Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86807 * 119.99782 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46996 * 300.00166 * 3 2 1 6 6 H 1.48502 * 109.47198 * 60.00529 * 3 2 1 7 7 C 1.40068 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00075 * 168.01220 * 7 2 1 9 9 C 1.40889 * 120.00137 * 348.00754 * 7 2 1 10 10 C 1.41118 * 120.71618 * 331.86926 * 9 7 2 11 11 C 1.36890 * 118.38918 * 180.23619 * 10 9 7 12 12 C 1.38867 * 119.79999 * 359.48765 * 11 10 9 13 13 N 1.31741 * 121.50464 * 0.27614 * 12 11 10 14 14 C 1.32579 * 121.72095 * 0.02562 * 13 12 11 15 15 C 1.47819 * 119.98773 * 180.02562 * 14 13 12 16 16 C 1.39685 * 120.15225 * 136.15171 * 15 14 13 17 17 C 1.37910 * 119.84823 * 179.73930 * 16 15 14 18 18 C 1.38420 * 120.14526 * 0.50542 * 17 16 15 19 19 C 1.38373 * 120.30832 * 359.76953 * 18 17 16 20 20 C 1.50707 * 119.92196 * 179.97438 * 19 18 17 21 21 C 1.50694 * 109.47178 * 270.02032 * 20 19 18 22 22 O 1.20824 * 120.00204 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99934 * 179.97438 * 21 20 19 24 24 C 1.37940 * 120.15587 * 359.97438 * 19 18 17 25 25 H 0.97002 * 119.99692 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.80874 * 0.02562 * 10 9 7 27 27 H 1.08003 * 120.09875 * 179.75904 * 11 10 9 28 28 H 1.07999 * 119.24369 * 180.25819 * 12 11 10 29 29 H 1.08000 * 120.07565 * 359.97156 * 16 15 14 30 30 H 1.07998 * 119.92398 * 180.23201 * 17 16 15 31 31 H 1.07998 * 119.84157 * 179.74298 * 18 17 16 32 32 H 1.09005 * 109.47262 * 30.02309 * 20 19 18 33 33 H 1.08994 * 109.46814 * 150.01628 * 20 19 18 34 34 H 0.96698 * 116.99814 * 180.02562 * 23 21 20 35 35 H 1.08001 * 120.08091 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8829 2.3965 -1.2125 6 1 1.8831 2.3965 1.2126 7 6 2.0081 -1.2130 -0.0005 8 1 3.0705 -1.2231 -0.1948 9 6 1.3268 -2.4200 0.2524 10 6 0.1647 -2.4376 1.0528 11 6 -0.4567 -3.6375 1.2717 12 6 0.0563 -4.7947 0.7006 13 7 1.1389 -4.7706 -0.0497 14 6 1.7914 -3.6431 -0.2960 15 6 3.0021 -3.6601 -1.1439 16 6 3.1866 -2.6813 -2.1233 17 6 4.3211 -2.7001 -2.9072 18 6 5.2706 -3.6920 -2.7323 19 6 5.0914 -4.6680 -1.7679 20 6 6.1305 -5.7441 -1.5853 21 6 5.8013 -6.9161 -2.4736 22 8 4.8231 -6.8813 -3.1819 23 8 6.5949 -7.9987 -2.4779 24 6 3.9639 -4.6582 -0.9732 25 1 -0.4850 0.8401 0.0004 26 1 -0.2232 -1.5270 1.4850 27 1 -1.3458 -3.6835 1.8832 28 1 -0.4435 -5.7359 0.8758 29 1 2.4444 -1.9095 -2.2637 30 1 4.4668 -1.9418 -3.6622 31 1 6.1551 -3.7044 -3.3518 32 1 7.1117 -5.3508 -1.8514 33 1 6.1390 -6.0681 -0.5447 34 1 6.3433 -8.7251 -3.0645 35 1 3.8251 -5.4207 -0.2212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242259819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = -50.590011 kcal Electronic energy + Delta-G solvation = -21052.090080 eV Core-core repulsion = 17785.986286 eV Total energy + Delta-G solvation = -3266.103794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.22701 -38.96289 -37.74108 -36.00020 -34.21317 -32.86868 -31.40572 -30.57952 -28.86990 -27.47907 -25.71643 -22.87182 -22.47388 -21.48251 -20.76629 -19.60912 -18.00380 -17.46256 -16.48639 -15.95909 -15.91261 -15.66930 -15.08561 -14.67699 -14.14480 -14.00058 -13.52197 -13.17644 -12.65301 -12.64587 -12.46359 -12.12798 -11.92837 -11.60856 -11.54165 -11.41745 -11.38254 -11.12338 -10.81291 -10.55844 -10.46309 -10.41875 -9.80434 -9.48098 -8.59437 -8.22392 -8.08525 -8.01585 -7.36123 -6.91455 -4.56277 1.79557 1.99900 2.32947 2.60666 2.91577 2.97732 3.03568 3.12412 3.26570 3.78483 4.47205 4.55878 4.84169 5.09712 5.42233 5.48470 5.51732 5.59055 5.71409 5.74977 6.17355 6.20538 6.23215 6.31882 6.52726 6.59995 6.66541 6.76339 6.83740 6.97507 7.00960 7.12441 7.25268 7.45505 7.60993 7.69960 7.83296 7.87558 7.98258 8.34398 8.56378 8.63288 9.54571 9.96605 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.005312 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.227004 B = 5269.693864 C = 6477.671943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.440 4.440 8 H 0.090 0.910 9 C 0.085 3.915 10 C -0.128 4.128 11 C -0.150 4.150 12 C -0.031 4.031 13 N -0.452 5.452 14 C 0.012 3.988 15 C 0.025 3.975 16 C -0.086 4.086 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.064 4.064 21 C 0.473 3.527 22 O -0.498 6.498 23 O -0.525 6.525 24 C -0.090 4.090 25 H 0.284 0.716 26 H 0.128 0.872 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.406 0.594 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.609 -4.419 -2.054 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.108 0.892 9 C 0.081 3.919 10 C -0.154 4.154 11 C -0.170 4.170 12 C -0.192 4.192 13 N -0.160 5.160 14 C -0.126 4.126 15 C 0.024 3.976 16 C -0.105 4.105 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.098 4.098 20 C -0.101 4.101 21 C 0.315 3.685 22 O -0.384 6.384 23 O -0.337 6.337 24 C -0.109 4.109 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.264 0.736 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.526 -4.681 -2.353 10.872 hybrid contribution -0.436 1.058 0.016 1.144 sum 9.090 -3.623 -2.336 10.061 Atomic orbital electron populations 1.69755 1.07691 1.29678 1.34235 1.26009 0.94825 1.01585 0.92171 0.86197 0.81142 0.80438 0.78814 1.17975 1.19667 1.19566 1.19654 0.96763 0.90007 1.40483 0.89231 1.18349 0.91823 0.92602 0.89146 1.21434 0.97864 0.96821 0.99256 1.21451 0.99842 0.94592 1.01156 1.21675 0.97018 0.96745 1.03779 1.67045 1.06928 1.29749 1.12265 1.19523 0.98802 0.89756 1.04492 1.18384 0.92270 0.93423 0.93494 1.21518 0.97222 0.98295 0.93470 1.20920 0.94844 0.98832 1.00174 1.20759 0.99508 0.95685 0.98087 1.18964 0.95820 0.96123 0.98886 1.20206 1.00167 0.89879 0.99864 1.23620 0.80193 0.83126 0.81588 1.90777 1.27153 1.80609 1.39867 1.84537 1.55589 1.28366 1.65209 1.21030 0.92479 0.98217 0.99201 0.90477 0.85450 0.88298 0.86171 0.84755 0.86642 0.87284 0.87257 0.87106 0.73559 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.02 10.90 55.55 0.61 -18.41 16 2 C 0.07 1.70 5.26 -17.32 -0.09 1.61 16 3 Si 0.91 17.50 29.58 -169.99 -5.03 12.47 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.44 -10.80 6.73 -37.89 -0.25 -11.06 16 8 H 0.09 2.15 6.48 -52.49 -0.34 1.81 16 9 C 0.09 2.19 5.55 -106.42 -0.59 1.60 16 10 C -0.13 -3.19 8.72 -38.98 -0.34 -3.53 16 11 C -0.15 -3.43 10.03 -39.84 -0.40 -3.83 16 12 C -0.03 -0.72 11.16 -17.36 -0.19 -0.92 16 13 N -0.45 -11.33 10.15 -9.17 -0.09 -11.42 16 14 C 0.01 0.31 6.43 -82.24 -0.53 -0.22 16 15 C 0.03 0.57 5.25 -104.91 -0.55 0.02 16 16 C -0.09 -1.81 7.85 -39.16 -0.31 -2.11 16 17 C -0.13 -2.29 10.03 -39.63 -0.40 -2.69 16 18 C -0.12 -1.99 9.69 -39.46 -0.38 -2.37 16 19 C -0.10 -1.64 4.37 -104.68 -0.46 -2.10 16 20 C -0.06 -0.79 5.94 -29.03 -0.17 -0.97 16 21 C 0.47 6.46 8.32 36.00 0.30 6.76 16 22 O -0.50 -8.96 16.79 -18.75 -0.31 -9.27 16 23 O -0.52 -5.33 13.42 -39.26 -0.53 -5.86 16 24 C -0.09 -1.81 9.31 -39.16 -0.36 -2.17 16 25 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 26 H 0.13 3.20 6.32 -52.49 -0.33 2.87 16 27 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 28 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 29 H 0.13 2.95 6.76 -52.49 -0.35 2.60 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 34 H 0.41 2.50 9.10 45.56 0.41 2.92 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -30.51 310.21 -8.11 -38.62 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -2.70 Total: 11.18 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -4.73 Total: -21.98 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.51 Total: -29.83 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.84 Total: -15.13 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.51 -8.11 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242259819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.971 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds