Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48492 * 109.47345 * 270.02000 * 3 2 1 5 5 H 1.48508 * 109.46936 * 30.02013 * 3 2 1 6 6 H 1.48502 * 109.47075 * 150.01683 * 3 2 1 7 7 C 1.39936 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00129 * 345.93725 * 7 2 1 9 9 C 1.41157 * 119.99680 * 165.94296 * 7 2 1 10 10 C 1.40716 * 120.29063 * 328.40192 * 9 7 2 11 11 C 1.36492 * 119.92968 * 180.02562 * 10 9 7 12 12 C 1.38821 * 120.53517 * 0.02562 * 11 10 9 13 13 C 1.38301 * 120.59647 * 0.02562 * 12 11 10 14 14 C 1.38451 * 120.04645 * 359.97438 * 13 12 11 15 15 O 1.35647 * 120.26188 * 180.27700 * 14 13 12 16 16 C 1.42900 * 117.00104 * 354.89198 * 15 14 13 17 17 H 1.08998 * 110.83088 * 328.48267 * 16 15 14 18 18 C 1.54775 * 110.94001 * 92.23813 * 16 15 14 19 19 O 1.43825 * 102.84320 * 143.23763 * 18 16 15 20 20 C 1.35954 * 109.27738 * 332.47341 * 19 18 16 21 21 C 1.39169 * 130.77789 * 198.27072 * 20 19 18 22 22 N 1.31703 * 120.77076 * 180.97691 * 21 20 19 23 23 C 1.31878 * 122.22660 * 359.97438 * 22 21 20 24 24 C 1.38449 * 120.51324 * 359.79854 * 23 22 21 25 25 C 1.37855 * 118.91514 * 0.03299 * 24 23 22 26 26 H 0.97002 * 119.99621 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.03847 * 0.04724 * 10 9 7 28 28 H 1.08001 * 119.73279 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.70480 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.98043 * 180.02562 * 13 12 11 31 31 H 1.08996 * 110.73388 * 261.57849 * 18 16 15 32 32 H 1.08999 * 110.73524 * 24.89578 * 18 16 15 33 33 H 1.07999 * 119.61858 * 0.98840 * 21 20 19 34 34 H 1.07997 * 119.74377 * 179.82131 * 23 22 21 35 35 H 1.07999 * 120.54418 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4898 2.0467 -1.4000 5 1 1.4403 2.6526 0.7005 6 1 3.5405 1.4400 0.6997 7 6 2.0083 -1.2119 -0.0005 8 1 1.4925 -2.1333 0.2263 9 6 3.3882 -1.2301 -0.2975 10 6 3.9346 -0.2890 -1.1896 11 6 5.2698 -0.3136 -1.4719 12 6 6.0973 -1.2618 -0.8858 13 6 5.5833 -2.1976 -0.0067 14 6 4.2325 -2.1949 0.2970 15 8 3.7247 -3.1072 1.1629 16 6 4.6178 -4.1150 1.6412 17 1 5.3669 -4.3583 0.8877 18 6 5.2867 -3.6776 2.9665 19 8 5.3632 -4.9080 3.7074 20 6 4.3621 -5.7360 3.3068 21 6 3.8088 -6.8562 3.9200 22 7 2.8416 -7.5344 3.3377 23 6 2.3531 -7.1932 2.1611 24 6 2.8469 -6.0884 1.4885 25 6 3.8575 -5.3517 2.0685 26 1 -0.4850 0.8401 0.0004 27 1 3.2984 0.4522 -1.6502 28 1 5.6858 0.4099 -2.1574 29 1 7.1518 -1.2693 -1.1190 30 1 6.2361 -2.9305 0.4439 31 1 6.2829 -3.2757 2.7817 32 1 4.6668 -2.9497 3.4899 33 1 4.1767 -7.1729 4.8847 34 1 1.5616 -7.7800 1.7191 35 1 2.4470 -5.8084 0.5252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230279232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = 2.042107 kcal Electronic energy + Delta-G solvation = -21456.704287 eV Core-core repulsion = 18192.882793 eV Total energy + Delta-G solvation = -3263.821494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50647 -39.08461 -38.30197 -36.45320 -33.67249 -32.60330 -30.71776 -30.42978 -29.56342 -28.79074 -25.15642 -24.18544 -22.96488 -22.73799 -20.99626 -20.61430 -17.89071 -17.63322 -17.41320 -17.03731 -16.41187 -15.76123 -15.09838 -14.58552 -14.45393 -14.27618 -14.06781 -13.92241 -13.76313 -13.55224 -13.02205 -12.49580 -12.21516 -12.04187 -11.78878 -11.55009 -11.28897 -11.15566 -10.87609 -10.74288 -10.25412 -9.86652 -9.82012 -9.64602 -9.47215 -9.21125 -8.42943 -7.85995 -7.34197 -6.97656 -4.48370 1.11198 1.13396 2.42110 2.48389 3.04982 3.09163 3.16324 3.25409 3.60048 3.92055 3.99307 4.28975 4.35514 4.46476 4.51688 4.77344 5.03589 5.20575 5.25950 5.27999 5.47263 5.55526 5.70190 5.77430 5.87388 5.92639 6.09270 6.17010 6.27868 6.45046 6.66262 6.81467 6.92555 7.05431 7.33509 7.44614 7.66018 7.88123 7.91100 8.05215 8.32365 8.65557 8.70860 10.04694 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.005377 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.096358 B = 5206.533193 C = 5966.465527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.081 3.919 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.429 4.429 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.221 4.221 11 C -0.098 4.098 12 C -0.215 4.215 13 C -0.168 4.168 14 C 0.015 3.985 15 O -0.278 6.278 16 C 0.097 3.903 17 H 0.100 0.900 18 C 0.031 3.969 19 O -0.295 6.295 20 C 0.064 3.936 21 C 0.080 3.920 22 N -0.450 5.450 23 C 0.064 3.936 24 C -0.096 4.096 25 C -0.126 4.126 26 H 0.286 0.714 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -6.977 3.337 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.457 4.457 8 H 0.113 0.887 9 C 0.080 3.920 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.234 4.234 13 C -0.187 4.187 14 C -0.029 4.029 15 O -0.192 6.192 16 C 0.039 3.961 17 H 0.118 0.882 18 C -0.045 4.045 19 O -0.207 6.207 20 C 0.016 3.984 21 C -0.078 4.078 22 N -0.159 5.159 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.135 4.135 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.631 -7.620 4.019 10.872 hybrid contribution 0.783 1.673 -0.731 1.986 sum 7.414 -5.948 3.288 10.057 Atomic orbital electron populations 1.69675 1.07967 1.30247 1.35365 1.26159 0.94830 1.01541 0.91236 0.86322 0.80738 0.79751 0.79162 1.19488 1.21865 1.16984 1.19332 0.91342 0.95895 1.39167 0.88741 1.17141 0.92994 0.90664 0.91168 1.20671 0.95374 1.04189 1.03798 1.20323 0.93898 0.98050 0.99372 1.20140 0.98013 1.00351 1.04908 1.20707 0.93602 1.01306 1.03081 1.19127 0.91465 0.95823 0.96454 1.86190 1.35807 1.37743 1.59438 1.22146 0.91917 0.85978 0.96032 0.88216 1.24537 1.03444 0.85552 0.90930 1.86819 1.45426 1.26086 1.62385 1.20674 0.90195 0.94702 0.92879 1.21964 0.93909 0.91696 1.00231 1.67554 1.08910 1.28772 1.10713 1.22707 0.99814 0.95461 0.91294 1.21502 0.94361 0.94126 1.01621 1.20916 0.99295 0.98104 0.95205 0.90379 0.87288 0.88618 0.88555 0.88186 0.86700 0.88716 0.82146 0.81861 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.36 13.93 55.55 0.77 -20.58 16 2 C 0.08 2.09 5.45 -17.33 -0.09 2.00 16 3 Si 0.91 20.46 24.47 -169.99 -4.16 16.30 16 4 H -0.27 -5.77 6.51 56.52 0.37 -5.40 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.25 -5.64 6.92 56.52 0.39 -5.25 16 7 C -0.43 -11.48 9.20 -37.84 -0.35 -11.82 16 8 H 0.09 2.71 7.94 -52.49 -0.42 2.29 16 9 C 0.08 2.07 5.11 -106.68 -0.55 1.53 16 10 C -0.22 -5.14 7.11 -39.28 -0.28 -5.41 16 11 C -0.10 -2.03 9.97 -40.00 -0.40 -2.43 16 12 C -0.21 -4.19 10.04 -39.34 -0.39 -4.59 16 13 C -0.17 -3.30 8.97 -39.48 -0.35 -3.65 16 14 C 0.02 0.34 6.72 -38.33 -0.26 0.08 16 15 O -0.28 -5.86 9.27 -18.64 -0.17 -6.03 16 16 C 0.10 1.62 2.90 -26.64 -0.08 1.54 16 17 H 0.10 1.54 6.16 -51.93 -0.32 1.22 16 18 C 0.03 0.45 7.67 38.09 0.29 0.74 16 19 O -0.29 -4.36 11.10 -19.60 -0.22 -4.58 16 20 C 0.06 0.96 7.09 -38.90 -0.28 0.68 16 21 C 0.08 1.09 11.22 -17.26 -0.19 0.90 16 22 N -0.45 -6.36 10.32 -12.98 -0.13 -6.49 16 23 C 0.06 0.85 11.21 -17.45 -0.20 0.65 16 24 C -0.10 -1.41 10.10 -39.64 -0.40 -1.81 16 25 C -0.13 -2.02 6.04 -104.12 -0.63 -2.65 16 26 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 27 H 0.11 2.52 4.51 -52.48 -0.24 2.29 16 28 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 30 H 0.10 1.65 5.84 -52.48 -0.31 1.34 16 31 H 0.12 1.40 8.02 -51.93 -0.42 0.98 16 32 H 0.09 1.45 8.11 -51.93 -0.42 1.02 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -28.52 297.58 -6.99 -35.51 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.41 Total: 5.66 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -4.15 Total: -24.26 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.64 Total: -27.08 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.39 Total: -10.61 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.16 Total: 16.30 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.52 -6.99 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230279232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.552 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds