Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48505 * 109.47162 * 275.41227 * 3 2 1 5 5 H 1.48503 * 109.47255 * 35.41517 * 3 2 1 6 6 H 1.48504 * 109.47289 * 155.41733 * 3 2 1 7 7 C 1.40016 * 119.99519 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00510 * 341.54232 * 7 2 1 9 9 C 1.41362 * 119.99527 * 161.54710 * 7 2 1 10 10 C 1.40712 * 119.76508 * 330.18910 * 9 7 2 11 11 C 1.38278 * 119.19447 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.70130 * 359.97438 * 11 10 9 13 13 C 1.39939 * 119.45615 * 359.97438 * 12 11 10 14 14 C 1.48199 * 119.60564 * 179.97438 * 13 12 11 15 15 C 1.39460 * 120.11023 * 354.71674 * 14 13 12 16 16 C 1.37906 * 119.97111 * 179.67364 * 15 14 13 17 17 C 1.38377 * 120.27210 * 0.62118 * 16 15 14 18 18 C 1.38691 * 120.34859 * 359.71982 * 17 16 15 19 19 C 1.38889 * 119.89606 * 359.91283 * 18 17 16 20 20 O 1.35969 * 120.85924 * 180.24628 * 19 18 17 21 21 C 1.43185 * 116.72521 * 342.82011 * 20 19 18 22 22 C 1.53473 * 108.23455 * 46.13944 * 21 20 19 23 23 O 1.36141 * 119.36488 * 179.81340 * 18 17 16 24 24 N 1.32278 * 120.77981 * 0.02562 * 13 12 11 25 25 H 0.96995 * 120.00028 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.40196 * 359.95440 * 10 9 7 27 27 H 1.08002 * 120.65363 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.27211 * 179.97438 * 12 11 10 29 29 H 1.07998 * 120.01154 * 359.95934 * 15 14 13 30 30 H 1.07997 * 119.86158 * 180.33477 * 16 15 14 31 31 H 1.08001 * 119.82420 * 179.69846 * 17 16 15 32 32 H 1.08998 * 109.71011 * 165.82488 * 21 20 19 33 33 H 1.09002 * 109.70825 * 286.45953 * 21 20 19 34 34 H 1.09001 * 109.70973 * 59.98216 * 22 21 20 35 35 H 1.08993 * 109.71530 * 180.57426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3746 2.1124 -1.3939 5 1 1.5008 2.6169 0.8113 6 1 3.5916 1.4098 0.5824 7 6 2.0075 -1.2126 -0.0005 8 1 1.5092 -2.1239 0.2951 9 6 3.3666 -1.2439 -0.3881 10 6 3.8482 -0.3089 -1.3229 11 6 5.1798 -0.3499 -1.6932 12 6 5.9991 -1.3155 -1.1273 13 6 5.4620 -2.2175 -0.2020 14 6 6.3342 -3.2509 0.4042 15 6 7.6529 -3.3939 -0.0266 16 6 8.4641 -4.3520 0.5442 17 6 7.9716 -5.1825 1.5354 18 6 6.6601 -5.0557 1.9683 19 6 5.8359 -4.0894 1.4062 20 8 4.5486 -3.9447 1.8192 21 6 3.9803 -5.0366 2.5505 22 6 4.9952 -5.4839 3.6114 23 8 6.1952 -5.8859 2.9420 24 7 4.1847 -2.1592 0.1371 25 1 -0.4850 0.8400 0.0004 26 1 3.1857 0.4315 -1.7463 27 1 5.5745 0.3566 -2.4083 28 1 7.0430 -1.3708 -1.3986 29 1 8.0399 -2.7516 -0.8038 30 1 9.4866 -4.4577 0.2129 31 1 8.6118 -5.9336 1.9740 32 1 3.0591 -4.7143 3.0358 33 1 3.7694 -5.8633 1.8720 34 1 5.2106 -4.6555 4.2863 35 1 4.5902 -6.3230 4.1770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242467316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = -9.166660 kcal Electronic energy + Delta-G solvation = -21665.046185 eV Core-core repulsion = 18400.738643 eV Total energy + Delta-G solvation = -3264.307543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89951 -38.69051 -37.21087 -36.78918 -33.81247 -31.82415 -31.29626 -30.75976 -29.01895 -28.10083 -25.78431 -24.33054 -23.44800 -21.38066 -20.88272 -20.29015 -18.41075 -17.55180 -16.94688 -16.64279 -15.86677 -15.17944 -14.92061 -14.77908 -14.46301 -14.29888 -14.10911 -13.76424 -13.49280 -13.06654 -12.81521 -12.54669 -12.37055 -11.84966 -11.68414 -11.50025 -11.14455 -10.97788 -10.76706 -10.70763 -10.39252 -10.09880 -9.99553 -9.35494 -8.83842 -8.38166 -7.88622 -7.76896 -7.27964 -7.00449 -4.62125 1.22896 1.63596 2.52059 2.70898 3.05537 3.17655 3.26219 3.29450 3.64231 3.92400 4.02899 4.46053 4.54148 4.82774 4.99976 5.09110 5.12960 5.35631 5.40244 5.52756 5.55178 5.67961 5.74532 5.88688 6.03705 6.20063 6.26052 6.33954 6.45088 6.59289 6.74654 6.84398 6.95113 7.09316 7.22214 7.42905 7.46732 7.73420 7.86072 8.29564 8.45826 8.69510 9.62766 10.01820 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.005896 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.598596 B = 4747.678925 C = 5837.179955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.089 3.911 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.418 4.418 8 H 0.098 0.902 9 C 0.255 3.745 10 C -0.278 4.278 11 C -0.050 4.050 12 C -0.284 4.284 13 C 0.187 3.813 14 C -0.026 4.026 15 C -0.102 4.102 16 C -0.128 4.128 17 C -0.117 4.117 18 C 0.033 3.967 19 C 0.085 3.915 20 O -0.246 6.246 21 C 0.014 3.986 22 C 0.020 3.980 23 O -0.313 6.313 24 N -0.503 5.503 25 H 0.287 0.713 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -6.471 3.617 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.132 4.132 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.172 1.172 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.129 3.871 10 C -0.300 4.300 11 C -0.074 4.074 12 C -0.307 4.307 13 C 0.043 3.957 14 C -0.028 4.028 15 C -0.121 4.121 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.012 4.012 19 C 0.037 3.963 20 O -0.157 6.157 21 C -0.062 4.062 22 C -0.056 4.056 23 O -0.228 6.228 24 N -0.216 5.216 25 H 0.098 0.902 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.898 -6.952 4.268 12.826 hybrid contribution 0.369 1.352 -0.525 1.497 sum 10.267 -5.600 3.742 12.279 Atomic orbital electron populations 1.69628 1.07970 1.30384 1.34510 1.26057 0.94750 1.01457 0.90945 0.86335 0.81225 0.79889 0.78848 1.19487 1.21514 1.17175 1.19151 0.91536 0.96398 1.37915 0.88426 1.18615 0.92931 0.87175 0.88355 1.21974 0.96312 1.06250 1.05484 1.20892 0.93604 0.96119 0.96805 1.21254 0.99593 1.02618 1.07198 1.19368 0.91189 0.92219 0.92877 1.18241 0.93597 0.96460 0.94489 1.21039 0.91965 0.98767 1.00353 1.20689 0.99832 0.96464 0.97642 1.20345 0.91972 1.01547 0.99786 1.18827 0.93794 0.95230 0.93337 1.19085 0.85022 0.96708 0.95474 1.86896 1.22301 1.38131 1.68409 1.23634 0.97232 0.91149 0.94209 1.23623 0.84884 1.02399 0.94669 1.86248 1.42073 1.45796 1.48651 1.68406 1.02087 1.25674 1.25472 0.90224 0.87344 0.87663 0.87489 0.84825 0.85346 0.85425 0.86216 0.91035 0.90774 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 13.92 55.55 0.77 -20.32 16 2 C 0.09 2.33 5.39 -17.35 -0.09 2.23 16 3 Si 0.91 20.83 24.51 -169.99 -4.17 16.66 16 4 H -0.27 -5.87 6.70 56.52 0.38 -5.49 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.25 -5.96 6.88 56.52 0.39 -5.58 16 7 C -0.42 -11.66 9.78 -37.73 -0.37 -12.03 16 8 H 0.10 2.89 8.06 -52.49 -0.42 2.46 16 9 C 0.26 6.85 5.95 -85.01 -0.51 6.34 16 10 C -0.28 -6.83 7.19 -38.63 -0.28 -7.11 16 11 C -0.05 -1.09 10.15 -39.40 -0.40 -1.49 16 12 C -0.28 -5.99 9.47 -38.77 -0.37 -6.36 16 13 C 0.19 4.32 6.73 -82.95 -0.56 3.77 16 14 C -0.03 -0.52 5.89 -104.75 -0.62 -1.14 16 15 C -0.10 -1.62 9.41 -39.25 -0.37 -1.98 16 16 C -0.13 -1.71 10.02 -39.65 -0.40 -2.11 16 17 C -0.12 -1.67 9.95 -39.36 -0.39 -2.07 16 18 C 0.03 0.55 6.49 -39.17 -0.25 0.29 16 19 C 0.08 1.65 6.50 -38.75 -0.25 1.40 16 20 O -0.25 -5.04 8.19 -32.48 -0.27 -5.30 16 21 C 0.01 0.21 7.26 37.40 0.27 0.48 16 22 C 0.02 0.25 7.26 37.40 0.27 0.52 16 23 O -0.31 -4.77 10.42 -33.02 -0.34 -5.11 16 24 N -0.50 -13.13 8.04 -7.69 -0.06 -13.19 16 25 H 0.29 6.80 8.29 -40.82 -0.34 6.47 16 26 H 0.11 2.60 4.72 -52.49 -0.25 2.35 16 27 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.11 1.87 6.20 -52.49 -0.33 1.55 16 29 H 0.13 1.85 6.20 -52.49 -0.33 1.52 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -31.03 293.40 -7.40 -38.44 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.45 Total: 3.64 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.31 Total: -19.24 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.71 Total: -33.51 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.61 Total: -10.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.17 Total: 16.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.03 -7.40 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242467316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.269 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds