Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86807 * 119.99782 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46996 * 300.00166 * 3 2 1 6 6 H 1.48502 * 109.47198 * 60.00529 * 3 2 1 7 7 C 1.40068 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00075 * 168.01220 * 7 2 1 9 9 C 1.40889 * 120.00137 * 348.00754 * 7 2 1 10 10 C 1.41118 * 120.71618 * 331.86926 * 9 7 2 11 11 C 1.36890 * 118.38918 * 180.23619 * 10 9 7 12 12 C 1.38867 * 119.79999 * 359.48765 * 11 10 9 13 13 N 1.31741 * 121.50464 * 0.27614 * 12 11 10 14 14 C 1.32579 * 121.72095 * 0.02562 * 13 12 11 15 15 C 1.47819 * 119.98773 * 180.02562 * 14 13 12 16 16 C 1.39685 * 120.15225 * 136.15171 * 15 14 13 17 17 C 1.37910 * 119.84823 * 179.73930 * 16 15 14 18 18 C 1.38420 * 120.14526 * 0.50542 * 17 16 15 19 19 C 1.38373 * 120.30832 * 359.76953 * 18 17 16 20 20 C 1.50707 * 119.92196 * 179.97438 * 19 18 17 21 21 C 1.50694 * 109.47178 * 270.02032 * 20 19 18 22 22 O 1.20824 * 120.00204 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99934 * 179.97438 * 21 20 19 24 24 C 1.37940 * 120.15587 * 359.97438 * 19 18 17 25 25 H 0.97002 * 119.99692 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.80874 * 0.02562 * 10 9 7 27 27 H 1.08003 * 120.09875 * 179.75904 * 11 10 9 28 28 H 1.07999 * 119.24369 * 180.25819 * 12 11 10 29 29 H 1.08000 * 120.07565 * 359.97156 * 16 15 14 30 30 H 1.07998 * 119.92398 * 180.23201 * 17 16 15 31 31 H 1.07998 * 119.84157 * 179.74298 * 18 17 16 32 32 H 1.09005 * 109.47262 * 30.02309 * 20 19 18 33 33 H 1.08994 * 109.46814 * 150.01628 * 20 19 18 34 34 H 0.96698 * 116.99814 * 180.02562 * 23 21 20 35 35 H 1.08001 * 120.08091 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8829 2.3965 -1.2125 6 1 1.8831 2.3965 1.2126 7 6 2.0081 -1.2130 -0.0005 8 1 3.0705 -1.2231 -0.1948 9 6 1.3268 -2.4200 0.2524 10 6 0.1647 -2.4376 1.0528 11 6 -0.4567 -3.6375 1.2717 12 6 0.0563 -4.7947 0.7006 13 7 1.1389 -4.7706 -0.0497 14 6 1.7914 -3.6431 -0.2960 15 6 3.0021 -3.6601 -1.1439 16 6 3.1866 -2.6813 -2.1233 17 6 4.3211 -2.7001 -2.9072 18 6 5.2706 -3.6920 -2.7323 19 6 5.0914 -4.6680 -1.7679 20 6 6.1305 -5.7441 -1.5853 21 6 5.8013 -6.9161 -2.4736 22 8 4.8231 -6.8813 -3.1819 23 8 6.5949 -7.9987 -2.4779 24 6 3.9639 -4.6582 -0.9732 25 1 -0.4850 0.8401 0.0004 26 1 -0.2232 -1.5270 1.4850 27 1 -1.3458 -3.6835 1.8832 28 1 -0.4435 -5.7359 0.8758 29 1 2.4444 -1.9095 -2.2637 30 1 4.4668 -1.9418 -3.6622 31 1 6.1551 -3.7044 -3.3518 32 1 7.1117 -5.3508 -1.8514 33 1 6.1390 -6.0681 -0.5447 34 1 6.3433 -8.7251 -3.0645 35 1 3.8251 -5.4207 -0.2212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242259819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -68.783320 kcal Electronic energy + Delta-G solvation = -21052.879001 eV Core-core repulsion = 17785.986286 eV Total energy + Delta-G solvation = -3266.892715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33666 -40.57794 -39.28308 -37.01025 -36.01806 -34.25000 -32.96471 -32.38978 -30.47962 -28.77588 -27.53522 -24.51651 -23.78722 -23.14095 -22.24955 -21.06383 -19.29060 -19.00602 -17.76872 -17.43825 -17.20687 -16.99522 -16.62918 -16.33158 -15.69752 -15.56627 -15.05325 -14.36569 -14.28351 -14.10167 -13.98975 -13.61792 -13.26550 -13.17825 -13.09625 -13.04737 -12.78917 -12.46435 -12.36085 -12.05666 -11.86686 -11.59387 -11.53397 -11.21972 -10.34495 -9.95814 -9.87078 -9.55348 -9.07313 -8.67701 -6.42055 0.24394 0.55788 0.88244 1.18266 1.30651 1.38812 1.49743 1.53846 2.17378 2.27129 2.71785 3.07749 3.64598 3.70285 3.87806 4.09967 4.30127 4.43172 4.46325 4.55782 4.59528 4.64845 4.72882 4.75110 4.85236 5.02334 5.14959 5.19677 5.30229 5.32232 5.65876 5.67647 5.70494 5.77872 5.86307 6.02362 6.04345 6.24596 6.49963 6.72591 6.78928 7.08046 7.68650 8.23090 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.005312 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.227004 B = 5269.693864 C = 6477.671943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.056 3.944 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.043 4.043 13 N -0.474 5.474 14 C -0.003 4.003 15 C -0.011 4.011 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.091 4.091 20 C -0.064 4.064 21 C 0.483 3.517 22 O -0.551 6.551 23 O -0.511 6.511 24 C -0.105 4.105 25 H 0.292 0.708 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.425 0.575 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 -4.477 -2.730 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.104 0.896 9 C 0.052 3.948 10 C -0.178 4.178 11 C -0.169 4.169 12 C -0.203 4.203 13 N -0.181 5.181 14 C -0.141 4.141 15 C -0.012 4.012 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.100 4.100 21 C 0.327 3.673 22 O -0.441 6.441 23 O -0.324 6.324 24 C -0.124 4.124 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.287 0.713 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.165 -4.782 -3.019 13.415 hybrid contribution -1.195 0.932 0.183 1.527 sum 10.970 -3.850 -2.837 11.967 Atomic orbital electron populations 1.69799 1.09069 1.31030 1.34497 1.26819 0.95503 1.04493 0.91152 0.85150 0.79654 0.75944 0.79130 1.17773 1.18853 1.18807 1.19745 0.96661 0.90600 1.41355 0.89581 1.18719 0.92641 0.93584 0.89874 1.21497 0.98672 0.97374 1.00266 1.21734 1.00478 0.93747 1.00944 1.22223 0.96718 0.98102 1.03228 1.67113 1.07795 1.30073 1.13169 1.20021 0.99820 0.89616 1.04627 1.18509 0.92549 0.95486 0.94666 1.21404 0.98460 0.97973 0.94797 1.21267 0.93672 0.99817 0.99724 1.21275 1.00169 0.94194 0.97517 1.19368 0.95311 0.97077 0.97322 1.20321 1.00383 0.88437 1.00901 1.23708 0.79311 0.83783 0.80518 1.90780 1.29385 1.81706 1.42232 1.84483 1.54371 1.28177 1.65394 1.21077 0.93576 0.97567 1.00208 0.89658 0.86327 0.85183 0.83277 0.87147 0.83722 0.82955 0.83093 0.85289 0.71318 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.61 10.90 21.85 0.24 -40.37 16 2 C 0.04 1.74 5.26 85.29 0.45 2.18 16 3 Si 0.98 36.05 29.58 68.60 2.03 38.08 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.45 -23.30 6.73 23.36 0.16 -23.14 16 8 H 0.09 4.33 6.48 -2.91 -0.02 4.31 16 9 C 0.06 3.04 5.55 -21.03 -0.12 2.92 16 10 C -0.15 -7.92 8.72 22.66 0.20 -7.72 16 11 C -0.15 -6.95 10.03 22.10 0.22 -6.72 16 12 C -0.04 -2.01 11.16 84.86 0.95 -1.06 16 13 N -0.47 -24.58 10.15 -182.93 -1.86 -26.44 16 14 C 0.00 -0.15 6.43 42.47 0.27 0.13 16 15 C -0.01 -0.53 5.25 -20.05 -0.11 -0.63 16 16 C -0.11 -4.62 7.85 22.54 0.18 -4.45 16 17 C -0.13 -4.30 10.03 22.24 0.22 -4.08 16 18 C -0.11 -3.35 9.69 22.35 0.22 -3.13 16 19 C -0.09 -2.85 4.37 -19.90 -0.09 -2.94 16 20 C -0.06 -1.35 5.94 29.10 0.17 -1.18 16 21 C 0.48 11.80 8.32 71.23 0.59 12.39 16 22 O -0.55 -19.03 16.79 21.97 0.37 -18.66 16 23 O -0.51 -8.59 13.42 -51.42 -0.69 -9.28 16 24 C -0.11 -4.26 9.31 22.54 0.21 -4.05 16 25 H 0.29 13.02 8.29 -92.71 -0.77 12.25 16 26 H 0.12 6.25 6.32 -2.91 -0.02 6.23 16 27 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 28 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 29 H 0.11 5.16 6.76 -2.91 -0.02 5.14 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.15 2.01 8.08 -2.38 -0.02 1.99 16 33 H 0.13 2.34 8.08 -2.39 -0.02 2.32 16 34 H 0.43 3.90 9.10 -74.06 -0.67 3.23 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -70.03 310.21 4.08 -65.95 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.46 Total: 32.20 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 3.53 Total: -41.48 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.62 Total: -66.81 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.32 Total: -27.94 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -70.03 4.08 -65.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242259819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.831 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds