Wall clock time and date at job start Tue Mar 31 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86799 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46957 * 239.99362 * 3 2 1 5 5 H 1.48494 * 109.47346 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47286 * 119.99931 * 3 2 1 7 7 C 1.38670 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99781 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.35625 * 117.00215 * 185.05978 * 9 7 2 11 11 C 1.38773 * 120.13959 * 354.38867 * 10 9 7 12 12 C 1.38095 * 120.05457 * 179.97438 * 11 10 9 13 13 C 1.38479 * 120.35538 * 0.02562 * 12 11 10 14 14 C 1.37961 * 120.28601 * 359.69742 * 13 12 11 15 15 C 1.39420 * 119.93391 * 0.55569 * 14 13 12 16 16 C 1.48032 * 120.16996 * 179.74646 * 15 14 13 17 17 C 1.39301 * 120.21272 * 64.70406 * 16 15 14 18 18 C 1.37980 * 120.01505 * 180.02562 * 17 16 15 19 19 C 1.38560 * 120.44208 * 359.95376 * 18 17 16 20 20 C 1.37911 * 120.42742 * 0.04032 * 19 18 17 21 21 C 1.39533 * 119.96962 * 359.97438 * 20 19 18 22 22 C 1.47572 * 120.21391 * 180.02562 * 21 20 19 23 23 N 1.34775 * 120.00292 * 359.97438 * 22 21 20 24 24 O 1.21586 * 120.00151 * 179.97438 * 22 21 20 25 25 H 0.96999 * 120.00153 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.97286 * 359.95968 * 11 10 9 27 27 H 1.08001 * 119.81938 * 180.02562 * 12 11 10 28 28 H 1.07998 * 119.86172 * 179.97438 * 13 12 11 29 29 H 1.08003 * 120.03090 * 180.30082 * 14 13 12 30 30 H 1.08001 * 119.99120 * 0.02562 * 17 16 15 31 31 H 1.07998 * 119.77968 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.78564 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.01201 * 180.25224 * 20 19 18 34 34 H 0.97005 * 120.00306 * 359.97438 * 23 22 21 35 35 H 0.96999 * 120.00315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6963 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6965 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0693 -3.5034 0.1077 11 6 3.4556 -3.4403 0.0939 12 6 4.2017 -4.5971 0.2036 13 6 3.5744 -5.8254 0.3273 14 6 2.1972 -5.9043 0.3484 15 6 1.4321 -4.7445 0.2331 16 6 -0.0461 -4.8237 0.2494 17 6 -0.7120 -5.2606 1.3923 18 6 -2.0899 -5.3334 1.4028 19 6 -2.8205 -4.9732 0.2820 20 6 -2.1799 -4.5380 -0.8592 21 6 -0.7872 -4.4580 -0.8892 22 6 -0.0962 -3.9925 -2.1073 23 7 -0.8105 -3.6436 -3.1956 24 8 1.1175 -3.9238 -2.1290 25 1 -0.4850 0.8400 -0.0004 26 1 3.9512 -2.4856 -0.0030 27 1 5.2803 -4.5435 0.1928 28 1 4.1658 -6.7251 0.4121 29 1 1.7123 -6.8640 0.4499 30 1 -0.1498 -5.5425 2.2702 31 1 -2.6023 -5.6730 2.2908 32 1 -3.8987 -5.0338 0.3020 33 1 -2.7563 -4.2551 -1.7276 34 1 -1.7788 -3.6987 -3.1785 35 1 -0.3563 -3.3380 -3.9964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239762017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:43 Heat of formation + Delta-G solvation = -4.196244 kcal Electronic energy + Delta-G solvation = -22158.728633 eV Core-core repulsion = 18894.636623 eV Total energy + Delta-G solvation = -3264.092009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84642 -38.39691 -37.45662 -36.11552 -33.29935 -32.22054 -31.81239 -30.44698 -28.99337 -28.05046 -25.23154 -23.62640 -22.72552 -21.24650 -20.65492 -19.81147 -17.80066 -17.69584 -16.74287 -16.23005 -15.51944 -14.79570 -14.55144 -14.45120 -14.14053 -14.06375 -13.88435 -13.51711 -13.20148 -12.82292 -12.67630 -12.44742 -11.95270 -11.60419 -11.43752 -11.22270 -11.02513 -10.74513 -10.64642 -10.42119 -10.37464 -9.42316 -9.18154 -9.05265 -8.68957 -8.54937 -8.42142 -7.76064 -6.87002 -6.34755 -3.90389 1.34381 1.70184 2.39128 2.63349 3.17874 3.19537 3.20735 3.54510 4.04458 4.07679 4.43550 4.73586 5.15677 5.20520 5.22556 5.32282 5.40850 5.43689 5.76502 5.80571 5.84096 5.96201 6.15980 6.23884 6.36850 6.46484 6.61632 6.76427 6.87084 6.90254 7.04795 7.21793 7.23200 7.35434 7.41860 7.54001 7.57644 7.91694 8.00093 8.10996 8.96335 9.11708 9.86449 10.83046 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.008090 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.417446 B = 3460.111774 C = 4396.145004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.384 4.384 8 H 0.088 0.912 9 O -0.164 6.164 10 C 0.211 3.789 11 C -0.236 4.236 12 C -0.068 4.068 13 C -0.221 4.221 14 C -0.060 4.060 15 C -0.130 4.130 16 C 0.053 3.947 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.141 4.141 20 C -0.087 4.087 21 C -0.114 4.114 22 C 0.564 3.436 23 N -0.859 5.859 24 O -0.504 6.504 25 H 0.267 0.733 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.392 0.608 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -8.921 -1.244 10.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.105 0.895 9 O -0.066 6.066 10 C 0.156 3.844 11 C -0.256 4.256 12 C -0.087 4.087 13 C -0.239 4.239 14 C -0.079 4.079 15 C -0.132 4.132 16 C 0.052 3.948 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.159 4.159 20 C -0.106 4.106 21 C -0.117 4.117 22 C 0.350 3.650 23 N -0.424 5.424 24 O -0.378 6.378 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.221 0.779 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.079 -8.699 -1.097 9.670 hybrid contribution 0.157 1.155 -0.425 1.241 sum -3.922 -7.544 -1.522 8.638 Atomic orbital electron populations 1.70032 1.05755 1.27258 1.46751 1.25188 0.95778 0.98500 0.96894 0.85868 0.78754 0.80214 0.79111 1.19682 1.20422 1.19600 1.21242 0.91681 0.81083 1.52082 0.89492 1.83914 1.34059 1.11150 1.77481 1.19016 0.89669 0.87040 0.88636 1.21018 0.93658 0.98850 1.12032 1.20733 0.98190 0.92477 0.97275 1.20374 0.94020 0.96765 1.12787 1.20545 0.93477 0.95456 0.98396 1.17606 0.90258 0.91703 1.13600 1.18675 0.92606 0.92180 0.91367 1.21212 0.94174 1.01157 0.97440 1.21130 0.93951 0.98703 0.97924 1.20930 0.99500 1.01917 0.93511 1.21113 0.93086 0.98098 0.98308 1.19922 0.93227 1.03748 0.94850 1.18067 0.87114 0.76844 0.82971 1.43696 1.10545 1.71798 1.16337 1.90875 1.13213 1.51554 1.82182 0.92358 0.85844 0.87846 0.87838 0.87417 0.85664 0.86111 0.86144 0.86254 0.77913 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.15 9.49 30.89 0.29 -10.86 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 9 O -0.16 -4.78 7.92 -18.37 -0.15 -4.93 16 10 C 0.21 5.47 4.49 -38.69 -0.17 5.29 16 11 C -0.24 -5.66 9.16 -39.44 -0.36 -6.02 16 12 C -0.07 -1.40 10.03 -39.54 -0.40 -1.79 16 13 C -0.22 -4.24 10.03 -39.59 -0.40 -4.64 16 14 C -0.06 -1.21 9.73 -39.24 -0.38 -1.59 16 15 C -0.13 -2.98 3.94 -104.75 -0.41 -3.39 16 16 C 0.05 1.11 4.97 -104.56 -0.52 0.59 16 17 C -0.12 -2.14 9.72 -39.28 -0.38 -2.53 16 18 C -0.10 -1.46 10.02 -39.56 -0.40 -1.86 16 19 C -0.14 -2.02 10.02 -39.58 -0.40 -2.41 16 20 C -0.09 -1.40 9.53 -39.22 -0.37 -1.77 16 21 C -0.11 -2.30 5.69 -104.68 -0.60 -2.89 16 22 C 0.56 11.96 7.54 -12.45 -0.09 11.87 16 23 N -0.86 -13.69 8.82 30.47 0.27 -13.42 16 24 O -0.50 -12.72 12.96 -13.58 -0.18 -12.90 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.12 2.95 5.64 -52.49 -0.30 2.65 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.12 1.50 6.40 -52.49 -0.34 1.16 16 34 H 0.39 4.86 6.86 -40.82 -0.28 4.58 16 35 H 0.40 5.80 8.93 -40.82 -0.36 5.43 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -35.10 303.82 -7.65 -42.75 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -3.22 Total: 13.35 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -4.69 Total: -20.97 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 1.03 Total: -38.12 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.32 Total: -17.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.10 -7.65 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239762017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.553 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds