Wall clock time and date at job start Tue Mar 31 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 119.99586 * 2 1 4 4 H 1.48504 * 109.47073 * 269.99802 * 3 2 1 5 5 H 1.48498 * 109.47341 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47017 * 149.99633 * 3 2 1 7 7 C 1.38643 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00555 * 0.02562 * 7 2 1 9 9 O 1.34822 * 119.99727 * 180.02562 * 7 2 1 10 10 C 1.35658 * 116.99724 * 185.05623 * 9 7 2 11 11 C 1.38757 * 120.14080 * 354.39751 * 10 9 7 12 12 C 1.38105 * 120.05086 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38011 * 120.26829 * 0.02562 * 13 12 11 15 15 C 1.39279 * 119.94840 * 359.97438 * 14 13 12 16 16 C 1.48302 * 120.15921 * 179.97438 * 15 14 13 17 17 C 1.39511 * 120.05524 * 130.02785 * 16 15 14 18 18 C 1.38100 * 120.16799 * 180.02562 * 17 16 15 19 19 C 1.38068 * 120.27790 * 359.94815 * 18 17 16 20 20 C 1.39625 * 120.11260 * 0.03263 * 19 18 17 21 21 C 1.47864 * 120.08568 * 179.97438 * 20 19 18 22 22 N 1.34772 * 119.99945 * 359.97438 * 21 20 19 23 23 O 1.21550 * 119.99754 * 179.97438 * 21 20 19 24 24 C 1.39118 * 120.05569 * 309.75022 * 16 15 14 25 25 H 0.96998 * 120.00576 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.97105 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.83678 * 179.71656 * 12 11 10 28 28 H 1.08007 * 119.86488 * 179.97438 * 13 12 11 29 29 H 1.08006 * 120.02667 * 179.97438 * 14 13 12 30 30 H 1.08002 * 119.91596 * 359.97075 * 17 16 15 31 31 H 1.07997 * 119.85736 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.94346 * 180.02562 * 19 18 17 33 33 H 0.97001 * 120.00031 * 0.02562 * 22 21 20 34 34 H 0.96996 * 119.99997 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.14338 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9730 -2.4047 -0.1050 11 6 3.2252 -3.5734 -0.0908 12 6 3.8542 -4.7982 -0.1983 13 6 5.2313 -4.8684 -0.3212 14 6 5.9880 -3.7143 -0.3368 15 6 5.3654 -2.4731 -0.2291 16 6 6.1740 -1.2300 -0.2448 17 6 5.8280 -0.1821 -1.0983 18 6 6.5797 0.9763 -1.1151 19 6 7.6772 1.1061 -0.2876 20 6 8.0338 0.0648 0.5715 21 6 9.2096 0.2042 1.4572 22 7 9.9390 1.3372 1.4354 23 8 9.5183 -0.7032 2.2048 24 6 7.2754 -1.1047 0.5958 25 1 -0.4851 0.8400 -0.0004 26 1 2.1505 -3.5253 0.0052 27 1 3.2692 -5.7060 -0.1823 28 1 5.7156 -5.8302 -0.4044 29 1 7.0622 -3.7736 -0.4324 30 1 4.9707 -0.2774 -1.7481 31 1 6.3075 1.7842 -1.7782 32 1 8.2610 2.0145 -0.3049 33 1 9.6924 2.0614 0.8390 34 1 10.7106 1.4285 2.0161 35 1 7.5446 -1.9117 1.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239885375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:36 Heat of formation + Delta-G solvation = -16.382604 kcal Electronic energy + Delta-G solvation = -21178.429038 eV Core-core repulsion = 17913.808588 eV Total energy + Delta-G solvation = -3264.620450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08734 -39.30011 -37.82391 -36.53931 -33.95122 -32.53618 -32.08345 -30.85439 -29.37145 -28.38155 -25.35941 -23.97432 -23.13320 -21.36669 -21.10071 -20.06598 -18.23479 -17.92267 -17.21136 -16.66154 -15.84235 -15.33829 -14.96846 -14.71463 -14.61708 -14.25090 -13.87952 -13.79549 -13.71789 -13.47504 -12.88274 -12.48309 -12.27930 -12.26659 -11.67936 -11.46568 -11.19583 -10.89238 -10.78726 -10.73532 -10.24802 -10.04845 -9.81818 -9.47672 -9.02850 -8.90633 -8.74908 -8.01449 -7.36041 -6.49644 -4.15914 1.00296 1.40574 2.09420 2.21769 2.98979 3.14996 3.18724 3.35662 3.44772 4.03874 4.16487 4.43561 4.72819 4.81280 4.88562 5.00806 5.11831 5.23570 5.52739 5.59918 5.65466 5.71245 5.90005 5.96568 6.15940 6.18652 6.35552 6.45950 6.55004 6.65631 6.71284 6.78414 6.97147 7.09192 7.18517 7.22643 7.24892 7.52387 7.71363 7.94907 8.19466 8.85211 9.46111 10.57646 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.006729 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.965740 B = 4160.326645 C = 5780.479243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.206 6.206 10 C 0.174 3.826 11 C -0.220 4.220 12 C -0.069 4.069 13 C -0.205 4.205 14 C -0.059 4.059 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.065 4.065 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.149 4.149 21 C 0.568 3.432 22 N -0.855 5.855 23 O -0.543 6.543 24 C -0.053 4.053 25 H 0.280 0.720 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.400 0.600 34 H 0.402 0.598 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.524 2.115 -2.325 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.110 6.110 10 C 0.121 3.879 11 C -0.240 4.240 12 C -0.087 4.087 13 C -0.224 4.224 14 C -0.077 4.077 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.084 4.084 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.152 4.152 21 C 0.355 3.645 22 N -0.419 5.419 23 O -0.421 6.421 24 C -0.072 4.072 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.230 0.770 34 H 0.232 0.768 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.439 1.820 -1.879 14.674 hybrid contribution 0.137 1.151 -0.041 1.160 sum 14.575 2.971 -1.919 14.998 Atomic orbital electron populations 1.69638 1.05574 1.28587 1.47491 1.24432 0.94968 0.98718 0.95544 0.86323 0.80861 0.81662 0.79161 1.19663 1.20788 1.17713 1.20786 0.76827 0.96684 1.52306 0.87517 1.83573 1.22535 1.25418 1.79471 1.19024 0.90488 0.85761 0.92671 1.21243 1.01212 0.91725 1.09773 1.20898 0.94364 0.96768 0.96663 1.20609 0.93974 0.97360 1.10484 1.20742 0.98646 0.90849 0.97496 1.17794 0.89913 0.92174 1.14141 1.18623 0.93895 0.93840 0.95156 1.21569 0.97888 0.92153 0.96746 1.21001 0.95635 0.98084 1.00025 1.21134 0.97385 0.97307 0.95856 1.19656 0.97951 0.96872 1.00717 1.18362 0.82495 0.81827 0.81852 1.43749 1.33200 1.18806 1.46102 1.90798 1.70495 1.39966 1.40845 1.21334 0.92916 0.96445 0.96527 0.90957 0.84666 0.87038 0.87119 0.86576 0.85093 0.85595 0.86204 0.77009 0.76758 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 13.96 55.48 0.77 -23.87 16 2 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 3 Si 0.89 20.85 28.62 -169.99 -4.86 15.99 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.25 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.39 -10.57 9.95 30.88 0.31 -10.26 16 8 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 9 O -0.21 -5.15 6.93 0.35 0.00 -5.14 16 10 C 0.17 3.88 6.55 -38.74 -0.25 3.62 16 11 C -0.22 -4.60 9.16 -39.44 -0.36 -4.97 16 12 C -0.07 -1.21 10.03 -39.55 -0.40 -1.60 16 13 C -0.21 -3.37 10.03 -39.59 -0.40 -3.77 16 14 C -0.06 -1.02 9.51 -39.28 -0.37 -1.39 16 15 C -0.14 -2.73 5.48 -104.72 -0.57 -3.30 16 16 C -0.02 -0.28 5.27 -104.96 -0.55 -0.83 16 17 C -0.07 -1.15 8.78 -39.16 -0.34 -1.50 16 18 C -0.13 -1.88 10.02 -39.69 -0.40 -2.28 16 19 C -0.10 -1.26 9.54 -39.13 -0.37 -1.64 16 20 C -0.15 -2.24 5.87 -105.01 -0.62 -2.85 16 21 C 0.57 8.09 8.05 -12.32 -0.10 7.99 16 22 N -0.85 -7.79 8.82 30.53 0.27 -7.52 16 23 O -0.54 -9.75 17.18 5.32 0.09 -9.66 16 24 C -0.05 -0.91 9.06 -38.82 -0.35 -1.27 16 25 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.14 2.95 5.64 -52.48 -0.30 2.65 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.12 1.72 8.04 -52.48 -0.42 1.30 16 30 H 0.13 2.43 7.68 -52.49 -0.40 2.02 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.04 6.39 -52.49 -0.34 0.70 16 33 H 0.40 2.53 6.85 -40.82 -0.28 2.25 16 34 H 0.40 2.97 8.93 -40.82 -0.36 2.61 16 35 H 0.13 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -31.52 308.70 -7.14 -38.67 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.19 Total: 9.19 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -4.88 Total: -22.31 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 1.04 Total: -31.39 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.52 -7.14 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239885375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.284 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds