Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48497 * 109.46915 * 85.79959 * 3 2 1 5 5 H 1.48496 * 109.46902 * 205.79754 * 3 2 1 6 6 H 1.48499 * 109.47079 * 325.79821 * 3 2 1 7 7 C 1.40013 * 119.99742 * 179.72130 * 2 1 3 8 8 H 1.08005 * 119.99995 * 188.93333 * 7 2 1 9 9 C 1.41378 * 120.00443 * 8.93853 * 7 2 1 10 10 C 1.40715 * 119.76762 * 185.75415 * 9 7 2 11 11 C 1.38255 * 119.18602 * 179.78926 * 10 9 7 12 12 C 1.38740 * 118.68682 * 0.47370 * 11 10 9 13 13 C 1.39862 * 119.46154 * 359.74925 * 12 11 10 14 14 C 1.48314 * 119.60209 * 179.97438 * 13 12 11 15 15 C 1.39402 * 120.12992 * 10.55911 * 14 13 12 16 16 C 1.37981 * 119.87887 * 179.97438 * 15 14 13 17 17 C 1.38357 * 120.12008 * 359.97267 * 16 15 14 18 18 C 1.38307 * 120.25602 * 0.02679 * 17 16 15 19 19 C 1.50703 * 119.93737 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47113 * 90.00026 * 19 18 17 21 21 O 1.20829 * 120.00154 * 359.97438 * 20 19 18 22 22 O 1.34233 * 120.00078 * 180.02562 * 20 19 18 23 23 C 1.38029 * 120.12431 * 359.73812 * 18 17 16 24 24 N 1.32238 * 120.79024 * 0.02562 * 13 12 11 25 25 H 0.97000 * 119.99912 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.41382 * 359.97438 * 10 9 7 27 27 H 1.07996 * 120.65927 * 180.22482 * 11 10 9 28 28 H 1.07994 * 120.27088 * 179.72488 * 12 11 10 29 29 H 1.08007 * 120.06086 * 359.97438 * 15 14 13 30 30 H 1.07996 * 119.94154 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.86884 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.46734 * 209.99744 * 19 18 17 33 33 H 1.08995 * 109.47094 * 329.99733 * 19 18 17 34 34 H 0.96695 * 117.00151 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.06280 * 180.25367 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4002 2.0977 1.3963 5 1 3.5806 1.4162 -0.6093 6 1 1.4862 2.6254 -0.7870 7 6 2.0075 -1.2126 0.0059 8 1 3.0778 -1.2176 0.1512 9 6 1.3136 -2.4304 -0.1784 10 6 2.0003 -3.6520 -0.0511 11 6 1.3089 -4.8359 -0.2295 12 6 -0.0423 -4.7779 -0.5391 13 6 -0.6681 -3.5327 -0.6570 14 6 -2.1123 -3.4670 -0.9885 15 6 -2.8889 -4.6244 -0.9652 16 6 -4.2320 -4.5573 -1.2739 17 6 -4.8084 -3.3440 -1.6057 18 6 -4.0428 -2.1924 -1.6304 19 6 -4.6781 -0.8746 -1.9922 20 6 -5.1919 -0.2051 -0.7437 21 8 -5.0565 -0.7430 0.3297 22 8 -5.8008 0.9885 -0.8242 23 6 -2.6993 -2.2469 -1.3186 24 7 0.0125 -2.4132 -0.4775 25 1 -0.4850 0.8401 -0.0004 26 1 3.0538 -3.6648 0.1861 27 1 1.8115 -5.7870 -0.1337 28 1 -0.6061 -5.6868 -0.6883 29 1 -2.4401 -5.5720 -0.7059 30 1 -4.8347 -5.4532 -1.2558 31 1 -5.8602 -3.2960 -1.8462 32 1 -3.9374 -0.2332 -2.4699 33 1 -5.5065 -1.0470 -2.6792 34 1 -6.1138 1.3783 0.0034 35 1 -2.1033 -1.3463 -1.3343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242262736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -40.978872 kcal Electronic energy + Delta-G solvation = -21075.736915 eV Core-core repulsion = 17810.049891 eV Total energy + Delta-G solvation = -3265.687024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18215 -38.93267 -37.70753 -35.94029 -33.81163 -32.78773 -31.52803 -30.40873 -28.82942 -27.76710 -25.60887 -23.01916 -22.56754 -21.35802 -20.75305 -19.57065 -17.94009 -17.41622 -16.47722 -16.11512 -15.86052 -15.39308 -14.67544 -14.59638 -14.55629 -13.69880 -13.44483 -13.15506 -12.74452 -12.64787 -12.55822 -12.17447 -12.05897 -11.73069 -11.34411 -11.25037 -11.07811 -10.82091 -10.74703 -10.62644 -10.40297 -10.37275 -9.94794 -9.42728 -8.79717 -8.31732 -8.09312 -7.63559 -7.23286 -6.50998 -4.53950 1.53123 1.88349 2.40472 2.77965 3.00523 3.06855 3.09610 3.17382 3.33250 3.91953 4.35970 4.79069 4.82207 5.07803 5.30764 5.43399 5.51694 5.54064 5.74099 5.86321 5.90524 6.02556 6.18240 6.41945 6.45379 6.53155 6.61905 6.72454 6.79370 6.87389 6.95831 7.11082 7.24904 7.32440 7.53165 7.58190 7.70436 7.99469 8.05076 8.19312 8.62905 8.87466 10.00632 10.26000 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.006739 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.810219 B = 4153.692710 C = 6180.014694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.275 1.275 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.259 3.741 10 C -0.272 4.272 11 C -0.059 4.059 12 C -0.300 4.300 13 C 0.175 3.825 14 C -0.016 4.016 15 C -0.105 4.105 16 C -0.132 4.132 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.065 4.065 20 C 0.475 3.525 21 O -0.498 6.498 22 O -0.524 6.524 23 C -0.057 4.057 24 N -0.471 5.471 25 H 0.273 0.727 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.407 0.593 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 -0.153 -4.178 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.152 4.152 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.134 3.866 10 C -0.295 4.295 11 C -0.083 4.083 12 C -0.324 4.324 13 C 0.031 3.969 14 C -0.017 4.017 15 C -0.124 4.124 16 C -0.150 4.150 17 C -0.130 4.130 18 C -0.099 4.099 19 C -0.102 4.102 20 C 0.317 3.683 21 O -0.384 6.384 22 O -0.336 6.336 23 C -0.076 4.076 24 N -0.184 5.184 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.265 0.735 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.016 0.498 -4.296 10.910 hybrid contribution 0.646 0.077 0.792 1.025 sum -9.370 0.575 -3.503 10.020 Atomic orbital electron populations 1.70057 1.07260 1.27868 1.28746 1.26019 0.94831 1.01022 0.93295 0.86351 0.80682 0.80957 0.79066 1.19534 1.18459 1.20023 1.19571 0.95137 0.89581 1.42161 0.89768 1.18494 0.87801 0.91986 0.88342 1.21791 0.99695 0.93580 1.14461 1.20792 0.93989 0.96723 0.96814 1.21193 0.95790 0.96770 1.18608 1.19690 0.91752 0.90073 0.95428 1.18805 0.92353 0.92761 0.97768 1.21277 0.93591 0.98138 0.99353 1.20846 0.94935 0.97291 1.01912 1.20838 0.98615 0.92528 1.01048 1.19155 0.94302 0.92850 1.03628 1.20200 1.02065 0.94645 0.93330 1.23509 0.74430 0.78576 0.91815 1.90776 1.52709 1.64124 1.30786 1.84523 1.70885 1.35650 1.42559 1.21431 0.93154 0.99037 0.93989 1.68626 1.07800 1.25823 1.16121 0.91618 0.88245 0.88453 0.88408 0.85941 0.86479 0.86978 0.86740 0.87300 0.73519 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.72 11.58 55.55 0.64 -18.08 16 2 C 0.07 1.85 5.46 -17.35 -0.09 1.76 16 3 Si 0.91 18.44 29.57 -169.99 -5.03 13.41 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.43 -11.50 9.13 -37.72 -0.34 -11.85 16 8 H 0.08 2.09 7.86 -52.48 -0.41 1.68 16 9 C 0.26 7.09 6.52 -85.01 -0.55 6.54 16 10 C -0.27 -6.72 9.83 -38.64 -0.38 -7.10 16 11 C -0.06 -1.33 10.15 -39.39 -0.40 -1.73 16 12 C -0.30 -6.85 9.45 -38.79 -0.37 -7.21 16 13 C 0.17 4.33 6.71 -82.94 -0.56 3.77 16 14 C -0.02 -0.35 5.86 -104.90 -0.62 -0.96 16 15 C -0.10 -1.89 9.39 -39.24 -0.37 -2.26 16 16 C -0.13 -2.04 10.03 -39.63 -0.40 -2.44 16 17 C -0.11 -1.70 9.69 -39.51 -0.38 -2.08 16 18 C -0.10 -1.66 4.37 -104.67 -0.46 -2.12 16 19 C -0.07 -0.86 5.94 -29.04 -0.17 -1.03 16 20 C 0.48 6.97 8.32 36.00 0.30 7.27 16 21 O -0.50 -9.43 16.79 -18.75 -0.31 -9.74 16 22 O -0.52 -5.92 13.42 -39.26 -0.53 -6.44 16 23 C -0.06 -1.19 9.22 -39.24 -0.36 -1.55 16 24 N -0.47 -12.88 7.08 -7.68 -0.05 -12.93 16 25 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.10 1.94 6.31 -52.49 -0.33 1.61 16 29 H 0.12 2.03 6.30 -52.48 -0.33 1.70 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.40 8.09 -51.93 -0.42 0.98 16 33 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.41 3.00 9.10 45.56 0.41 3.41 16 35 H 0.15 3.34 7.57 -52.48 -0.40 2.95 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -32.28 313.69 -8.43 -40.71 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.72 Total: 9.37 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -5.15 Total: -21.01 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.59 Total: -31.01 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.84 Total: -16.19 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.28 -8.43 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242262736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.271 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds