Wall clock time and date at job start Tue Mar 31 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 119.99586 * 2 1 4 4 H 1.48504 * 109.47073 * 269.99802 * 3 2 1 5 5 H 1.48498 * 109.47341 * 29.99767 * 3 2 1 6 6 H 1.48499 * 109.47017 * 149.99633 * 3 2 1 7 7 C 1.38643 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00555 * 0.02562 * 7 2 1 9 9 O 1.34822 * 119.99727 * 180.02562 * 7 2 1 10 10 C 1.35658 * 116.99724 * 185.05623 * 9 7 2 11 11 C 1.38757 * 120.14080 * 354.39751 * 10 9 7 12 12 C 1.38105 * 120.05086 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38011 * 120.26829 * 0.02562 * 13 12 11 15 15 C 1.39279 * 119.94840 * 359.97438 * 14 13 12 16 16 C 1.48302 * 120.15921 * 179.97438 * 15 14 13 17 17 C 1.39511 * 120.05524 * 130.02785 * 16 15 14 18 18 C 1.38100 * 120.16799 * 180.02562 * 17 16 15 19 19 C 1.38068 * 120.27790 * 359.94815 * 18 17 16 20 20 C 1.39625 * 120.11260 * 0.03263 * 19 18 17 21 21 C 1.47864 * 120.08568 * 179.97438 * 20 19 18 22 22 N 1.34772 * 119.99945 * 359.97438 * 21 20 19 23 23 O 1.21550 * 119.99754 * 179.97438 * 21 20 19 24 24 C 1.39118 * 120.05569 * 309.75022 * 16 15 14 25 25 H 0.96998 * 120.00576 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.97105 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.83678 * 179.71656 * 12 11 10 28 28 H 1.08007 * 119.86488 * 179.97438 * 13 12 11 29 29 H 1.08006 * 120.02667 * 179.97438 * 14 13 12 30 30 H 1.08002 * 119.91596 * 359.97075 * 17 16 15 31 31 H 1.07997 * 119.85736 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.94346 * 180.02562 * 19 18 17 33 33 H 0.97001 * 120.00031 * 0.02562 * 22 21 20 34 34 H 0.96996 * 119.99997 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.14338 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9730 -2.4047 -0.1050 11 6 3.2252 -3.5734 -0.0908 12 6 3.8542 -4.7982 -0.1983 13 6 5.2313 -4.8684 -0.3212 14 6 5.9880 -3.7143 -0.3368 15 6 5.3654 -2.4731 -0.2291 16 6 6.1740 -1.2300 -0.2448 17 6 5.8280 -0.1821 -1.0983 18 6 6.5797 0.9763 -1.1151 19 6 7.6772 1.1061 -0.2876 20 6 8.0338 0.0648 0.5715 21 6 9.2096 0.2042 1.4572 22 7 9.9390 1.3372 1.4354 23 8 9.5183 -0.7032 2.2048 24 6 7.2754 -1.1047 0.5958 25 1 -0.4851 0.8400 -0.0004 26 1 2.1505 -3.5253 0.0052 27 1 3.2692 -5.7060 -0.1823 28 1 5.7156 -5.8302 -0.4044 29 1 7.0622 -3.7736 -0.4324 30 1 4.9707 -0.2774 -1.7481 31 1 6.3075 1.7842 -1.7782 32 1 8.2610 2.0145 -0.3049 33 1 9.6924 2.0614 0.8390 34 1 10.7106 1.4285 2.0161 35 1 7.5446 -1.9117 1.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239885375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:36 Heat of formation + Delta-G solvation = -37.493698 kcal Electronic energy + Delta-G solvation = -21179.344483 eV Core-core repulsion = 17913.808588 eV Total energy + Delta-G solvation = -3265.535895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38092 -40.72786 -39.12023 -38.11575 -34.99456 -34.47339 -33.42371 -32.05022 -30.89755 -29.79973 -27.25668 -25.16153 -24.48701 -22.91998 -22.42724 -21.28958 -19.79474 -19.41794 -18.63908 -17.79929 -17.04217 -16.78695 -16.53113 -16.06363 -15.87524 -15.72713 -15.46151 -15.26667 -15.21122 -14.68231 -14.33865 -14.16850 -14.08307 -13.57051 -13.10473 -12.88322 -12.61686 -12.50195 -12.43786 -12.15798 -11.90264 -11.35361 -11.17463 -10.91985 -10.75285 -10.29660 -9.96128 -9.46879 -8.94301 -8.50859 -6.22261 -0.21014 0.10912 0.63160 0.74939 1.29082 1.33181 1.51337 1.83826 2.26991 2.49746 2.73065 2.86059 3.05348 3.12653 3.67361 3.82943 3.94951 4.11017 4.14272 4.24875 4.30756 4.48570 4.52192 4.64517 4.81214 4.89432 4.95293 5.12435 5.24431 5.34086 5.41835 5.54894 5.58153 5.70545 5.77870 5.84274 5.88564 5.93185 6.21056 6.40042 6.83720 7.27383 7.57157 8.60540 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.006729 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.965740 B = 4160.326645 C = 5780.479243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.398 4.398 8 H 0.081 0.919 9 O -0.227 6.227 10 C 0.136 3.864 11 C -0.240 4.240 12 C -0.070 4.070 13 C -0.181 4.181 14 C -0.063 4.063 15 C -0.136 4.136 16 C -0.042 4.042 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.567 3.433 22 N -0.825 5.825 23 O -0.588 6.588 24 C -0.065 4.065 25 H 0.284 0.716 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.150 3.219 -2.845 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.474 4.474 8 H 0.098 0.902 9 O -0.134 6.134 10 C 0.086 3.914 11 C -0.260 4.260 12 C -0.088 4.088 13 C -0.200 4.200 14 C -0.081 4.081 15 C -0.138 4.138 16 C -0.042 4.042 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.094 4.094 20 C -0.157 4.157 21 C 0.354 3.646 22 N -0.390 5.390 23 O -0.470 6.470 24 C -0.085 4.085 25 H 0.094 0.906 26 H 0.130 0.870 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.129 0.871 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.251 0.749 34 H 0.247 0.753 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.111 2.933 -2.422 18.507 hybrid contribution -0.739 0.597 0.092 0.954 sum 17.372 3.529 -2.331 17.880 Atomic orbital electron populations 1.69728 1.06923 1.29527 1.50081 1.25202 0.95759 1.01938 0.95514 0.85394 0.79111 0.77670 0.79888 1.17921 1.19878 1.18334 1.20712 0.78195 0.96064 1.52422 0.90174 1.83533 1.20881 1.26704 1.82245 1.19542 0.91882 0.85527 0.94469 1.21308 1.00386 0.93176 1.11096 1.21250 0.95476 0.96421 0.95674 1.21152 0.93296 0.98970 1.06545 1.21183 1.00253 0.90140 0.96514 1.18197 0.88965 0.94210 1.12392 1.18644 0.94791 0.93947 0.96806 1.21599 0.98215 0.93586 0.97131 1.21377 0.95358 0.97494 1.00435 1.21632 0.96444 0.98115 0.93223 1.19870 0.97999 0.96672 1.01165 1.18286 0.82539 0.82543 0.81278 1.43490 1.32364 1.17472 1.45663 1.90785 1.71627 1.41872 1.42674 1.21288 0.93145 0.97543 0.96476 0.90640 0.86963 0.83906 0.82812 0.83712 0.87144 0.82566 0.80959 0.74924 0.75290 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.96 21.61 0.30 -54.23 16 2 C 0.01 0.83 5.49 84.83 0.47 1.29 16 3 Si 0.96 44.11 28.62 68.60 1.96 46.07 16 4 H -0.25 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.40 -23.01 9.95 67.92 0.68 -22.33 16 8 H 0.08 4.89 5.44 -2.91 -0.02 4.87 16 9 O -0.23 -12.00 6.93 -21.65 -0.15 -12.15 16 10 C 0.14 6.35 6.55 22.81 0.15 6.50 16 11 C -0.24 -10.54 9.16 22.36 0.20 -10.33 16 12 C -0.07 -2.40 10.03 22.29 0.22 -2.18 16 13 C -0.18 -5.44 10.03 22.26 0.22 -5.22 16 14 C -0.06 -2.06 9.51 22.47 0.21 -1.85 16 15 C -0.14 -5.43 5.48 -19.93 -0.11 -5.54 16 16 C -0.04 -1.54 5.27 -20.08 -0.11 -1.65 16 17 C -0.09 -3.04 8.78 22.54 0.20 -2.84 16 18 C -0.13 -3.36 10.02 22.20 0.22 -3.14 16 19 C -0.08 -1.63 9.54 22.56 0.22 -1.42 16 20 C -0.15 -4.23 5.87 -20.11 -0.12 -4.35 16 21 C 0.57 14.58 8.05 86.79 0.70 15.28 16 22 N -0.82 -11.51 8.82 -175.60 -1.55 -13.06 16 23 O -0.59 -20.31 17.18 -3.87 -0.07 -20.38 16 24 C -0.07 -2.20 9.06 22.76 0.21 -1.99 16 25 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.11 5.36 5.64 -2.91 -0.02 5.35 16 27 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 29 H 0.15 3.90 8.04 -2.91 -0.02 3.87 16 30 H 0.11 4.24 7.68 -2.91 -0.02 4.21 16 31 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.17 1.82 6.39 -2.91 -0.02 1.80 16 33 H 0.42 2.93 6.85 -92.71 -0.64 2.29 16 34 H 0.41 4.45 8.93 -92.71 -0.83 3.63 16 35 H 0.12 4.32 7.63 -2.91 -0.02 4.29 16 Total: -1.00 -74.57 308.70 3.56 -71.01 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.30 Total: 22.49 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 3.36 Total: -39.76 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.25 Total: -67.29 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.22 Total: -32.52 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Total: -74.57 3.56 -71.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239885375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.518 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds