Wall clock time and date at job start Tue Mar 31 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38158 * 119.90672 * 2 1 4 4 C 1.38011 * 120.27775 * 180.28113 * 3 2 1 5 5 C 1.39717 * 120.09406 * 359.97438 * 4 3 2 6 6 C 1.47747 * 120.08861 * 179.97438 * 5 4 3 7 7 O 1.21467 * 119.99560 * 180.02562 * 6 5 4 8 8 O 1.34706 * 119.99938 * 0.02562 * 6 5 4 9 9 C 1.39410 * 119.82160 * 0.02562 * 5 4 3 10 10 C 1.39104 * 119.71924 * 359.97438 * 9 5 4 11 11 C 1.48382 * 120.04520 * 180.02562 * 10 9 5 12 12 C 1.38888 * 119.61705 * 311.95156 * 11 10 9 13 13 C 1.40850 * 118.76614 * 179.97438 * 12 11 10 14 14 C 1.41523 * 120.98809 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00120 * 152.48659 * 14 13 12 16 16 C 1.40049 * 119.99838 * 332.48085 * 14 13 12 17 17 N 1.30733 * 120.00075 * 349.32630 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 169.32401 * 16 14 13 19 19 H 1.48502 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47391 * 120.00192 * 18 16 14 21 21 H 1.48505 * 109.47111 * 240.00201 * 18 16 14 22 22 C 1.41147 * 118.02255 * 359.97438 * 13 12 11 23 23 C 1.37745 * 119.06919 * 0.02562 * 22 13 12 24 24 N 1.31919 * 121.15898 * 359.74138 * 23 22 13 25 25 H 1.09006 * 109.47167 * 265.31451 * 1 2 3 26 26 H 1.09004 * 109.47224 * 25.31383 * 1 2 3 27 27 H 1.09002 * 109.47253 * 145.32107 * 1 2 3 28 28 H 1.07995 * 119.86339 * 0.25749 * 3 2 1 29 29 H 1.07994 * 119.95720 * 179.97438 * 4 3 2 30 30 H 0.96701 * 116.99781 * 180.02562 * 8 6 5 31 31 H 1.08001 * 120.13910 * 180.02562 * 9 5 4 32 32 H 1.07999 * 120.61891 * 359.95390 * 12 11 10 33 33 H 0.97003 * 119.99944 * 180.02562 * 17 16 14 34 34 H 1.08003 * 120.45954 * 179.97438 * 22 13 12 35 35 H 1.08003 * 119.41555 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1976 0.0000 4 6 3.5759 1.2065 -0.0058 5 6 4.2843 0.0023 -0.0113 6 6 5.7617 0.0120 -0.0181 7 8 6.3759 -1.0360 -0.0233 8 8 6.4275 1.1830 -0.0186 9 6 3.5933 -1.2085 -0.0113 10 6 2.2023 -1.2087 -0.0054 11 6 1.4595 -2.4932 -0.0048 12 6 1.8108 -3.4896 -0.9063 13 6 1.0941 -4.7021 -0.8897 14 6 1.4120 -5.7487 -1.7877 15 1 1.2087 -6.7739 -1.5157 16 6 1.9901 -5.4550 -3.0290 17 7 2.0456 -4.2178 -3.4479 18 14 2.6820 -6.8310 -4.0860 19 1 2.4980 -8.1300 -3.3903 20 1 1.9692 -6.8610 -5.3884 21 1 4.1296 -6.5958 -4.3193 22 6 0.0494 -4.8421 0.0491 23 6 -0.2265 -3.7979 0.9040 24 7 0.4702 -2.6785 0.8615 25 1 -0.3634 -0.0839 1.0243 26 1 -0.3634 0.9290 -0.4394 27 1 -0.3634 -0.8451 -0.5847 28 1 1.6521 2.1307 0.0042 29 1 4.1091 2.1457 -0.0062 30 1 7.3935 1.1387 -0.0236 31 1 4.1357 -2.1424 -0.0150 32 1 2.6183 -3.3376 -1.6071 33 1 2.4457 -4.0144 -4.3078 34 1 -0.5259 -5.7549 0.0958 35 1 -1.0249 -3.8989 1.6242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240999997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:25 Heat of formation + Delta-G solvation = -52.745444 kcal Electronic energy + Delta-G solvation = -21063.747262 eV Core-core repulsion = 17797.550001 eV Total energy + Delta-G solvation = -3266.197261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26159 -39.08148 -37.76440 -35.98921 -34.20837 -32.74627 -31.78639 -30.58911 -28.56725 -27.34205 -25.94738 -23.44378 -22.84848 -21.70698 -20.91086 -20.04099 -18.06926 -17.56050 -16.72391 -15.60089 -15.49194 -15.08126 -15.03734 -14.50829 -14.29431 -14.22173 -13.62411 -13.27788 -13.13972 -12.67202 -12.56095 -12.33984 -11.77748 -11.73910 -11.49501 -11.37880 -11.29203 -11.22053 -10.93316 -10.84614 -10.45166 -10.28066 -9.94425 -9.51556 -8.82444 -8.53940 -8.07574 -8.03559 -7.43520 -6.86374 -4.66851 0.94413 1.54483 2.53689 2.74006 2.85224 3.01434 3.06206 3.11065 3.18603 3.83155 4.05551 4.58377 4.96742 5.10125 5.14862 5.34142 5.43010 5.51496 5.69641 5.88520 6.02179 6.09692 6.18152 6.21833 6.43139 6.52157 6.56762 6.58206 6.66832 6.78576 6.86412 6.96234 7.08030 7.14587 7.27870 7.36683 7.79519 7.99090 8.01944 8.36293 8.64655 8.68611 9.44955 10.04680 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.005844 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.821316 B = 4789.977325 C = 6142.680602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.021 4.021 3 C -0.143 4.143 4 C -0.068 4.068 5 C -0.144 4.144 6 C 0.529 3.471 7 O -0.515 6.515 8 O -0.516 6.516 9 C -0.035 4.035 10 C -0.016 4.016 11 C 0.132 3.868 12 C -0.179 4.179 13 C 0.125 3.875 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.790 5.790 18 Si 0.914 3.086 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.270 1.270 22 C -0.268 4.268 23 C 0.100 3.900 24 N -0.556 5.556 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.410 0.590 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.283 0.717 34 H 0.102 0.898 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 9.423 2.721 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.022 4.022 3 C -0.161 4.161 4 C -0.086 4.086 5 C -0.145 4.145 6 C 0.374 3.626 7 O -0.404 6.404 8 O -0.327 6.327 9 C -0.054 4.054 10 C -0.017 4.017 11 C 0.001 3.999 12 C -0.201 4.201 13 C 0.117 3.883 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.416 5.416 18 Si 0.738 3.262 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.291 4.291 23 C -0.056 4.056 24 N -0.271 5.271 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.267 0.733 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.411 9.977 3.112 10.725 hybrid contribution 1.192 -1.383 -1.248 2.211 sum 3.603 8.594 1.864 9.503 Atomic orbital electron populations 1.20781 0.90365 1.01820 1.03269 1.20301 0.96921 0.91827 0.93105 1.20907 0.93707 0.97587 1.03887 1.21294 0.94158 0.96936 0.96225 1.18791 0.88350 0.94951 1.12391 1.21000 0.89010 0.80721 0.71873 1.90892 1.69824 1.33310 1.46412 1.84561 1.26592 1.35359 1.86225 1.21325 0.93259 0.97153 0.93641 1.18533 0.91556 0.92457 0.99172 1.19091 0.94475 0.91818 0.94501 1.22286 1.02525 0.94547 1.00791 1.17797 0.88244 0.92319 0.89920 1.19644 1.35176 0.94610 0.99143 0.89925 1.25973 0.93317 0.96653 0.98468 1.69725 1.32694 1.19714 1.19420 0.86162 0.79260 0.81409 0.79390 1.18277 1.19779 1.19528 1.21968 1.02338 1.00481 1.04295 1.21832 0.97113 0.89622 0.97005 1.67383 1.09845 1.24748 1.25091 0.90084 0.92679 0.90708 0.85443 0.85007 0.73250 0.84450 0.85138 0.90555 0.87990 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 8.74 36.01 0.31 -1.40 16 2 C -0.02 -0.36 5.91 -104.20 -0.62 -0.98 16 3 C -0.14 -2.05 9.65 -39.69 -0.38 -2.43 16 4 C -0.07 -0.96 9.61 -39.11 -0.38 -1.34 16 5 C -0.14 -2.39 5.87 -105.02 -0.62 -3.01 16 6 C 0.53 8.27 8.27 34.62 0.29 8.56 16 7 O -0.51 -9.63 17.13 -19.24 -0.33 -9.96 16 8 O -0.52 -5.81 12.67 -40.51 -0.51 -6.32 16 9 C -0.03 -0.68 8.98 -38.82 -0.35 -1.02 16 10 C -0.02 -0.33 5.60 -104.95 -0.59 -0.92 16 11 C 0.13 3.07 5.42 -83.04 -0.45 2.62 16 12 C -0.18 -4.55 8.13 -38.35 -0.31 -4.86 16 13 C 0.13 3.24 5.58 -106.55 -0.60 2.64 16 14 C -0.45 -11.64 9.13 -37.65 -0.34 -11.98 16 15 H 0.08 2.03 7.87 -52.49 -0.41 1.61 16 16 C 0.07 1.83 5.29 -17.34 -0.09 1.73 16 17 N -0.79 -19.88 10.82 55.55 0.60 -19.28 16 18 Si 0.91 18.27 29.57 -169.99 -5.03 13.24 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 C -0.27 -6.29 9.90 -38.66 -0.38 -6.68 16 23 C 0.10 2.19 11.15 -17.69 -0.20 1.99 16 24 N -0.56 -12.63 8.73 -9.94 -0.09 -12.72 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 27 H 0.07 1.42 6.94 -51.93 -0.36 1.06 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.50 7.60 -52.49 -0.40 1.11 16 30 H 0.41 2.66 9.11 45.56 0.42 3.07 16 31 H 0.14 2.82 7.57 -52.49 -0.40 2.42 16 32 H 0.13 3.46 6.17 -52.49 -0.32 3.13 16 33 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 34 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 35 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -29.58 311.39 -8.08 -37.66 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.72 Total: 9.74 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -4.70 Total: -17.07 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.51 Total: -32.00 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.84 Total: -16.28 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.58 -8.08 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240999997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.082 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds