Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 119.91044 * 2 1 4 4 C 1.38005 * 120.28063 * 179.97438 * 3 2 1 5 5 C 1.39704 * 120.09158 * 0.04310 * 4 3 2 6 6 C 1.47736 * 120.09629 * 180.25274 * 5 4 3 7 7 O 1.21467 * 120.00250 * 179.71887 * 6 5 4 8 8 O 1.34717 * 119.99943 * 359.73083 * 6 5 4 9 9 C 1.39423 * 119.81438 * 359.97438 * 5 4 3 10 10 C 1.39081 * 119.72473 * 0.02562 * 9 5 4 11 11 C 1.48435 * 120.04578 * 180.02562 * 10 9 5 12 12 C 1.39701 * 120.40333 * 129.99909 * 11 10 9 13 13 N 1.31915 * 121.14747 * 179.97438 * 12 11 10 14 14 C 1.31525 * 122.12150 * 0.02562 * 13 12 11 15 15 C 1.40771 * 120.66276 * 0.02562 * 14 13 12 16 16 C 1.41435 * 120.60642 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99844 * 335.75560 * 16 15 14 18 18 C 1.39927 * 120.00335 * 155.75532 * 16 15 14 19 19 N 1.30827 * 120.00076 * 343.19164 * 18 16 15 20 20 Si 1.86800 * 120.00162 * 163.18876 * 18 16 15 21 21 H 1.48500 * 109.47306 * 90.00182 * 20 18 16 22 22 H 1.48505 * 109.46977 * 210.00185 * 20 18 16 23 23 H 1.48498 * 109.47367 * 330.00001 * 20 18 16 24 24 C 1.39130 * 120.41172 * 309.72766 * 11 10 9 25 25 H 1.09004 * 109.46655 * 269.97860 * 1 2 3 26 26 H 1.08994 * 109.47092 * 29.97532 * 1 2 3 27 27 H 1.08999 * 109.47058 * 149.98067 * 1 2 3 28 28 H 1.08005 * 119.86103 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.95521 * 180.02562 * 4 3 2 30 30 H 0.96699 * 117.00168 * 180.02562 * 8 6 5 31 31 H 1.08001 * 120.13811 * 180.02562 * 9 5 4 32 32 H 1.07993 * 119.42761 * 0.02562 * 12 11 10 33 33 H 1.08001 * 119.67152 * 180.02562 * 14 13 12 34 34 H 0.96999 * 120.00563 * 180.02562 * 19 18 16 35 35 H 1.07998 * 120.95172 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1976 0.0000 4 6 3.5760 1.2065 0.0005 5 6 4.2842 0.0023 0.0002 6 6 5.7615 0.0117 0.0064 7 8 6.3756 -1.0363 0.0112 8 8 6.4277 1.1827 0.0069 9 6 3.5929 -1.2085 -0.0002 10 6 2.2021 -1.2085 -0.0007 11 6 1.4590 -2.4934 -0.0005 12 6 0.4342 -2.7173 0.9222 13 7 -0.2361 -3.8534 0.9351 14 6 0.0215 -4.8271 0.0893 15 6 1.0379 -4.6902 -0.8750 16 6 1.3143 -5.7382 -1.7837 17 1 1.0574 -6.7558 -1.5287 18 6 1.9207 -5.4567 -3.0130 19 7 1.9355 -4.2308 -3.4696 20 14 2.7089 -6.8314 -4.0021 21 1 1.7004 -7.4241 -4.9170 22 1 3.8378 -6.2846 -4.7972 23 1 3.2152 -7.8783 -3.0786 24 6 1.7705 -3.4873 -0.9229 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6522 2.1308 -0.0004 29 1 4.1092 2.1457 0.0009 30 1 7.3936 1.1383 0.0107 31 1 4.1352 -2.1425 -0.0001 32 1 0.1859 -1.9466 1.6367 33 1 -0.5524 -5.7408 0.1349 34 1 2.3555 -4.0357 -4.3219 35 1 2.5546 -3.3431 -1.6514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241002271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = -54.851464 kcal Electronic energy + Delta-G solvation = -21057.806314 eV Core-core repulsion = 17791.517730 eV Total energy + Delta-G solvation = -3266.288585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32733 -39.15732 -37.82476 -36.04084 -34.18742 -33.06388 -32.06415 -30.38106 -28.67128 -27.52964 -25.63726 -23.48775 -22.90879 -21.69430 -20.95147 -20.11255 -17.98697 -17.54847 -16.78293 -15.69851 -15.54862 -15.28104 -15.12115 -15.08449 -14.36261 -14.27669 -13.51315 -13.34120 -13.18356 -12.74194 -12.43561 -11.92832 -11.87589 -11.77331 -11.57873 -11.50702 -11.42574 -11.23203 -11.14684 -10.85809 -10.62344 -10.51462 -9.93716 -9.44488 -8.98034 -8.64657 -8.25560 -7.92191 -7.51233 -6.91940 -4.56428 0.86210 1.48487 2.45774 2.69586 2.88235 3.00239 3.03681 3.07743 3.14038 3.81235 3.99202 4.50843 4.93711 5.04668 5.09909 5.30882 5.43118 5.50089 5.63328 5.85019 5.88582 5.93884 6.06219 6.17736 6.35128 6.41496 6.48278 6.50518 6.52660 6.68417 6.74757 6.95601 6.99460 7.07118 7.16453 7.57861 7.77124 7.83478 7.93750 8.32869 8.59853 8.61838 9.53446 9.99115 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.005827 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.054165 B = 4803.757929 C = 6146.984184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.038 4.038 3 C -0.137 4.137 4 C -0.072 4.072 5 C -0.140 4.140 6 C 0.528 3.472 7 O -0.514 6.514 8 O -0.516 6.516 9 C -0.040 4.040 10 C -0.021 4.021 11 C -0.096 4.096 12 C -0.021 4.021 13 N -0.469 5.469 14 C -0.017 4.017 15 C 0.062 3.938 16 C -0.448 4.448 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.788 5.788 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.410 0.590 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.285 0.715 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 10.533 2.401 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C -0.155 4.155 4 C -0.090 4.090 5 C -0.141 4.141 6 C 0.373 3.627 7 O -0.404 6.404 8 O -0.327 6.327 9 C -0.058 4.058 10 C -0.022 4.022 11 C -0.098 4.098 12 C -0.178 4.178 13 N -0.176 5.176 14 C -0.178 4.178 15 C 0.058 3.942 16 C -0.478 4.478 17 H 0.103 0.897 18 C -0.145 4.145 19 N -0.412 5.412 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.138 4.138 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.268 0.732 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.217 10.297 2.801 11.146 hybrid contribution 1.821 -0.426 -1.290 2.272 sum 5.039 9.872 1.511 11.186 Atomic orbital electron populations 1.20981 0.90595 1.03378 1.02629 1.20300 0.96701 0.92052 0.94764 1.20896 0.93709 0.97584 1.03353 1.21287 0.94169 0.96963 0.96594 1.18854 0.88367 0.95049 1.11833 1.21021 0.89040 0.80741 0.71898 1.90894 1.69830 1.33312 1.46335 1.84563 1.26630 1.35341 1.86195 1.21391 0.93457 0.97046 0.93928 1.18785 0.91859 0.93083 0.98436 1.19327 0.98616 0.92747 0.99098 1.21740 0.98463 0.95991 1.01653 1.66955 1.26564 1.00833 1.23251 1.22535 0.99394 0.97826 0.98058 1.18459 0.90217 0.93057 0.92480 1.19561 1.33764 0.95154 0.99273 0.89749 1.25975 0.93819 0.96683 0.97997 1.69766 1.32346 1.20655 1.18443 0.86247 0.79349 0.81311 0.79585 1.19262 1.19936 1.18222 1.21806 1.00458 0.93298 0.98256 0.90662 0.91923 0.89924 0.85426 0.85006 0.73204 0.84510 0.86141 0.85560 0.90445 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.44 36.01 0.30 -1.44 16 2 C -0.04 -0.61 5.88 -104.21 -0.61 -1.22 16 3 C -0.14 -1.85 9.67 -39.69 -0.38 -2.23 16 4 C -0.07 -0.97 9.61 -39.12 -0.38 -1.35 16 5 C -0.14 -2.24 5.87 -105.03 -0.62 -2.86 16 6 C 0.53 8.03 8.27 34.61 0.29 8.31 16 7 O -0.51 -9.41 17.13 -19.24 -0.33 -9.74 16 8 O -0.52 -5.63 12.67 -40.54 -0.51 -6.14 16 9 C -0.04 -0.74 9.08 -38.83 -0.35 -1.09 16 10 C -0.02 -0.40 5.49 -104.95 -0.58 -0.97 16 11 C -0.10 -2.12 4.71 -104.82 -0.49 -2.61 16 12 C -0.02 -0.45 9.07 -16.97 -0.15 -0.61 16 13 N -0.47 -11.19 10.32 -12.29 -0.13 -11.32 16 14 C -0.02 -0.42 10.96 -16.73 -0.18 -0.60 16 15 C 0.06 1.59 5.59 -106.71 -0.60 1.00 16 16 C -0.45 -11.29 9.08 -37.73 -0.34 -11.63 16 17 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 18 C 0.07 1.78 5.19 -17.35 -0.09 1.69 16 19 N -0.79 -19.53 10.90 55.55 0.61 -18.92 16 20 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.11 -2.80 8.29 -38.24 -0.32 -3.12 16 25 H 0.07 1.00 7.49 -51.93 -0.39 0.61 16 26 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.08 1.45 6.43 -51.93 -0.33 1.11 16 28 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 29 H 0.13 1.44 7.60 -52.49 -0.40 1.04 16 30 H 0.41 2.54 9.11 45.56 0.42 2.95 16 31 H 0.14 2.72 7.64 -52.49 -0.40 2.32 16 32 H 0.12 2.36 6.82 -52.49 -0.36 2.00 16 33 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 35 H 0.13 3.37 6.19 -52.49 -0.32 3.04 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -29.34 308.81 -7.85 -37.19 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -2.60 Total: 10.00 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.50 Total: -18.73 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.48 Total: -30.24 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.84 Total: -15.88 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.34 -7.85 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241002271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.659 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds