Wall clock time and date at job start Tue Mar 31 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86808 * 119.99891 * 2 1 4 4 H 1.48496 * 109.46892 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47234 * 119.99771 * 3 2 1 6 6 H 1.48504 * 109.47024 * 239.99726 * 3 2 1 7 7 C 1.40099 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00271 * 154.73881 * 7 2 1 9 9 C 1.40760 * 119.99638 * 334.73275 * 7 2 1 10 10 C 1.40871 * 120.62441 * 334.48464 * 9 7 2 11 11 C 1.36318 * 119.95480 * 179.75992 * 10 9 7 12 12 C 1.38814 * 121.34091 * 0.52299 * 11 10 9 13 13 C 1.50701 * 119.34676 * 179.75265 * 12 11 10 14 14 F 1.39902 * 109.47363 * 269.97887 * 13 12 11 15 15 F 1.39892 * 109.47263 * 29.98442 * 13 12 11 16 16 F 1.39904 * 109.46721 * 149.97870 * 13 12 11 17 17 C 1.37878 * 121.30186 * 359.73342 * 12 11 10 18 18 C 1.39551 * 119.92028 * 0.02562 * 17 12 11 19 19 C 1.47142 * 120.64246 * 179.97438 * 18 17 12 20 20 C 1.33218 * 125.45565 * 104.71004 * 19 18 17 21 21 C 1.51139 * 109.08785 * 179.86531 * 20 19 18 22 22 N 1.48175 * 105.52591 * 343.25000 * 21 20 19 23 23 C 1.48161 * 103.09601 * 26.40545 * 22 21 20 24 24 H 0.97003 * 119.99670 * 174.21320 * 1 2 3 25 25 H 1.07998 * 120.02143 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.32688 * 180.25691 * 11 10 9 27 27 H 1.08003 * 120.03675 * 180.02562 * 17 12 11 28 28 H 1.07999 * 125.45749 * 0.02562 * 20 19 18 29 29 H 1.09011 * 110.40139 * 224.13766 * 21 20 19 30 30 H 1.08993 * 110.03661 * 102.17358 * 21 20 19 31 31 H 1.00902 * 110.99970 * 145.31408 * 22 21 20 32 32 H 1.08998 * 110.25217 * 214.38285 * 23 22 21 33 33 H 1.08998 * 110.32633 * 92.41174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0953 1.6966 1.2125 6 1 3.0954 1.6965 -1.2125 7 6 2.0081 -1.2133 -0.0005 8 1 3.0107 -1.2578 -0.3997 9 6 1.4053 -2.3742 0.5193 10 6 0.3889 -2.2817 1.4903 11 6 -0.1889 -3.4147 1.9808 12 6 0.2101 -4.6729 1.5511 13 6 -0.4556 -5.8958 2.1277 14 9 0.2435 -6.3150 3.2648 15 9 -1.7743 -5.5873 2.4784 16 9 -0.4540 -6.9205 1.1751 17 6 1.2032 -4.8259 0.6070 18 6 1.8278 -3.7016 0.0653 19 6 2.8898 -3.8464 -0.9427 20 6 2.7532 -3.6161 -2.2477 21 6 4.0733 -3.8759 -2.9363 22 7 5.0889 -3.8825 -1.8574 23 6 4.3087 -4.2867 -0.6645 24 1 -0.4850 -0.8358 -0.0847 25 1 0.0647 -1.3137 1.8427 26 1 -0.9701 -3.3319 2.7219 27 1 1.4974 -5.8146 0.2871 28 1 1.8453 -3.2929 -2.7352 29 1 4.2900 -3.0840 -3.6535 30 1 4.0491 -4.8434 -3.4375 31 1 5.8207 -4.5489 -2.0537 32 1 4.6916 -3.7854 0.2244 33 1 4.3493 -5.3681 -0.5340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243110494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:23 Heat of formation + Delta-G solvation = -121.656886 kcal Electronic energy + Delta-G solvation = -21989.786877 eV Core-core repulsion = 18178.744651 eV Total energy + Delta-G solvation = -3811.042225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.40736 -46.95266 -46.87519 -38.75928 -37.40376 -34.41239 -31.68260 -30.11086 -28.80141 -27.54200 -26.59192 -23.77341 -22.14282 -20.97913 -20.90431 -18.55524 -18.01522 -17.75045 -17.57658 -17.12386 -15.83827 -14.97144 -14.81262 -14.39702 -14.03577 -13.81876 -13.60982 -13.39857 -13.23883 -13.12289 -13.10459 -12.85035 -12.57908 -12.39464 -12.05211 -11.90613 -11.76907 -11.44199 -11.19799 -10.96116 -10.65697 -10.55346 -10.10248 -9.82921 -9.36210 -8.96966 -8.05834 -7.93526 -7.71574 -7.47204 -4.82463 2.24503 2.46616 2.80516 3.01845 3.07479 3.22458 3.55751 3.78064 4.13680 4.55854 4.83967 4.92237 4.93127 5.25502 5.27972 5.42479 5.71034 5.73446 5.84564 5.87016 6.01712 6.10643 6.39883 6.64282 6.70141 6.76731 7.00578 7.07465 7.23342 7.35205 7.46845 7.48534 7.52041 7.57385 7.77615 7.91472 8.39775 8.46676 9.64662 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.007104 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.936316 B = 3940.515848 C = 5604.790233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.035 3.965 3 Si 1.065 2.935 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.462 4.462 8 H 0.091 0.909 9 C 0.122 3.878 10 C -0.229 4.229 11 C -0.027 4.027 12 C -0.341 4.341 13 C 0.516 3.484 14 F -0.196 7.196 15 F -0.193 7.193 16 F -0.195 7.195 17 C -0.009 4.009 18 C -0.182 4.182 19 C -0.034 4.034 20 C -0.188 4.188 21 C 0.067 3.933 22 N -0.660 5.660 23 C 0.065 3.935 24 H 0.305 0.695 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.130 0.870 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.333 0.667 32 H 0.084 0.916 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -4.464 -1.506 5.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.191 4.191 3 Si 0.887 3.113 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.248 4.248 11 C -0.046 4.046 12 C -0.344 4.344 13 C 0.463 3.537 14 F -0.178 7.178 15 F -0.175 7.175 16 F -0.176 7.176 17 C -0.028 4.028 18 C -0.184 4.184 19 C -0.035 4.035 20 C -0.207 4.207 21 C -0.062 4.062 22 N -0.287 5.287 23 C -0.063 4.063 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.355 -2.107 -1.316 4.175 hybrid contribution -0.250 -3.002 -0.054 3.013 sum 3.106 -5.109 -1.370 6.134 Atomic orbital electron populations 1.70442 1.08331 1.35055 1.24675 1.27351 0.95575 1.04931 0.91240 0.83613 0.75783 0.73202 0.78671 1.19491 1.19485 1.19509 1.20849 1.03044 0.93325 1.31526 0.89117 1.18730 0.89558 0.91025 0.88860 1.20731 1.04221 0.97025 1.02820 1.19942 0.96551 0.91431 0.96638 1.18676 1.11123 0.90708 1.13855 1.18556 0.75922 0.84131 0.75132 1.93137 1.79231 1.91717 1.53680 1.93087 1.38696 1.93110 1.92600 1.93085 1.96422 1.63232 1.64905 1.20212 0.93061 0.96676 0.92843 1.18984 1.03253 0.92280 1.03877 1.20426 0.92829 0.96941 0.93304 1.23793 0.97575 1.04262 0.95037 1.21679 0.90196 0.99731 0.94551 1.63789 1.10340 1.51232 1.03371 1.21775 0.91826 0.97826 0.94905 0.88041 0.86874 0.88385 0.88230 0.85186 0.90332 0.93949 0.85280 0.89794 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.36 12.33 55.56 0.68 -17.67 16 2 C 0.03 0.80 4.95 -17.31 -0.09 0.71 16 3 Si 1.07 19.75 30.00 -169.99 -5.10 14.65 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 7 C -0.46 -11.06 8.52 -37.93 -0.32 -11.38 16 8 H 0.09 2.20 7.45 -52.49 -0.39 1.80 16 9 C 0.12 2.95 5.46 -104.61 -0.57 2.37 16 10 C -0.23 -5.40 7.90 -39.28 -0.31 -5.71 16 11 C -0.03 -0.59 9.26 -40.06 -0.37 -0.96 16 12 C -0.34 -7.40 5.46 -104.54 -0.57 -7.97 16 13 C 0.52 10.24 3.34 36.01 0.12 10.36 16 14 F -0.20 -3.82 17.30 2.25 0.04 -3.78 16 15 F -0.19 -3.76 16.39 2.25 0.04 -3.72 16 16 F -0.19 -3.75 16.40 2.25 0.04 -3.71 16 17 C -0.01 -0.20 9.12 -39.22 -0.36 -0.56 16 18 C -0.18 -4.09 5.90 -102.46 -0.60 -4.69 16 19 C -0.03 -0.69 4.60 -102.54 -0.47 -1.16 16 20 C -0.19 -3.49 10.92 -35.84 -0.39 -3.88 16 21 C 0.07 1.02 7.48 -4.06 -0.03 0.99 16 22 N -0.66 -10.17 7.78 -113.89 -0.89 -11.05 16 23 C 0.07 1.12 7.44 -4.06 -0.03 1.09 16 24 H 0.31 7.54 6.67 -40.82 -0.27 7.27 16 25 H 0.11 2.71 6.51 -52.49 -0.34 2.37 16 26 H 0.10 2.00 7.52 -52.49 -0.39 1.60 16 27 H 0.10 1.98 7.55 -52.48 -0.40 1.59 16 28 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 29 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.33 4.08 8.92 -39.29 -0.35 3.73 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -24.68 297.12 -7.77 -32.45 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.06 Total: 9.15 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -4.00 Total: -20.78 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: -0.20 Total: -28.73 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 0.11 Total: -11.21 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.10 Total: 14.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.68 -7.77 -32.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243110494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.210 kcal (2) G-P(sol) polarization free energy of solvation -24.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds