Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38163 * 119.91551 * 2 1 4 4 C 1.38002 * 120.28267 * 180.27870 * 3 2 1 5 5 C 1.39714 * 120.09374 * 359.76410 * 4 3 2 6 6 C 1.47736 * 120.08849 * 179.97438 * 5 4 3 7 7 O 1.21475 * 119.99686 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00549 * 0.02562 * 6 5 4 9 9 C 1.39410 * 119.81787 * 359.97438 * 5 4 3 10 10 C 1.39102 * 119.72408 * 0.02562 * 9 5 4 11 11 C 1.48403 * 120.04971 * 179.97438 * 10 9 5 12 12 C 1.40030 * 120.82033 * 129.99902 * 11 10 9 13 13 C 1.38503 * 119.42527 * 180.02562 * 12 11 10 14 14 N 1.31485 * 121.14283 * 0.02562 * 13 12 11 15 15 C 1.33643 * 121.79225 * 359.97438 * 14 13 12 16 16 C 1.41421 * 119.77653 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99993 * 188.93971 * 16 15 14 18 18 C 1.40037 * 120.00177 * 8.93790 * 16 15 14 19 19 N 1.30734 * 119.99843 * 195.79551 * 18 16 15 20 20 Si 1.86802 * 119.99738 * 15.79997 * 18 16 15 21 21 H 1.48497 * 109.46811 * 269.99625 * 20 18 16 22 22 H 1.48501 * 109.47379 * 29.99772 * 20 18 16 23 23 H 1.48501 * 109.47040 * 150.00080 * 20 18 16 24 24 C 1.39298 * 120.81927 * 310.30797 * 11 10 9 25 25 H 1.08997 * 109.47672 * 270.23400 * 1 2 3 26 26 H 1.09003 * 109.46675 * 30.23494 * 1 2 3 27 27 H 1.09000 * 109.47290 * 150.22624 * 1 2 3 28 28 H 1.08007 * 119.85740 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.95608 * 179.75129 * 4 3 2 30 30 H 0.96703 * 117.00224 * 180.02562 * 8 6 5 31 31 H 1.07999 * 120.14053 * 180.02562 * 9 5 4 32 32 H 1.07999 * 120.28359 * 0.02562 * 12 11 10 33 33 H 1.07997 * 119.43208 * 180.02562 * 13 12 11 34 34 H 0.96995 * 120.00461 * 354.80134 * 19 18 16 35 35 H 1.07998 * 120.58574 * 359.95752 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1975 0.0000 4 6 3.5760 1.2064 -0.0058 5 6 4.2843 0.0021 -0.0067 6 6 5.7616 0.0117 -0.0135 7 8 6.3758 -1.0364 -0.0148 8 8 6.4277 1.1826 -0.0183 9 6 3.5932 -1.2086 -0.0012 10 6 2.2022 -1.2087 0.0046 11 6 1.4591 -2.4933 0.0099 12 6 0.4347 -2.7257 0.9358 13 6 -0.2396 -3.9354 0.9152 14 7 0.0659 -4.8694 0.0416 15 6 1.0348 -4.6978 -0.8628 16 6 1.3283 -5.7314 -1.7823 17 1 2.1992 -5.6584 -2.4169 18 6 0.4898 -6.8495 -1.8701 19 7 0.9046 -7.9318 -2.4749 20 14 -1.2215 -6.7945 -1.1230 21 1 -1.1616 -7.2599 0.2858 22 1 -1.7345 -5.4015 -1.1629 23 1 -2.1286 -7.6785 -1.8982 24 6 1.7678 -3.5001 -0.9020 25 1 -0.3634 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5175 27 1 -0.3634 -0.8920 -0.5103 28 1 1.6523 2.1308 0.0004 29 1 4.1093 2.1456 -0.0098 30 1 7.3937 1.1382 -0.0230 31 1 4.1354 -2.1426 -0.0015 32 1 0.1726 -1.9683 1.6597 33 1 -1.0300 -4.1146 1.6289 34 1 1.7622 -7.9358 -2.9280 35 1 2.5541 -3.3607 -1.6291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241003225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = -60.703914 kcal Electronic energy + Delta-G solvation = -20858.829183 eV Core-core repulsion = 17592.286817 eV Total energy + Delta-G solvation = -3266.542366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49650 -39.35666 -38.11680 -36.18031 -34.07442 -33.21319 -32.33755 -30.43729 -29.31387 -27.76807 -25.48330 -23.80154 -23.18725 -21.44071 -21.30882 -20.21673 -18.54573 -17.88490 -17.18463 -15.70436 -15.62480 -15.43700 -15.19441 -14.88060 -14.61953 -14.05706 -13.72914 -13.60143 -13.34810 -12.69777 -12.68558 -12.37373 -12.22635 -12.05581 -12.03433 -11.61758 -11.59113 -11.11004 -10.77129 -10.70641 -10.68096 -10.03796 -9.79353 -9.24233 -9.16681 -8.84986 -8.15231 -8.03609 -7.83032 -7.31356 -4.82036 0.66277 1.25371 2.32417 2.49525 2.66194 2.92426 3.53010 3.60399 3.78986 3.92236 4.35769 4.52387 4.74118 4.84312 4.88198 5.10909 5.19990 5.35806 5.48064 5.65069 5.68220 5.71576 5.82772 5.94371 6.15975 6.16840 6.25124 6.27899 6.35379 6.43604 6.47698 6.63068 6.82199 6.92945 7.17972 7.32771 7.40884 7.59345 7.79376 8.02943 8.23133 8.58211 9.45202 9.93611 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.004607 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.891748 B = 6075.598073 C = 7048.652308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 C -0.138 4.138 4 C -0.066 4.066 5 C -0.140 4.140 6 C 0.528 3.472 7 O -0.513 6.513 8 O -0.515 6.515 9 C -0.037 4.037 10 C -0.038 4.038 11 C 0.011 3.989 12 C -0.300 4.300 13 C 0.148 3.852 14 N -0.569 5.569 15 C 0.250 3.750 16 C -0.475 4.475 17 H 0.082 0.918 18 C 0.048 3.952 19 N -0.799 5.799 20 Si 1.145 2.855 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.327 1.327 24 C -0.239 4.239 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.412 0.588 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.285 0.715 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 17.493 4.419 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.034 4.034 3 C -0.156 4.156 4 C -0.085 4.085 5 C -0.141 4.141 6 C 0.373 3.627 7 O -0.402 6.402 8 O -0.327 6.327 9 C -0.056 4.056 10 C -0.038 4.038 11 C 0.005 3.995 12 C -0.323 4.323 13 C -0.013 4.013 14 N -0.288 5.288 15 C 0.128 3.872 16 C -0.506 4.506 17 H 0.100 0.900 18 C -0.174 4.174 19 N -0.420 5.420 20 Si 0.977 3.023 21 H -0.211 1.211 22 H -0.207 1.207 23 H -0.259 1.259 24 C -0.262 4.262 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.270 0.730 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.917 15.465 4.592 16.159 hybrid contribution 2.939 1.712 -0.350 3.420 sum 3.856 17.178 4.242 18.109 Atomic orbital electron populations 1.20997 0.90402 1.03439 1.02834 1.20316 0.96822 0.91950 0.94273 1.20934 0.93738 0.97670 1.03281 1.21354 0.94189 0.97103 0.95820 1.18868 0.88562 0.94971 1.11710 1.20970 0.88967 0.80817 0.71990 1.90909 1.69803 1.33309 1.46204 1.84552 1.26791 1.35213 1.86119 1.21400 0.93316 0.97250 0.93608 1.18840 0.92016 0.93077 0.99832 1.18517 0.94538 0.90862 0.95548 1.21149 1.04677 1.00474 1.06006 1.22059 0.95906 0.89155 0.94225 1.66774 1.20777 1.32447 1.08757 1.18488 0.87373 0.91057 0.90313 1.20764 1.10084 1.02703 1.17082 0.89989 1.27753 1.06708 0.89821 0.93119 1.70610 1.22053 1.26860 1.22475 0.82104 0.70388 0.74921 0.74863 1.21106 1.20684 1.25946 1.21732 1.05923 0.95024 1.03503 0.90494 0.91808 0.89858 0.85203 0.84768 0.73004 0.84306 0.87639 0.85382 0.90391 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.47 36.01 0.31 -1.20 16 2 C -0.03 -0.47 5.89 -104.20 -0.61 -1.08 16 3 C -0.14 -1.61 9.67 -39.70 -0.38 -2.00 16 4 C -0.07 -0.79 9.61 -39.12 -0.38 -1.16 16 5 C -0.14 -2.01 5.87 -105.03 -0.62 -2.62 16 6 C 0.53 7.28 8.27 34.61 0.29 7.57 16 7 O -0.51 -8.73 17.13 -19.25 -0.33 -9.06 16 8 O -0.51 -4.98 12.67 -40.52 -0.51 -5.49 16 9 C -0.04 -0.62 9.08 -38.82 -0.35 -0.98 16 10 C -0.04 -0.64 5.51 -104.94 -0.58 -1.22 16 11 C 0.01 0.22 4.71 -104.65 -0.49 -0.27 16 12 C -0.30 -5.78 8.03 -38.81 -0.31 -6.09 16 13 C 0.15 3.11 11.17 -17.60 -0.20 2.92 16 14 N -0.57 -14.09 5.02 -11.21 -0.06 -14.15 16 15 C 0.25 6.42 6.27 -85.02 -0.53 5.89 16 16 C -0.48 -12.84 9.51 -37.70 -0.36 -13.20 16 17 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 18 C 0.05 1.30 5.51 -17.34 -0.10 1.21 16 19 N -0.80 -21.62 13.65 55.55 0.76 -20.86 16 20 Si 1.14 27.51 25.94 -169.99 -4.41 23.10 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.68 6.54 56.52 0.37 -6.31 16 23 H -0.33 -7.70 7.11 56.52 0.40 -7.30 16 24 C -0.24 -5.52 9.35 -38.34 -0.36 -5.88 16 25 H 0.08 0.87 7.54 -51.93 -0.39 0.47 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.08 1.24 6.45 -51.93 -0.33 0.91 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 29 H 0.13 1.26 7.60 -52.49 -0.40 0.86 16 30 H 0.41 2.08 9.11 45.56 0.42 2.49 16 31 H 0.14 2.50 7.64 -52.49 -0.40 2.10 16 32 H 0.11 1.74 6.94 -52.49 -0.36 1.38 16 33 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.28 7.39 8.73 -40.82 -0.36 7.04 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -30.81 306.40 -7.38 -38.19 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.77 Total: 1.77 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -4.68 Total: -18.12 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.70 Total: -35.01 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.84 Total: -14.55 kcal Atomic # 14 Polarization: 27.51 SS G_CDS: -4.41 Total: 23.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.81 -7.38 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241003225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.513 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds