Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86791 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47005 * 90.00160 * 3 2 1 5 5 H 1.48501 * 109.47540 * 210.00207 * 3 2 1 6 6 H 1.48503 * 109.47219 * 330.00548 * 3 2 1 7 7 C 1.38647 * 119.99862 * 179.73187 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.35723 * 116.99967 * 174.92943 * 9 7 2 11 11 C 1.39441 * 120.38146 * 5.18073 * 10 9 7 12 12 C 1.38192 * 118.46198 * 179.77928 * 11 10 9 13 13 C 1.39485 * 119.14196 * 0.48091 * 12 11 10 14 14 C 1.48190 * 119.65526 * 179.74345 * 13 12 11 15 15 C 1.39198 * 120.01606 * 0.02562 * 14 13 12 16 16 C 1.37963 * 120.20575 * 180.02562 * 15 14 13 17 17 C 1.38518 * 119.91844 * 0.22793 * 16 15 14 18 18 C 1.37770 * 120.25520 * 359.92717 * 17 16 15 19 19 C 1.38768 * 120.85519 * 359.39877 * 18 17 16 20 20 O 1.36034 * 111.29456 * 180.81314 * 19 18 17 21 21 C 1.43781 * 109.30812 * 341.30144 * 20 19 18 22 22 C 1.51668 * 132.11721 * 179.43795 * 18 17 16 23 23 N 1.32716 * 120.68530 * 359.76418 * 13 12 11 24 24 C 1.31680 * 121.67843 * 359.97438 * 23 13 12 25 25 H 0.97000 * 120.00004 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.76601 * 0.02811 * 11 10 9 27 27 H 1.08004 * 120.42902 * 180.21646 * 12 11 10 28 28 H 1.07997 * 119.89945 * 0.02623 * 15 14 13 29 29 H 1.07998 * 120.04309 * 180.24243 * 16 15 14 30 30 H 1.08006 * 119.87354 * 179.91507 * 17 16 15 31 31 H 1.08999 * 110.75659 * 269.20733 * 21 20 19 32 32 H 1.08996 * 110.91255 * 145.91423 * 21 20 19 33 33 H 1.08997 * 110.94029 * 313.65109 * 22 18 17 34 34 H 1.09000 * 110.93970 * 77.30216 * 22 18 17 35 35 H 1.07997 * 119.60660 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 1.4001 5 1 3.5472 1.4402 -0.7001 6 1 1.4470 2.6527 -0.6999 7 6 2.0089 -1.2007 0.0056 8 1 3.0889 -1.2007 0.0060 9 8 1.3348 -2.3682 0.0116 10 6 2.0698 -3.5046 -0.0900 11 6 3.4630 -3.4461 -0.0862 12 6 4.1721 -4.6279 -0.1871 13 6 3.4750 -5.8309 -0.2989 14 6 4.2240 -7.1044 -0.4135 15 6 5.6160 -7.0965 -0.4088 16 6 6.3172 -8.2797 -0.5158 17 6 5.6345 -9.4793 -0.6330 18 6 4.2569 -9.4959 -0.6418 19 6 3.5302 -8.3199 -0.5215 20 8 2.1918 -8.5627 -0.5358 21 6 1.9505 -9.8636 -1.0985 22 6 3.2542 -10.6271 -0.7653 23 7 2.1480 -5.8467 -0.3040 24 6 1.4428 -4.7391 -0.2044 25 1 -0.4850 -0.8400 -0.0004 26 1 3.9760 -2.4994 -0.0023 27 1 5.2521 -4.6198 -0.1838 28 1 6.1487 -6.1611 -0.3211 29 1 7.3972 -8.2709 -0.5079 30 1 6.1842 -10.4051 -0.7182 31 1 1.8066 -9.7973 -2.1770 32 1 1.0922 -10.3395 -0.6244 33 1 3.5275 -11.3032 -1.5753 34 1 3.1595 -11.1683 0.1761 35 1 0.3641 -4.7909 -0.2126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242009014.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -0.176082 kcal Electronic energy + Delta-G solvation = -20822.155973 eV Core-core repulsion = 17558.238291 eV Total energy + Delta-G solvation = -3263.917682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95058 -39.57982 -37.66636 -36.89042 -33.05230 -32.39689 -31.45533 -30.70340 -29.20342 -28.02750 -25.25222 -23.67590 -23.06305 -22.59944 -21.43282 -20.60631 -18.58141 -17.49522 -16.99772 -16.34282 -16.23534 -15.86805 -15.35765 -14.85124 -14.20629 -14.00818 -13.90957 -13.59983 -13.30782 -13.14929 -12.99067 -12.83218 -12.57058 -12.07757 -11.96135 -11.67557 -11.46066 -10.99934 -10.84130 -10.73507 -10.64844 -10.40210 -9.91488 -9.23278 -9.06830 -8.73625 -8.69262 -8.11301 -7.16088 -6.95214 -4.21507 1.04797 1.44958 2.00943 2.33748 3.15914 3.21966 3.35261 3.45680 3.81445 3.97690 4.40061 4.55912 4.64938 4.68365 4.87401 4.96093 4.99229 5.06370 5.22242 5.36901 5.38545 5.42185 5.48896 5.65155 5.69152 5.76138 5.85086 6.00302 6.09998 6.36031 6.41864 6.51141 6.57509 6.71707 6.89208 6.94998 7.29305 7.34805 7.44946 8.19919 8.68606 8.77079 9.37168 10.48352 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.033882 B = 0.003665 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.196999 B = 7637.025761 C = 8427.185109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.013 3.987 3 Si 1.100 2.900 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.472 4.472 8 H 0.087 0.913 9 O -0.185 6.185 10 C 0.109 3.891 11 C -0.198 4.198 12 C -0.103 4.103 13 C 0.043 3.957 14 C -0.026 4.026 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.082 4.082 18 C -0.184 4.184 19 C 0.132 3.868 20 O -0.270 6.270 21 C 0.045 3.955 22 C -0.107 4.107 23 N -0.414 5.414 24 C 0.031 3.969 25 H 0.285 0.715 26 H 0.139 0.861 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -16.338 -1.803 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.194 4.194 3 Si 0.923 3.077 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.104 0.896 9 O -0.087 6.087 10 C 0.052 3.948 11 C -0.224 4.224 12 C -0.123 4.123 13 C -0.091 4.091 14 C -0.027 4.027 15 C -0.107 4.107 16 C -0.167 4.167 17 C -0.100 4.100 18 C -0.185 4.185 19 C 0.085 3.915 20 O -0.182 6.182 21 C -0.031 4.031 22 C -0.144 4.144 23 N -0.123 5.123 24 C -0.133 4.133 25 H 0.095 0.905 26 H 0.156 0.844 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.793 -15.227 -1.787 17.674 hybrid contribution 0.851 -1.035 0.056 1.341 sum 9.644 -16.262 -1.731 18.986 Atomic orbital electron populations 1.70546 1.06619 1.32017 1.40804 1.26661 0.96789 1.01276 0.94655 0.83042 0.74233 0.72832 0.77601 1.20484 1.20650 1.19839 1.22342 0.93331 0.82036 1.57016 0.89569 1.83649 1.35517 1.12178 1.77319 1.20437 0.91058 0.88713 0.94590 1.21453 0.93804 0.98978 1.08190 1.21703 0.99825 0.92101 0.98634 1.19024 0.89523 0.91178 1.09373 1.17847 0.91674 0.88943 1.04268 1.20925 0.91678 0.98775 0.99294 1.20835 0.99599 0.91888 1.04367 1.20217 0.91808 0.98123 0.99886 1.20751 0.94696 0.94290 1.08798 1.19463 0.83493 0.92946 0.95607 1.87080 1.19715 1.34570 1.76860 1.23826 0.98030 0.81994 0.99244 1.21766 0.92897 0.96782 1.03006 1.67515 1.06921 1.29199 1.08652 1.21770 0.99676 0.85262 1.06566 0.90453 0.84362 0.85983 0.85041 0.85608 0.86273 0.90918 0.87953 0.89521 0.89530 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.70 55.48 0.76 -24.38 16 2 C 0.01 0.36 5.49 -17.51 -0.10 0.26 16 3 Si 1.10 22.82 29.92 -169.99 -5.09 17.73 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.82 9.49 30.88 0.29 -12.53 16 8 H 0.09 2.19 5.25 -52.49 -0.28 1.91 16 9 O -0.19 -5.07 9.17 0.18 0.00 -5.07 16 10 C 0.11 2.63 6.67 -38.88 -0.26 2.37 16 11 C -0.20 -4.31 9.25 -39.15 -0.36 -4.67 16 12 C -0.10 -1.96 9.45 -39.13 -0.37 -2.33 16 13 C 0.04 0.87 6.73 -82.93 -0.56 0.32 16 14 C -0.03 -0.45 5.90 -104.65 -0.62 -1.07 16 15 C -0.09 -1.22 9.39 -39.33 -0.37 -1.59 16 16 C -0.15 -1.74 10.05 -39.58 -0.40 -2.14 16 17 C -0.08 -0.95 10.02 -39.65 -0.40 -1.35 16 18 C -0.18 -2.46 6.27 -104.12 -0.65 -3.11 16 19 C 0.13 2.20 6.72 -38.58 -0.26 1.95 16 20 O -0.27 -4.59 9.93 -19.85 -0.20 -4.78 16 21 C 0.04 0.51 8.01 38.06 0.30 0.81 16 22 C -0.11 -1.08 7.12 -26.51 -0.19 -1.27 16 23 N -0.41 -9.05 8.86 -9.62 -0.09 -9.14 16 24 C 0.03 0.70 11.14 -17.36 -0.19 0.51 16 25 H 0.29 8.42 7.97 -40.82 -0.33 8.09 16 26 H 0.14 2.92 5.75 -52.49 -0.30 2.62 16 27 H 0.12 1.86 6.17 -52.48 -0.32 1.54 16 28 H 0.13 1.58 6.14 -52.49 -0.32 1.26 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.15 3.12 8.06 -52.49 -0.42 2.70 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -31.97 302.60 -7.47 -39.44 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.30 Total: 5.49 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -4.12 Total: -23.84 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.67 Total: -33.52 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.20 Total: -9.86 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.09 Total: 17.73 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.97 -7.47 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242009014.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.262 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds