Wall clock time and date at job start Tue Mar 31 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38633 * 121.03546 * 2 1 4 4 C 1.38861 * 118.01457 * 180.26616 * 3 2 1 5 5 Cl 1.73598 * 120.03459 * 179.70672 * 4 3 2 6 6 N 1.31934 * 119.94098 * 359.72696 * 4 3 2 7 7 N 1.28354 * 122.23706 * 0.02562 * 6 4 3 8 8 C 1.32321 * 122.11929 * 359.97438 * 7 6 4 9 9 O 1.35714 * 120.12212 * 180.02562 * 8 7 6 10 10 C 1.42900 * 117.00206 * 0.02562 * 9 8 7 11 11 H 1.09008 * 110.88137 * 32.42874 * 10 9 8 12 12 C 1.55154 * 111.03913 * 156.32977 * 10 9 8 13 13 C 1.54325 * 102.94303 * 153.59305 * 12 10 9 14 14 N 1.47290 * 107.30599 * 337.81911 * 13 12 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 12 16 16 H 1.08005 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00146 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47294 * 89.99594 * 19 17 15 21 21 H 1.48503 * 109.46797 * 209.99511 * 19 17 15 22 22 H 1.48500 * 109.47035 * 329.99310 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 12 24 24 H 1.09001 * 109.46965 * 270.26170 * 1 2 3 25 25 H 1.08998 * 109.47076 * 30.26862 * 1 2 3 26 26 H 1.09009 * 109.47118 * 150.26542 * 1 2 3 27 27 H 1.08007 * 120.99454 * 359.97438 * 3 2 1 28 28 H 1.09002 * 110.72290 * 271.95991 * 12 10 9 29 29 H 1.08994 * 110.71922 * 35.05460 * 12 10 9 30 30 H 1.09004 * 109.88239 * 97.22707 * 13 12 10 31 31 H 1.08995 * 109.88239 * 218.23629 * 13 12 10 32 32 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 33 33 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 34 34 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2218 1.1879 0.0000 4 6 3.6084 1.1147 -0.0057 5 17 4.5553 2.5697 -0.0137 6 7 4.2058 -0.0617 -0.0054 7 7 3.5477 -1.1637 -0.0005 8 6 2.2249 -1.1932 0.0051 9 8 1.5701 -2.3819 0.0107 10 6 2.3724 -3.5645 0.0107 11 1 3.3040 -3.4020 0.5529 12 6 1.5898 -4.7685 0.5982 13 6 2.2625 -5.9814 -0.0785 14 7 2.9104 -5.4936 -1.3080 15 6 3.6351 -6.2534 -2.1870 16 1 4.0716 -5.7968 -3.0631 17 6 3.8087 -7.6104 -1.9521 18 7 3.2772 -8.1668 -0.8842 19 14 4.7979 -8.6467 -3.1508 20 1 6.2260 -8.6467 -2.7439 21 1 4.2815 -10.0391 -3.1446 22 1 4.6724 -8.0784 -4.5170 23 6 2.6483 -4.0483 -1.4348 24 1 -0.3633 0.0047 1.0277 25 1 -0.3633 0.8876 -0.5180 26 1 -0.3634 -0.8924 -0.5097 27 1 1.7152 2.1418 -0.0004 28 1 1.7095 -4.8152 1.6806 29 1 0.5348 -4.7103 0.3306 30 1 3.0100 -6.4107 0.5886 31 1 1.5115 -6.7318 -0.3254 32 1 3.3988 -9.1149 -0.7198 33 1 1.7766 -3.8748 -2.0658 34 1 3.5203 -3.5393 -1.8453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229168476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:34 Heat of formation + Delta-G solvation = 43.210972 kcal Electronic energy + Delta-G solvation = -19729.212542 eV Core-core repulsion = 16497.036166 eV Total energy + Delta-G solvation = -3232.176377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45190 -38.91088 -37.03976 -36.40309 -34.67952 -32.42426 -31.49260 -29.31180 -28.48923 -27.46545 -25.01711 -23.96930 -23.20763 -20.73944 -20.19645 -18.46358 -18.04335 -16.91090 -16.72549 -16.10939 -14.96989 -14.68549 -14.31662 -14.29885 -13.82336 -13.49004 -13.46880 -12.99998 -12.75447 -12.42355 -12.23771 -11.96186 -11.79623 -11.65604 -11.51285 -10.96984 -10.81794 -10.41164 -10.38231 -10.17565 -10.09599 -9.99511 -9.74219 -9.66307 -8.89401 -8.63307 -6.89191 -5.74270 -3.08428 0.44890 0.68468 1.43645 2.86155 3.22685 3.41182 3.46043 3.47841 3.92929 4.10707 4.42050 4.46949 4.51300 4.81497 5.14628 5.24144 5.29733 5.37601 5.42364 5.53699 5.62233 5.67017 5.69368 5.86320 6.13096 6.32681 6.38830 6.54119 6.60074 7.25023 7.49721 7.51736 7.77249 8.19948 8.40579 9.17589 9.77308 10.41539 11.37996 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.003846 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.691615 B = 7278.759471 C = 8030.659755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.090 4.090 3 C -0.083 4.083 4 C 0.076 3.924 5 Cl -0.014 7.014 6 N -0.194 5.194 7 N -0.270 5.270 8 C 0.278 3.722 9 O -0.282 6.282 10 C 0.066 3.934 11 H 0.098 0.902 12 C -0.136 4.136 13 C 0.179 3.821 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.125 3.875 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.253 0.747 33 H 0.025 0.975 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 20.024 4.229 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.097 4.097 5 Cl 0.014 6.986 6 N -0.040 5.040 7 N -0.127 5.127 8 C 0.092 3.908 9 O -0.184 6.184 10 C 0.010 3.990 11 H 0.116 0.884 12 C -0.175 4.175 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.002 4.002 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.180 0.820 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.850 18.913 4.200 19.972 hybrid contribution -0.428 0.312 -0.579 0.785 sum -5.278 19.225 3.621 20.262 Atomic orbital electron populations 1.20717 0.87716 1.04336 1.03621 1.20418 0.99040 0.89758 1.00967 1.21938 0.92001 0.99678 0.97555 1.23266 0.90427 0.91026 1.04994 1.98404 1.73146 1.30357 1.96727 1.72724 1.30650 0.93416 1.07182 1.73317 1.05452 1.17731 1.16237 1.21511 0.90147 0.88084 0.91040 1.86286 1.35041 1.11602 1.85485 1.24050 0.94538 0.80261 1.00164 0.88430 1.23089 0.99986 0.94390 0.99990 1.21243 0.95686 0.90435 0.87195 1.44364 1.61312 1.01811 1.25332 1.19068 1.24900 0.89910 1.01780 0.90257 1.24806 1.00702 0.96641 0.98131 1.69930 1.48649 1.11219 1.27258 0.86074 0.79639 0.79619 0.80170 1.21469 1.21620 1.20641 1.21816 0.98517 0.87328 0.92523 0.89853 0.90470 0.89522 0.81992 0.91261 0.91140 0.92919 0.93094 0.93633 0.95704 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.86 36.01 0.36 -0.49 16 2 C -0.09 -1.00 5.94 -104.10 -0.62 -1.62 16 3 C -0.08 -0.82 9.71 -39.21 -0.38 -1.20 16 4 C 0.08 0.94 7.36 -17.28 -0.13 0.82 16 5 Cl -0.01 -0.15 29.13 -51.86 -1.51 -1.66 16 6 N -0.19 -3.08 11.48 32.89 0.38 -2.70 16 7 N -0.27 -4.62 9.92 30.50 0.30 -4.32 16 8 C 0.28 4.20 7.55 -16.97 -0.13 4.07 16 9 O -0.28 -4.58 9.11 -18.85 -0.17 -4.75 16 10 C 0.07 1.25 3.23 -24.58 -0.08 1.17 16 11 H 0.10 1.92 7.19 -51.92 -0.37 1.54 16 12 C -0.14 -2.55 6.69 -24.90 -0.17 -2.72 16 13 C 0.18 4.32 5.38 -2.92 -0.02 4.31 16 14 N -0.60 -15.67 3.40 -169.86 -0.58 -16.25 16 15 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 16 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.03 10.33 55.49 0.57 -26.46 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.13 2.74 6.96 -2.53 -0.02 2.72 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 26 H 0.09 0.78 7.63 -51.92 -0.40 0.39 16 27 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.39 7.39 -51.93 -0.38 1.01 16 31 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -31.30 305.46 -6.90 -38.20 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.05 Total: -4.06 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.43 Total: 0.14 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.68 Total: -49.73 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.17 Total: -4.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.30 -6.90 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229168476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.415 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds