Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38642 * 121.03818 * 2 1 4 4 C 1.38854 * 118.01096 * 180.26604 * 3 2 1 5 5 Cl 1.73609 * 120.02970 * 179.71136 * 4 3 2 6 6 N 1.31923 * 119.94539 * 359.72810 * 4 3 2 7 7 N 1.28351 * 122.24181 * 0.02562 * 6 4 3 8 8 C 1.32319 * 122.11625 * 359.97438 * 7 6 4 9 9 O 1.35715 * 120.12517 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00021 * 0.02562 * 9 8 7 11 11 C 1.53507 * 114.17322 * 149.99592 * 10 9 8 12 12 N 1.47489 * 87.92897 * 87.62477 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 H 1.08995 * 109.47287 * 270.26968 * 1 2 3 24 24 H 1.09011 * 109.46815 * 30.26497 * 1 2 3 25 25 H 1.08994 * 109.47366 * 150.26286 * 1 2 3 26 26 H 1.08000 * 120.99230 * 359.97438 * 3 2 1 27 27 H 1.08999 * 113.25104 * 17.04736 * 10 9 8 28 28 H 1.08997 * 113.47543 * 332.86286 * 11 10 9 29 29 H 1.08997 * 113.47777 * 202.38362 * 11 10 9 30 30 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 31 31 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 32 32 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 33 33 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 34 34 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2219 1.1879 0.0000 4 6 3.6085 1.1146 -0.0057 5 17 4.5554 2.5697 -0.0135 6 7 4.2057 -0.0617 -0.0055 7 7 3.5477 -1.1637 -0.0006 8 6 2.2249 -1.1932 0.0051 9 8 1.5701 -2.3819 0.0106 10 6 2.3723 -3.5645 0.0106 11 6 1.7242 -4.7637 0.7165 12 7 1.0833 -5.1048 -0.5673 13 6 1.1152 -6.5545 -0.8029 14 6 0.2459 -6.8901 -1.9872 15 1 -0.2776 -6.1050 -2.5126 16 6 0.1197 -8.1994 -2.4007 17 7 -0.6386 -8.4923 -3.4346 18 14 1.0257 -9.5571 -1.4924 19 1 2.3646 -9.7538 -2.1039 20 1 1.1841 -9.1779 -0.0654 21 1 0.2486 -10.8192 -1.5859 22 6 2.2095 -4.4345 -1.2436 23 1 -0.3633 0.0048 1.0276 24 1 -0.3633 0.8877 -0.5180 25 1 -0.3634 -0.8923 -0.5097 26 1 1.7153 2.1418 -0.0004 27 1 3.4073 -3.3823 0.2998 28 1 1.0151 -4.4788 1.4936 29 1 2.4437 -5.5096 1.0542 30 1 0.7431 -7.0744 0.0799 31 1 2.1398 -6.8674 -1.0039 32 1 -0.7271 -9.4134 -3.7256 33 1 3.0584 -5.0925 -1.4289 34 1 1.9116 -3.8706 -2.1276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229166330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = 63.350122 kcal Electronic energy + Delta-G solvation = -19334.535274 eV Core-core repulsion = 16103.232196 eV Total energy + Delta-G solvation = -3231.303078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62143 -39.95113 -37.63321 -36.97232 -34.77837 -32.84071 -31.73771 -29.83941 -28.56223 -26.00652 -25.60340 -24.42885 -23.31572 -21.44330 -20.29108 -18.27691 -17.98006 -16.83272 -16.82513 -16.34475 -15.41645 -15.13348 -14.64320 -14.45430 -13.87005 -13.62382 -13.53660 -13.47962 -13.08376 -12.74188 -12.47901 -12.40141 -12.02873 -11.91291 -11.63525 -11.44000 -11.20155 -10.65105 -10.37068 -10.25581 -10.10262 -9.89686 -9.84158 -9.40046 -9.02496 -8.61636 -8.07674 -6.08440 -4.06289 0.32737 0.54439 1.31601 2.62174 3.07741 3.24231 3.32397 3.32721 3.76259 3.98104 4.29882 4.36543 4.37813 4.55778 4.64418 4.74244 5.11741 5.16611 5.22170 5.31172 5.36292 5.57816 5.65640 5.68929 5.84773 5.90970 6.00675 6.12788 6.35952 6.62101 7.00736 7.23601 7.62026 7.75290 8.23236 8.58572 9.02152 9.52259 11.04933 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038657 B = 0.003170 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.140874 B = 8832.063686 C = 9102.494430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 C -0.083 4.083 4 C 0.079 3.921 5 Cl -0.012 7.012 6 N -0.197 5.197 7 N -0.280 5.280 8 C 0.276 3.724 9 O -0.251 6.251 10 C 0.045 3.955 11 C -0.005 4.005 12 N -0.446 5.446 13 C 0.125 3.875 14 C -0.507 4.507 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.284 1.284 22 C 0.001 3.999 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.164 0.836 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.030 0.970 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.082 0.918 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 20.958 9.438 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.111 4.111 4 C -0.094 4.094 5 Cl 0.016 6.984 6 N -0.043 5.043 7 N -0.137 5.137 8 C 0.090 3.910 9 O -0.153 6.153 10 C -0.012 4.012 11 C -0.134 4.134 12 N -0.169 5.169 13 C -0.002 4.002 14 C -0.545 4.545 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.210 1.210 22 C -0.129 4.129 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.182 0.818 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.160 20.081 9.171 23.208 hybrid contribution 0.264 -0.402 0.455 0.662 sum 7.424 19.679 9.626 23.131 Atomic orbital electron populations 1.20772 0.87386 1.04778 1.03834 1.20448 0.99280 0.89560 1.00154 1.21980 0.91966 0.99813 0.97324 1.23249 0.90492 0.90990 1.04701 1.98412 1.73054 1.30235 1.96687 1.72646 1.30553 0.93444 1.07623 1.73148 1.05464 1.18111 1.16946 1.21541 0.90148 0.88159 0.91183 1.86389 1.33147 1.10660 1.85127 1.23794 0.95181 0.82066 1.00193 1.24123 0.98347 0.93934 0.96995 1.69065 1.33296 1.13381 1.01158 1.20774 0.96116 0.84865 0.98481 1.20938 1.27744 0.94115 1.11749 0.90161 1.24933 0.95164 0.98445 0.94878 1.69894 1.39020 1.19236 1.25659 0.86861 0.80095 0.82024 0.80768 1.20237 1.19242 1.21026 1.24210 0.95167 0.96196 0.97280 0.89690 0.90337 0.89032 0.81809 0.87405 0.89425 0.90154 0.95246 0.98459 0.92604 0.90032 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.86 36.01 0.36 -0.55 16 2 C -0.08 -0.86 5.94 -104.10 -0.62 -1.48 16 3 C -0.08 -0.73 9.71 -39.20 -0.38 -1.11 16 4 C 0.08 0.87 7.36 -17.28 -0.13 0.74 16 5 Cl -0.01 -0.11 29.13 -51.86 -1.51 -1.62 16 6 N -0.20 -2.71 11.48 32.89 0.38 -2.33 16 7 N -0.28 -4.07 9.78 30.50 0.30 -3.77 16 8 C 0.28 3.74 7.55 -16.96 -0.13 3.61 16 9 O -0.25 -3.79 9.35 -18.85 -0.18 -3.97 16 10 C 0.04 0.68 4.54 -26.20 -0.12 0.56 16 11 C 0.00 -0.07 7.52 -7.54 -0.06 -0.13 16 12 N -0.45 -9.32 6.32 -246.10 -1.55 -10.87 16 13 C 0.12 2.99 3.64 -4.98 -0.02 2.97 16 14 C -0.51 -14.59 9.94 -34.44 -0.34 -14.93 16 15 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.00 0.02 7.55 -7.54 -0.06 -0.04 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.45 8.11 -51.92 -0.42 0.03 16 25 H 0.09 0.92 7.63 -51.93 -0.40 0.52 16 26 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.11 1.52 6.89 -51.93 -0.36 1.17 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 30 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 31 H 0.00 -0.05 6.73 -51.93 -0.35 -0.40 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 308.01 15.07 4.64 4.64 Total: -1.00 -32.30 308.01 -7.38 -39.68 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.97 Total: -2.98 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.59 Total: -8.50 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.11 Total: -43.89 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.18 Total: -3.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.30 -7.38 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229166330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.030 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds