6572 18 6 -0.6363 -9.5100 -0.0116 19 6 -1.1053 -8.5140 -0.8549 20 6 -0.3698 -7.3459 -1.0232 21 8 -1.0344 -6.5326 -1.8968 22 6 -1.9833 -7.3822 -2.5684 23 8 -2.2362 -8.4314 -1.6150 24 6 1.7968 -3.6323 -0.2680 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1910 -1.4955 1.4983 27 1 -1.3601 -3.6024 1.9671 28 1 -0.5318 -5.7168 1.0240 29 1 2.4259 -6.0429 -1.0108 30 1 2.2364 -8.0667 1.0134 31 1 0.9236 -10.1250 1.3132 32 1 -1.2091 -10.4156 0.1231 33 1 -1.5521 -7.7906 -3.4824 34 1 -2.9004 -6.8363 -2.7894 35 1 2.6777 -3.6429 -0.8928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210562003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -5.726562 kcal Electronic energy + Delta-G solvation = -21229.190603 eV Core-core repulsion = 17965.032235 eV Total energy + Delta-G solvation = -3264.158369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00026 -38.57687 -37.23252 -36.12279 -34.68675 -33.03809 -29.89970 -29.87466 -29.48703 -26.95798 -25.69043 -25.16390 -22.77221 -22.43290 -20.80878 -20.26741 -17.97662 -17.80777 -17.36008 -16.99969 -16.33159 -15.44866 -15.39995 -14.73935 -14.53733 -14.34555 -13.92772 -13.75572 -13.05877 -12.80492 -12.76131 -12.53046 -12.33176 -12.10899 -11.64284 -11.47394 -11.29591 -11.05748 -10.83172 -10.67538 -10.44698 -9.83507 -9.42263 -9.32311 -9.02119 -8.42247 -7.95036 -7.35665 -6.66137 -6.33463 -4.31031 1.24849 1.28757 2.87096 2.89252 3.11192 3.15783 3.19089 3.32765 3.58947 3.66479 3.95916 4.02539 4.71995 4.74019 4.80112 4.93617 5.11457 5.25929 5.32798 5.50243 5.80867 5.85405 6.14915 6.30288 6.37610 6.41936 6.51549 6.54602 7.01056 7.01297 7.13374 7.22852 7.31962 7.37879 7.78679 7.89447 8.14109 8.22790 8.46429 8.53605 8.77013 8.99993 9.09178 10.30789 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.004114 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.611888 B = 6803.958036 C = 7175.633147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.187 4.187 11 C -0.079 4.079 12 C -0.277 4.277 13 C 0.214 3.786 14 N -0.711 5.711 15 C 0.196 3.804 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.117 4.117 19 C 0.033 3.967 20 C 0.030 3.970 21 O -0.289 6.289 22 C 0.210 3.790 23 O -0.313 6.313 24 C -0.274 4.274 25 H 0.278 0.722 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.400 0.600 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 -14.475 -1.947 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.207 4.207 11 C -0.098 4.098 12 C -0.300 4.300 13 C 0.119 3.881 14 N -0.341 5.341 15 C 0.100 3.900 16 C -0.145 4.145 17 C -0.123 4.123 18 C -0.136 4.136 19 C -0.012 4.012 20 C -0.017 4.017 21 O -0.204 6.204 22 C 0.098 3.902 23 O -0.229 6.229 24 C -0.297 4.297 25 H 0.089 0.911 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.236 0.764 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.120 -14.212 -1.959 14.390 hybrid contribution 0.333 0.845 -0.524 1.049 sum -0.788 -13.367 -2.483 13.618 Atomic orbital electron populations 1.69832 1.07431 1.28845 1.36406 1.25868 0.94754 1.01082 0.92406 0.86328 0.80515 0.80828 0.79072 1.19636 1.20201 1.18581 1.19516 0.96264 0.90642 1.43151 0.90668 1.17332 0.90714 0.91244 0.87138 1.21239 0.99796 0.96451 1.03195 1.20450 0.97794 0.92903 0.98634 1.19876 1.01776 0.97017 1.11334 1.17435 0.93995 0.83599 0.93098 1.41857 1.25158 1.03945 1.63167 1.16600 0.88601 0.88977 0.95819 1.21226 1.01881 0.93788 0.97612 1.20733 0.93962 0.97848 0.99736 1.19990 0.97192 0.97629 0.98744 1.19745 0.86620 0.95940 0.98908 1.20322 0.95814 0.88789 0.96788 1.87572 1.49078 1.31838 1.51913 1.25612 0.93596 0.80714 0.90283 1.87325 1.34086 1.55468 1.46040 1.20455 1.05859 0.91646 1.11755 0.91105 0.86538 0.89532 0.89920 0.76351 0.84444 0.84538 0.85086 0.90349 0.85434 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.31 10.90 55.55 0.61 -20.71 16 2 C 0.08 1.95 5.22 -17.35 -0.09 1.86 16 3 Si 0.91 19.07 29.58 -169.99 -5.03 14.04 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.64 9.06 -37.74 -0.34 -12.98 16 8 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 9 C 0.14 3.81 5.55 -106.85 -0.59 3.22 16 10 C -0.19 -5.05 8.67 -38.83 -0.34 -5.39 16 11 C -0.08 -1.97 10.01 -39.69 -0.40 -2.37 16 12 C -0.28 -6.68 9.08 -39.08 -0.35 -7.04 16 13 C 0.21 4.97 6.55 -83.84 -0.55 4.42 16 14 N -0.71 -13.38 5.42 -8.36 -0.05 -13.42 16 15 C 0.20 3.33 4.78 -83.57 -0.40 2.93 16 16 C -0.12 -1.70 9.96 -39.37 -0.39 -2.09 16 17 C -0.10 -1.18 10.03 -39.60 -0.40 -1.58 16 18 C -0.12 -1.44 10.06 -39.41 -0.40 -1.84 16 19 C 0.03 0.50 7.14 -39.11 -0.28 0.22 16 20 C 0.03 0.52 6.09 -38.95 -0.24 0.29 16 21 O -0.29 -5.31 11.41 -46.04 -0.53 -5.84 16 22 C 0.21 2.77 8.90 101.05 0.90 3.67 16 23 O -0.31 -4.61 11.40 -45.73 -0.52 -5.13 16 24 C -0.27 -6.89 9.64 -38.67 -0.37 -7.26 16 25 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 26 H 0.12 3.25 6.23 -52.48 -0.33 2.92 16 27 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 28 H 0.08 1.92 6.55 -52.49 -0.34 1.58 16 29 H 0.40 6.60 8.84 -40.82 -0.36 6.24 16 30 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -31.23 305.13 -8.69 -39.93 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.54 Total: 10.49 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -4.24 Total: -23.95 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.56 Total: -34.13 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.05 Total: -10.97 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.23 -8.69 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210562003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.200 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds