Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48500 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47279 * 300.00679 * 3 2 1 6 6 H 1.48503 * 109.46918 * 60.00297 * 3 2 1 7 7 C 1.40033 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.41426 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.40473 * 119.77676 * 179.97438 * 9 7 2 11 11 C 1.39305 * 118.83688 * 179.97438 * 10 9 7 12 12 C 1.48390 * 120.82236 * 179.97438 * 11 10 9 13 13 C 1.39363 * 120.12037 * 359.75083 * 12 11 10 14 14 C 1.37999 * 119.87814 * 179.77068 * 13 12 11 15 15 C 1.38342 * 120.11762 * 0.50237 * 14 13 12 16 16 C 1.38305 * 120.24985 * 359.74747 * 15 14 13 17 17 C 1.50696 * 119.94288 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46997 * 269.97883 * 17 16 15 19 19 O 1.20824 * 120.00420 * 359.97438 * 18 17 16 20 20 O 1.34235 * 120.00140 * 180.02562 * 18 17 16 21 21 C 1.38046 * 120.11555 * 359.97438 * 16 15 14 22 22 C 1.40034 * 118.35901 * 0.02562 * 11 10 9 23 23 C 1.38505 * 119.42173 * 359.97438 * 22 11 10 24 24 N 1.31481 * 121.14573 * 359.97438 * 23 22 11 25 25 H 0.97001 * 119.99821 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.57971 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.06023 * 0.02562 * 13 12 11 28 28 H 1.07994 * 119.94266 * 180.23061 * 14 13 12 29 29 H 1.08000 * 119.88039 * 179.72289 * 15 14 13 30 30 H 1.08998 * 109.47170 * 29.97837 * 17 16 15 31 31 H 1.09000 * 109.47087 * 149.98125 * 17 16 15 32 32 H 0.96697 * 117.00362 * 180.02562 * 20 18 17 33 33 H 1.08001 * 120.05828 * 179.97438 * 21 16 15 34 34 H 1.08001 * 120.29314 * 179.97438 * 22 11 10 35 35 H 1.08004 * 119.42752 * 179.72587 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8826 2.3964 1.2126 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3004 -2.4375 -0.0016 10 6 2.0074 -3.6513 -0.0027 11 6 1.2912 -4.8461 -0.0032 12 6 1.9932 -6.1534 -0.0050 13 6 3.3861 -6.1993 -0.0113 14 6 4.0338 -7.4178 -0.0081 15 6 3.3030 -8.5924 -0.0091 16 6 1.9205 -8.5529 -0.0080 17 6 1.1313 -9.8367 -0.0085 18 6 0.8668 -10.2631 -1.4295 19 8 1.2766 -9.5931 -2.3476 20 8 0.1749 -11.3869 -1.6752 21 6 1.2623 -7.3395 -0.0054 22 6 -0.1078 -4.7830 -0.0032 23 6 -0.7331 -3.5471 -0.0021 24 7 -0.0360 -2.4323 -0.0006 25 1 -0.4850 0.8401 0.0004 26 1 3.0874 -3.6580 -0.0031 27 1 3.9575 -5.2828 -0.0146 28 1 5.1131 -7.4545 -0.0093 29 1 3.8139 -9.5439 -0.0111 30 1 1.6998 -10.6128 0.5039 31 1 0.1834 -9.6806 0.5065 32 1 0.0307 -11.6197 -2.6026 33 1 0.1827 -7.3097 -0.0050 34 1 -0.6940 -5.6900 -0.0040 35 1 -1.8120 -3.4983 -0.0066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242264202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -40.445688 kcal Electronic energy + Delta-G solvation = -20440.719992 eV Core-core repulsion = 17175.056089 eV Total energy + Delta-G solvation = -3265.663903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46698 -39.14805 -37.79803 -36.21404 -33.87679 -33.13755 -31.88920 -30.10138 -28.87056 -27.86016 -25.72597 -23.18068 -22.81966 -21.69980 -20.59261 -19.88135 -18.21402 -17.39859 -16.65590 -16.37963 -16.15608 -15.53225 -14.87500 -14.72727 -14.37950 -13.76972 -13.64162 -13.40442 -13.09070 -12.65822 -12.57464 -12.39823 -12.17592 -11.94543 -11.62365 -11.33497 -11.23414 -11.18231 -10.79070 -10.69539 -10.60821 -10.30130 -9.81216 -9.59310 -9.10286 -8.59430 -7.68920 -7.60078 -7.48476 -6.42556 -4.55315 1.34051 1.57874 2.11222 2.73033 2.87131 3.08293 3.12103 3.12541 3.23035 3.93113 4.24397 4.52812 4.76840 4.81263 5.14121 5.24250 5.27098 5.30906 5.46229 5.70764 5.78985 5.89857 6.02732 6.16605 6.20226 6.35684 6.49537 6.62699 6.64816 6.68232 6.78389 6.97269 7.13345 7.21491 7.31209 7.50949 7.69418 7.77457 7.97882 8.20170 8.62718 8.88505 10.08514 10.29603 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.003502 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.526133 B = 7993.812137 C = 8586.119489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.254 3.746 10 C -0.252 4.252 11 C -0.003 4.003 12 C -0.015 4.015 13 C -0.107 4.107 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.089 4.089 17 C -0.067 4.067 18 C 0.474 3.526 19 O -0.500 6.500 20 O -0.522 6.522 21 C -0.095 4.095 22 C -0.304 4.304 23 C 0.124 3.876 24 N -0.482 5.482 25 H 0.272 0.728 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.409 0.591 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -16.056 0.602 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.275 4.275 11 C -0.009 4.009 12 C -0.015 4.015 13 C -0.125 4.125 14 C -0.138 4.138 15 C -0.135 4.135 16 C -0.089 4.089 17 C -0.105 4.105 18 C 0.316 3.684 19 O -0.386 6.386 20 O -0.335 6.335 21 C -0.113 4.113 22 C -0.327 4.327 23 C -0.041 4.041 24 N -0.195 5.195 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.267 0.733 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.087 -14.773 0.756 14.938 hybrid contribution 0.648 -0.315 -0.695 1.001 sum 2.735 -15.087 0.061 15.333 Atomic orbital electron populations 1.70143 1.07201 1.27696 1.28591 1.26074 0.94912 1.01106 0.93584 0.86276 0.80841 0.81166 0.78581 1.18376 1.19803 1.19806 1.19661 0.94282 0.89364 1.42970 0.89764 1.18559 0.88347 0.91700 0.88439 1.21867 0.98592 0.92610 1.14389 1.18582 0.93187 0.90580 0.98585 1.19029 0.92853 0.92882 0.96765 1.21384 0.94069 0.98048 0.98999 1.20974 0.99525 0.92268 1.01001 1.20846 0.93001 0.98089 1.01597 1.19065 0.93605 0.92791 1.03428 1.20229 1.02984 0.96785 0.90458 1.23521 0.74282 0.77625 0.92981 1.90784 1.47882 1.53110 1.46854 1.84526 1.69717 1.42943 1.36300 1.21075 0.99890 0.90994 0.99356 1.21325 0.93427 0.97954 1.19979 1.22456 0.98815 0.88635 0.94166 1.68716 1.07275 1.26816 1.16719 0.91640 0.87902 0.85456 0.86158 0.86699 0.86937 0.86776 0.73280 0.85847 0.88590 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.11 11.46 55.55 0.64 -18.47 16 2 C 0.07 1.75 5.50 -17.34 -0.10 1.65 16 3 Si 0.91 18.56 29.56 -169.99 -5.02 13.53 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.43 -11.55 9.14 -37.70 -0.34 -11.90 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.25 6.98 6.55 -85.02 -0.56 6.42 16 10 C -0.25 -6.19 9.22 -38.34 -0.35 -6.54 16 11 C 0.00 -0.08 5.91 -104.65 -0.62 -0.69 16 12 C -0.02 -0.29 5.88 -104.90 -0.62 -0.91 16 13 C -0.11 -1.84 9.45 -39.25 -0.37 -2.21 16 14 C -0.12 -1.71 10.03 -39.63 -0.40 -2.11 16 15 C -0.12 -1.57 9.69 -39.52 -0.38 -1.95 16 16 C -0.09 -1.23 4.37 -104.67 -0.46 -1.69 16 17 C -0.07 -0.67 5.94 -29.04 -0.17 -0.84 16 18 C 0.47 5.47 8.32 36.00 0.30 5.77 16 19 O -0.50 -7.92 16.79 -18.75 -0.31 -8.24 16 20 O -0.52 -4.41 13.42 -39.27 -0.53 -4.93 16 21 C -0.10 -1.59 9.10 -39.25 -0.36 -1.94 16 22 C -0.30 -6.85 9.51 -38.81 -0.37 -7.22 16 23 C 0.12 3.04 11.17 -17.60 -0.20 2.84 16 24 N -0.48 -13.41 7.85 -11.20 -0.09 -13.50 16 25 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 26 H 0.10 2.31 6.33 -52.48 -0.33 1.98 16 27 H 0.13 2.13 6.29 -52.48 -0.33 1.80 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.41 1.88 9.10 45.56 0.41 2.29 16 33 H 0.12 1.95 6.29 -52.49 -0.33 1.63 16 34 H 0.10 1.88 6.32 -52.49 -0.33 1.55 16 35 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -33.10 310.99 -8.18 -41.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.56 Total: 6.97 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -4.99 Total: -21.33 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.55 Total: -31.98 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.84 Total: -13.17 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.10 -8.18 -41.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242264202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.839 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds