Wall clock time and date at job start Tue Mar 31 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38059 * 119.92790 * 2 1 4 4 C 1.38085 * 120.31599 * 180.27377 * 3 2 1 5 5 C 1.39772 * 120.15164 * 359.97438 * 4 3 2 6 6 C 1.47749 * 120.07525 * 180.02562 * 5 4 3 7 7 O 1.21472 * 119.99912 * 179.97438 * 6 5 4 8 8 O 1.34708 * 120.00337 * 359.97438 * 6 5 4 9 9 C 1.39320 * 119.84733 * 0.02562 * 5 4 3 10 10 C 1.39434 * 119.69202 * 359.97438 * 9 5 4 11 11 C 1.47874 * 120.07614 * 179.97438 * 10 9 5 12 12 C 1.39290 * 120.78201 * 65.02819 * 11 10 9 13 13 N 1.31683 * 120.66486 * 179.97438 * 12 11 10 14 14 C 1.32196 * 122.50050 * 0.02562 * 13 12 11 15 15 C 1.36495 * 121.50525 * 0.02562 * 14 13 12 16 16 C 1.41117 * 119.10614 * 359.68244 * 15 14 13 17 17 C 1.40932 * 121.10963 * 180.31731 * 16 15 14 18 18 H 1.07997 * 120.00080 * 204.26744 * 17 16 15 19 19 C 1.40179 * 120.00076 * 24.26815 * 17 16 15 20 20 N 1.30683 * 120.00021 * 14.07990 * 19 17 16 21 21 Si 1.86801 * 120.00338 * 194.08379 * 19 17 16 22 22 H 1.48499 * 109.46799 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47377 * 119.99552 * 21 19 17 24 24 H 1.48503 * 109.47107 * 240.00088 * 21 19 17 25 25 H 1.09001 * 109.47317 * 269.72823 * 1 2 3 26 26 H 1.09002 * 109.47030 * 29.72291 * 1 2 3 27 27 H 1.08997 * 109.47177 * 149.72566 * 1 2 3 28 28 H 1.08000 * 119.84392 * 0.27509 * 3 2 1 29 29 H 1.08000 * 119.92713 * 179.97438 * 4 3 2 30 30 H 0.96700 * 117.00315 * 180.02562 * 8 6 5 31 31 H 1.08004 * 120.15849 * 180.02562 * 9 5 4 32 32 H 1.08001 * 119.67120 * 0.02562 * 12 11 10 33 33 H 1.08006 * 119.24718 * 180.02562 * 14 13 12 34 34 H 1.08006 * 120.44561 * 179.97438 * 15 14 13 35 35 H 0.97006 * 120.00097 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1965 0.0000 4 6 3.5766 1.2059 -0.0057 5 6 4.2868 0.0020 -0.0110 6 6 5.7643 0.0140 -0.0165 7 8 6.3801 -1.0330 -0.0206 8 8 6.4284 1.1860 -0.0170 9 6 3.5984 -1.2092 -0.0110 10 6 2.2041 -1.2111 -0.0052 11 6 1.4648 -2.4918 -0.0058 12 6 1.5504 -3.3648 1.0762 13 7 0.8906 -4.5044 1.0735 14 6 0.1243 -4.8791 0.0636 15 6 -0.0273 -4.0975 -1.0451 16 6 0.6455 -2.8586 -1.1088 17 6 0.5138 -2.0153 -2.2302 18 1 1.2877 -1.2981 -2.4604 19 6 -0.6218 -2.1074 -3.0469 20 7 -1.6735 -2.7628 -2.6322 21 14 -0.6317 -1.2933 -4.7282 22 1 0.6708 -0.6185 -4.9590 23 1 -0.8486 -2.3232 -5.7757 24 1 -1.7253 -0.2903 -4.7860 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3633 0.8925 -0.5095 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6521 2.1296 0.0045 29 1 4.1091 2.1455 -0.0061 30 1 7.3944 1.1432 -0.0210 31 1 4.1421 -2.1424 -0.0146 32 1 2.1634 -3.1041 1.9263 33 1 -0.3937 -5.8253 0.1170 34 1 -0.6575 -4.4206 -1.8606 35 1 -2.4592 -2.8269 -3.1975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241003272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:22 Heat of formation + Delta-G solvation = -52.318826 kcal Electronic energy + Delta-G solvation = -21476.738933 eV Core-core repulsion = 18210.560172 eV Total energy + Delta-G solvation = -3266.178761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18231 -39.05834 -37.71244 -35.94535 -34.40527 -32.76622 -31.71129 -30.32324 -28.55902 -27.31194 -25.94294 -23.23649 -22.72102 -21.59660 -20.89566 -19.89547 -17.85164 -17.64868 -16.98884 -15.72514 -15.43948 -14.97372 -14.83206 -14.64616 -14.45128 -14.17440 -13.40158 -13.04006 -12.95120 -12.79035 -12.40801 -12.31569 -11.67647 -11.62525 -11.48245 -11.38285 -11.33340 -11.16202 -11.04913 -10.72849 -10.42176 -10.34691 -9.87194 -9.50795 -8.60270 -8.38393 -8.09835 -7.88869 -7.53546 -6.98924 -4.75649 1.08606 1.76003 2.54793 2.69870 2.88220 2.94010 2.99553 3.13512 3.19561 3.73067 4.20215 4.50122 5.14418 5.30539 5.32849 5.50012 5.60089 5.68031 5.80389 5.89160 6.18062 6.23797 6.25592 6.36537 6.50766 6.52294 6.65723 6.70786 6.77549 6.84314 6.95830 7.04071 7.22354 7.27205 7.37598 7.41997 7.73695 7.95253 8.04047 8.31086 8.55573 8.58756 9.53280 9.86508 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.006430 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.717055 B = 4353.398856 C = 5268.997775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.020 4.020 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.146 4.146 6 C 0.529 3.471 7 O -0.521 6.521 8 O -0.516 6.516 9 C -0.052 4.052 10 C 0.009 3.991 11 C -0.236 4.236 12 C 0.130 3.870 13 N -0.576 5.576 14 C 0.082 3.918 15 C -0.209 4.209 16 C 0.145 3.855 17 C -0.436 4.436 18 H 0.085 0.915 19 C 0.078 3.922 20 N -0.777 5.777 21 Si 0.907 3.093 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.271 1.271 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.408 0.592 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 8.179 0.834 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.020 4.020 3 C -0.162 4.162 4 C -0.095 4.095 5 C -0.147 4.147 6 C 0.375 3.625 7 O -0.411 6.411 8 O -0.328 6.328 9 C -0.070 4.070 10 C 0.008 3.992 11 C -0.241 4.241 12 C -0.028 4.028 13 N -0.290 5.290 14 C -0.066 4.066 15 C -0.231 4.231 16 C 0.137 3.863 17 C -0.466 4.466 18 H 0.103 0.897 19 C -0.143 4.143 20 N -0.402 5.402 21 Si 0.731 3.269 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.196 1.196 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.266 0.734 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.210 7.241 1.480 8.506 hybrid contribution 0.510 0.941 -1.576 1.906 sum 4.720 8.183 -0.097 9.447 Atomic orbital electron populations 1.21167 0.90578 1.05319 1.01769 1.20438 0.96907 0.91853 0.92825 1.20919 0.93634 0.97764 1.03847 1.21244 0.94152 0.96756 0.97356 1.18798 0.87980 0.95191 1.12770 1.21121 0.89175 0.80593 0.71637 1.90867 1.69827 1.33468 1.46891 1.84581 1.26496 1.35468 1.86213 1.21459 0.93681 0.96509 0.95356 1.18486 0.90992 0.92929 0.96819 1.19377 1.10580 0.96021 0.98147 1.22065 0.95684 0.89607 0.95444 1.67327 1.13359 1.18297 1.30037 1.21749 0.95810 0.98342 0.90669 1.21995 1.05697 0.95324 1.00049 1.17685 0.87574 0.90848 0.90190 1.19577 1.03679 1.16753 1.06606 0.89741 1.26012 0.94588 0.94034 0.99669 1.69728 1.02772 1.31236 1.36441 0.86242 0.79854 0.79723 0.81100 1.18051 1.19414 1.19583 0.92111 0.92618 0.86804 0.85879 0.85451 0.73440 0.85075 0.86179 0.86411 0.85206 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.28 36.01 0.33 -2.08 16 2 C -0.02 -0.37 5.39 -104.13 -0.56 -0.93 16 3 C -0.14 -2.23 9.66 -39.70 -0.38 -2.61 16 4 C -0.08 -1.15 9.61 -39.06 -0.38 -1.53 16 5 C -0.15 -2.47 5.87 -105.03 -0.62 -3.08 16 6 C 0.53 8.32 8.27 34.62 0.29 8.61 16 7 O -0.52 -9.60 17.13 -19.24 -0.33 -9.93 16 8 O -0.52 -5.99 12.67 -40.51 -0.51 -6.50 16 9 C -0.05 -0.98 9.30 -38.73 -0.36 -1.34 16 10 C 0.01 0.17 4.48 -104.95 -0.47 -0.30 16 11 C -0.24 -5.31 4.67 -104.04 -0.49 -5.79 16 12 C 0.13 2.93 10.92 -17.22 -0.19 2.74 16 13 N -0.58 -13.59 10.32 -13.37 -0.14 -13.72 16 14 C 0.08 1.90 11.09 -18.02 -0.20 1.70 16 15 C -0.21 -5.03 8.73 -39.12 -0.34 -5.37 16 16 C 0.14 3.49 4.57 -106.26 -0.49 3.00 16 17 C -0.44 -10.23 6.28 -37.83 -0.24 -10.47 16 18 H 0.08 2.00 7.15 -52.49 -0.38 1.63 16 19 C 0.08 1.74 5.25 -17.31 -0.09 1.64 16 20 N -0.78 -17.74 10.79 55.56 0.60 -17.14 16 21 Si 0.91 17.11 29.58 -169.99 -5.03 12.08 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.11 2.48 4.27 -51.93 -0.22 2.25 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.13 1.59 7.60 -52.49 -0.40 1.19 16 30 H 0.41 2.74 9.11 45.56 0.42 3.15 16 31 H 0.13 2.57 7.64 -52.48 -0.40 2.17 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 34 H 0.13 3.17 6.12 -52.48 -0.32 2.85 16 35 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -27.60 305.78 -7.53 -35.12 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -2.55 Total: 11.29 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -4.18 Total: -15.81 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.46 Total: -30.86 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.84 Total: -16.43 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.60 -7.53 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241003272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.197 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds