Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48493 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47329 * 300.00390 * 3 2 1 6 6 H 1.48503 * 109.46961 * 60.00108 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99867 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.38319 * 119.87776 * 89.99465 * 10 9 7 12 12 C 1.38022 * 120.12013 * 179.97438 * 11 10 9 13 13 C 1.39325 * 119.88100 * 0.02742 * 12 11 10 14 14 C 1.48407 * 120.12311 * 179.97438 * 13 12 11 15 15 C 1.39457 * 120.46400 * 0.02562 * 14 13 12 16 16 N 1.31785 * 120.92022 * 179.97438 * 15 14 13 17 17 C 1.31710 * 122.02493 * 359.74589 * 16 15 14 18 18 C 1.39630 * 120.82260 * 0.54455 * 17 16 15 19 19 C 1.47746 * 120.50930 * 179.71907 * 18 17 16 20 20 O 1.21462 * 120.00102 * 179.72427 * 19 18 17 21 21 O 1.34705 * 119.99597 * 359.72260 * 19 18 17 22 22 C 1.39457 * 120.46794 * 179.97438 * 14 13 12 23 23 C 1.39330 * 119.75773 * 0.27188 * 13 12 11 24 24 C 1.38022 * 119.87700 * 359.42706 * 23 13 12 25 25 H 0.96998 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47572 * 60.00088 * 9 7 2 27 27 H 1.08994 * 109.47471 * 299.99481 * 9 7 2 28 28 H 1.08002 * 119.94372 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.05706 * 180.02562 * 12 11 10 30 30 H 1.07992 * 119.53875 * 359.97438 * 15 14 13 31 31 H 1.08004 * 119.59284 * 180.27070 * 17 16 15 32 32 H 0.96702 * 116.99836 * 179.97438 * 21 19 18 33 33 H 1.07994 * 120.91304 * 0.02562 * 22 14 13 34 34 H 1.08002 * 120.05725 * 179.72654 * 23 13 12 35 35 H 1.07997 * 119.93997 * 180.27186 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.6782 -4.1693 1.1962 12 6 3.5746 -5.2187 1.2011 13 6 4.0290 -5.7492 -0.0045 14 6 4.9933 -6.8772 -0.0055 15 6 5.4524 -7.4160 1.1961 16 7 6.3084 -8.4180 1.2057 17 6 6.7642 -8.9579 0.0941 18 6 6.3614 -8.4759 -1.1529 19 6 6.8818 -9.0827 -2.3954 20 8 6.5213 -8.6594 -3.4753 21 8 7.7561 -10.1055 -2.3305 22 6 5.4524 -7.4140 -1.2080 23 6 3.5794 -5.2127 -1.2092 24 6 2.6781 -4.1674 -1.2025 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.3257 -3.7571 2.1302 29 1 3.9233 -5.6280 2.1378 30 1 5.1016 -7.0064 2.1317 31 1 7.4615 -9.7809 0.1478 32 1 8.0683 -10.4700 -3.1700 33 1 5.1162 -7.0200 -2.1556 34 1 3.9318 -5.6172 -2.1465 35 1 2.3256 -3.7536 -2.1357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241802247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -43.267183 kcal Electronic energy + Delta-G solvation = -20056.987999 eV Core-core repulsion = 16791.201747 eV Total energy + Delta-G solvation = -3265.786252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02824 -39.85356 -38.54615 -36.47124 -34.23267 -32.91715 -32.47511 -30.53473 -30.24542 -26.98562 -25.64044 -24.25025 -23.02983 -22.10116 -21.27848 -20.26221 -18.53325 -17.93459 -16.95788 -16.42104 -16.34313 -16.02296 -15.75257 -14.86515 -14.34401 -14.24776 -14.15516 -13.85761 -13.61819 -13.10633 -12.78802 -12.73534 -12.33274 -12.05454 -11.95894 -11.41697 -11.36708 -11.11844 -10.84012 -10.61176 -10.38594 -10.30409 -9.86853 -9.76225 -9.59739 -9.33370 -8.51871 -8.48415 -7.67048 -6.11796 -4.16451 0.17246 0.68292 1.88143 1.96822 2.33098 2.57775 3.25060 3.33096 3.37767 3.55937 4.09203 4.29932 4.39139 4.45816 4.51429 4.61365 4.76866 4.93453 5.19730 5.22912 5.35760 5.44792 5.66468 5.73389 5.83101 6.02305 6.05128 6.12188 6.23197 6.43598 6.51318 6.84944 6.99004 7.02924 7.38327 7.46872 7.52999 7.60986 7.70933 7.83652 8.21516 8.89036 9.48147 10.97937 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.003088 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.402685 B = 9063.914356 C = 9447.961380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.016 4.016 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.094 4.094 14 C -0.073 4.073 15 C 0.132 3.868 16 N -0.485 5.485 17 C 0.142 3.858 18 C -0.178 4.178 19 C 0.534 3.466 20 O -0.509 6.509 21 O -0.511 6.511 22 C -0.016 4.016 23 C -0.102 4.102 24 C -0.123 4.123 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.416 0.584 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.182 -18.267 -0.939 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.007 3.993 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.119 4.119 13 C -0.095 4.095 14 C -0.075 4.075 15 C -0.024 4.024 16 N -0.192 5.192 17 C -0.016 4.016 18 C -0.181 4.181 19 C 0.378 3.622 20 O -0.398 6.398 21 O -0.323 6.323 22 C -0.041 4.041 23 C -0.120 4.120 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.275 0.725 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.081 -18.204 -0.056 21.848 hybrid contribution 0.363 1.100 -1.454 1.860 sum 12.444 -17.104 -1.510 21.206 Atomic orbital electron populations 1.69961 1.06053 1.26865 1.50269 1.25014 0.94898 0.99336 0.95035 0.86465 0.80134 0.83353 0.77699 1.19631 1.20877 1.20876 1.21060 0.93092 0.89690 1.51338 0.92338 1.18438 0.92612 0.89602 0.98680 1.20892 0.94778 0.94023 0.91890 1.21065 0.98095 0.96283 0.98698 1.21062 0.97693 0.96919 0.96252 1.18246 0.99899 0.97039 0.94334 1.19830 0.97690 0.96720 0.93277 1.23278 0.90679 0.90405 0.98084 1.67752 1.10807 1.10107 1.30566 1.23151 0.95343 0.96834 0.86233 1.19978 1.04140 1.01323 0.92648 1.20630 0.75712 0.77023 0.88862 1.90917 1.57150 1.61187 1.30534 1.84532 1.57994 1.47746 1.42050 1.21831 0.91299 0.91418 0.99591 1.21110 0.97559 0.96867 0.96457 1.21070 0.98008 0.96324 0.98723 0.92786 0.95083 0.95044 0.85784 0.86447 0.81575 0.81370 0.72450 0.83085 0.86602 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.92 9.09 -34.44 -0.31 -14.23 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.07 5.10 -29.04 -0.15 0.92 16 10 C -0.02 -0.32 5.07 -104.56 -0.53 -0.85 16 11 C -0.12 -2.20 9.68 -39.63 -0.38 -2.58 16 12 C -0.10 -1.51 9.44 -39.26 -0.37 -1.88 16 13 C -0.09 -1.39 5.88 -104.90 -0.62 -2.01 16 14 C -0.07 -0.93 5.89 -104.80 -0.62 -1.55 16 15 C 0.13 1.53 10.59 -17.12 -0.18 1.35 16 16 N -0.48 -5.64 10.33 -12.63 -0.13 -5.77 16 17 C 0.14 1.45 10.78 -17.08 -0.18 1.27 16 18 C -0.18 -1.95 5.89 -104.87 -0.62 -2.57 16 19 C 0.53 5.52 8.28 34.62 0.29 5.80 16 20 O -0.51 -6.74 17.20 -19.24 -0.33 -7.07 16 21 O -0.51 -3.42 12.70 -40.50 -0.51 -3.93 16 22 C -0.02 -0.20 9.07 -38.51 -0.35 -0.55 16 23 C -0.10 -1.59 9.44 -39.25 -0.37 -1.96 16 24 C -0.12 -2.25 9.68 -39.63 -0.38 -2.64 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.12 1.36 6.23 -52.48 -0.33 1.03 16 30 H 0.17 1.59 6.21 -52.49 -0.33 1.27 16 31 H 0.17 1.28 7.61 -52.48 -0.40 0.89 16 32 H 0.42 0.92 9.11 45.56 0.42 1.34 16 33 H 0.15 1.80 5.99 -52.49 -0.31 1.48 16 34 H 0.12 1.54 6.27 -52.49 -0.33 1.21 16 35 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -31.89 313.46 -7.92 -39.81 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.51 Total: 1.14 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -4.88 Total: -19.95 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.61 Total: -30.79 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.85 Total: -11.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.89 -7.92 -39.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241802247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.458 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds