Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31770 * 119.07779 * 2 1 4 4 C 1.32503 * 120.97159 * 179.76187 * 3 2 1 5 5 C 1.38325 * 119.15727 * 0.50330 * 4 3 2 6 6 Cl 1.73606 * 120.83621 * 179.77633 * 5 4 3 7 7 C 1.39485 * 118.33129 * 359.75423 * 5 4 3 8 8 O 1.35544 * 120.51819 * 179.97438 * 7 5 4 9 9 C 1.42892 * 116.99812 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.64673 * 31.68333 * 9 8 7 11 11 C 1.55156 * 110.72004 * 155.02399 * 9 8 7 12 12 C 1.54911 * 101.58473 * 153.86618 * 11 9 8 13 13 N 1.47427 * 104.82583 * 322.98552 * 12 11 9 14 14 C 1.36941 * 125.64537 * 204.09231 * 13 12 11 15 15 H 1.08008 * 119.99763 * 180.02562 * 14 13 12 16 16 C 1.38809 * 120.00073 * 0.04649 * 14 13 12 17 17 N 1.31617 * 120.00065 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47064 * 119.99957 * 18 16 14 21 21 H 1.48503 * 109.46723 * 239.99817 * 18 16 14 22 22 C 1.47020 * 108.70696 * 24.13089 * 13 12 11 23 23 N 1.31782 * 119.07818 * 180.27523 * 2 1 3 24 24 H 1.09002 * 109.47152 * 269.72787 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72887 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72868 * 1 2 3 27 27 H 1.07991 * 120.42481 * 180.24003 * 4 3 2 28 28 H 1.09006 * 111.00283 * 271.93120 * 11 9 8 29 29 H 1.08994 * 111.00914 * 35.78193 * 11 9 8 30 30 H 1.08996 * 110.36754 * 204.15402 * 12 11 9 31 31 H 1.09000 * 110.46188 * 81.87019 * 12 11 9 32 32 H 0.96996 * 119.99699 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.88631 * 239.52304 * 22 13 12 34 34 H 1.08997 * 110.01248 * 118.42553 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1516 0.0000 4 6 3.4717 1.1954 0.0047 5 6 4.1852 0.0104 -0.0009 6 17 5.9213 0.0169 -0.0009 7 6 3.4749 -1.1900 -0.0061 8 8 4.1292 -2.3770 -0.0123 9 6 3.3273 -3.5597 -0.0179 10 1 2.3931 -3.3881 -0.5525 11 6 4.1079 -4.7492 -0.6369 12 6 3.4216 -5.9597 0.0439 13 7 3.1347 -5.5073 1.4174 14 6 2.9716 -6.3199 2.5076 15 1 2.7628 -5.8891 3.4758 16 6 3.0750 -7.6971 2.3684 17 7 3.3304 -8.2220 1.1887 18 14 2.8532 -8.8054 3.8557 19 1 2.5786 -7.9747 5.0555 20 1 1.7134 -9.7277 3.6201 21 1 4.0919 -9.5949 4.0737 22 6 3.0519 -4.0394 1.4228 23 7 2.1475 -1.1517 -0.0055 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5096 27 1 3.9875 2.1442 0.0086 28 1 3.9759 -4.7828 -1.7184 29 1 5.1650 -4.7014 -0.3753 30 1 4.0938 -6.8175 0.0597 31 1 2.4961 -6.2133 -0.4730 32 1 3.4023 -9.1843 1.0914 33 1 3.8006 -3.6283 2.0999 34 1 2.0566 -3.7231 1.7348 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228290462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = 35.995028 kcal Electronic energy + Delta-G solvation = -19850.462644 eV Core-core repulsion = 16617.973360 eV Total energy + Delta-G solvation = -3232.489283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39583 -38.98407 -36.82646 -36.41716 -33.58181 -32.81337 -32.02704 -29.37538 -28.57467 -27.36286 -25.04081 -23.99491 -22.97306 -20.62456 -20.30694 -18.29586 -18.06601 -16.94226 -16.29080 -16.06388 -15.23893 -14.86472 -14.57719 -14.33023 -13.79539 -13.51272 -13.09078 -12.87907 -12.55120 -12.51848 -11.94750 -11.92247 -11.67308 -11.41467 -11.26747 -11.04464 -10.88892 -10.83272 -10.51890 -10.15474 -9.97276 -9.87665 -9.64438 -9.46602 -8.83781 -8.71075 -6.91136 -5.71053 -3.13200 0.56655 0.94423 1.89588 2.80446 3.37920 3.43397 3.45492 3.46063 3.72757 3.84415 4.43208 4.52882 4.75092 5.00844 5.22165 5.29903 5.38420 5.41365 5.46030 5.60736 5.66627 5.72221 6.01207 6.20743 6.36333 6.44123 6.50478 6.58720 6.68660 7.27057 7.40283 7.56806 7.76805 7.85512 8.28075 9.15662 9.75830 10.38892 11.33568 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.004316 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.796586 B = 6486.276725 C = 7061.343227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.360 3.640 3 N -0.537 5.537 4 C 0.190 3.810 5 C -0.182 4.182 6 Cl -0.032 7.032 7 C 0.390 3.610 8 O -0.275 6.275 9 C 0.073 3.927 10 H 0.095 0.905 11 C -0.137 4.137 12 C 0.154 3.846 13 N -0.600 5.600 14 C -0.222 4.222 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.923 5.923 18 Si 0.917 3.083 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.126 3.874 23 N -0.556 5.556 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.180 0.820 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.018 0.982 32 H 0.253 0.747 33 H 0.030 0.970 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 17.799 -5.146 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.093 3.907 3 N -0.257 5.257 4 C 0.026 3.974 5 C -0.215 4.215 6 Cl -0.004 7.004 7 C 0.202 3.798 8 O -0.176 6.176 9 C 0.017 3.983 10 H 0.113 0.887 11 C -0.176 4.176 12 C 0.029 3.971 13 N -0.328 5.328 14 C -0.350 4.350 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.747 3.253 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.000 4.000 23 N -0.288 5.288 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.197 0.803 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.182 17.415 -5.089 18.182 hybrid contribution 0.834 -0.632 0.770 1.300 sum -0.347 16.782 -4.319 17.333 Atomic orbital electron populations 1.20643 0.84988 1.04496 1.04416 1.23138 0.98241 0.82192 0.87099 1.68405 1.08479 1.29714 1.19123 1.23068 0.89174 0.96665 0.88486 1.21825 0.88267 0.94079 1.17287 1.98381 1.06171 1.98741 1.97093 1.19972 0.87242 0.86964 0.85612 1.86424 1.35258 1.11760 1.84171 1.23837 0.94706 0.80482 0.99293 0.88688 1.23275 1.00628 0.94451 0.99264 1.21997 0.98141 0.94078 0.82853 1.44370 1.83898 0.98735 1.05753 1.19129 1.41112 0.87536 0.87273 0.90330 1.24790 1.02044 0.96480 0.97202 1.69756 1.55781 1.10597 1.21035 0.85963 0.77375 0.80535 0.81416 1.20493 1.21650 1.21642 1.21555 0.98461 0.87240 0.92765 1.68170 1.07160 1.31691 1.21778 0.89035 0.89171 0.89249 0.80283 0.91415 0.90733 0.86763 0.96391 0.93626 0.95245 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.32 36.01 0.37 -0.43 16 2 C 0.36 4.66 7.64 -157.22 -1.20 3.46 16 3 N -0.54 -6.62 10.33 -10.77 -0.11 -6.73 16 4 C 0.19 2.13 11.11 -17.23 -0.19 1.94 16 5 C -0.18 -2.43 6.38 -39.08 -0.25 -2.68 16 6 Cl -0.03 -0.40 28.65 -51.86 -1.49 -1.89 16 7 C 0.39 6.21 7.52 -16.67 -0.13 6.08 16 8 O -0.27 -4.87 9.41 -18.33 -0.17 -5.05 16 9 C 0.07 1.38 3.16 -24.89 -0.08 1.30 16 10 H 0.10 1.76 7.16 -51.93 -0.37 1.39 16 11 C -0.14 -2.68 6.81 -24.58 -0.17 -2.85 16 12 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 13 N -0.60 -15.65 3.39 -170.07 -0.58 -16.22 16 14 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 15 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 18 Si 0.92 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.13 2.80 7.02 -3.06 -0.02 2.78 16 23 N -0.56 -8.58 8.77 -10.76 -0.09 -8.67 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.11 3.08 5.87 -51.93 -0.30 2.78 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -30.74 305.40 -8.25 -39.00 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.02 Total: -2.48 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.93 Total: 6.54 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.22 Total: -57.73 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.17 Total: -5.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.49 Total: -1.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.74 -8.25 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228290462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.990 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds