Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38134 * 119.84075 * 2 1 4 4 C 1.39739 * 120.15526 * 180.02562 * 3 2 1 5 5 C 1.47757 * 120.07724 * 179.97438 * 4 3 2 6 6 O 1.21466 * 120.00404 * 180.02562 * 5 4 3 7 7 O 1.34708 * 119.99699 * 359.97438 * 5 4 3 8 8 C 1.39361 * 119.84990 * 359.65562 * 4 3 2 9 9 C 1.39411 * 119.68641 * 0.61389 * 8 4 3 10 10 C 1.47842 * 120.07817 * 179.69912 * 9 8 4 11 11 C 1.39674 * 120.64666 * 129.98130 * 10 9 8 12 12 C 1.38399 * 118.47263 * 180.25031 * 11 10 9 13 13 C 1.39057 * 119.72425 * 359.74387 * 12 11 10 14 14 N 1.31277 * 121.34075 * 0.02562 * 13 12 11 15 15 C 1.33701 * 121.63354 * 0.02562 * 14 13 12 16 16 C 1.40826 * 119.93903 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99786 * 187.47791 * 16 15 14 18 18 C 1.40152 * 119.99692 * 7.48315 * 16 15 14 19 19 N 1.30688 * 119.99767 * 196.27895 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 16.27251 * 18 16 15 21 21 H 1.48498 * 109.47466 * 270.00238 * 20 18 16 22 22 H 1.48496 * 109.47333 * 30.00391 * 20 18 16 23 23 H 1.48507 * 109.46821 * 150.00112 * 20 18 16 24 24 C 1.38015 * 119.84670 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46774 * 269.97840 * 1 2 3 26 26 H 1.08995 * 109.46809 * 29.98576 * 1 2 3 27 27 H 1.08995 * 109.46740 * 149.98223 * 1 2 3 28 28 H 1.08003 * 119.92315 * 0.02562 * 3 2 1 29 29 H 0.96694 * 117.00122 * 180.02562 * 7 5 4 30 30 H 1.07996 * 120.15811 * 180.34339 * 8 4 3 31 31 H 1.07996 * 120.75955 * 359.97003 * 11 10 9 32 32 H 1.08004 * 120.13652 * 179.72490 * 12 11 10 33 33 H 1.08003 * 119.32929 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00296 * 355.64481 * 19 18 16 35 35 H 1.08000 * 119.92314 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1982 0.0000 4 6 3.5918 1.2059 -0.0005 5 6 4.3252 2.4885 -0.0011 6 8 5.5399 2.4936 -0.0021 7 8 3.6468 3.6523 -0.0016 8 6 4.2920 0.0010 0.0062 9 6 3.5919 -1.2046 0.0004 10 6 4.3261 -2.4878 0.0008 11 6 4.0054 -3.4913 0.9179 12 6 4.7252 -4.6728 0.8816 13 6 5.7361 -4.8357 -0.0592 14 7 6.0268 -3.8882 -0.9201 15 6 5.3670 -2.7254 -0.9325 16 6 5.7089 -1.7333 -1.8716 17 1 5.2627 -0.7519 -1.8069 18 6 6.6280 -2.0195 -2.8901 19 7 7.1872 -1.0455 -3.5583 20 14 7.0539 -3.7933 -3.2925 21 1 8.2112 -4.2239 -2.4676 22 1 5.8860 -4.6618 -2.9982 23 1 7.4032 -3.9042 -4.7316 24 6 2.1939 -1.1971 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3632 -0.8898 -0.5141 28 1 1.6505 2.1313 0.0004 29 1 4.1700 4.4654 -0.0024 30 1 5.3720 0.0011 0.0114 31 1 3.2171 -3.3466 1.6417 32 1 4.5028 -5.4649 1.5813 33 1 6.2935 -5.7605 -0.0821 34 1 6.9198 -0.1278 -3.3931 35 1 1.6502 -2.1302 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243177416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -60.621926 kcal Electronic energy + Delta-G solvation = -21352.795834 eV Core-core repulsion = 18086.257024 eV Total energy + Delta-G solvation = -3266.538811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21140 -39.10507 -37.98097 -35.93171 -33.99849 -33.11026 -32.11701 -30.94810 -29.06066 -26.71681 -25.65403 -24.47151 -23.00026 -21.46724 -20.35002 -20.01266 -18.47073 -17.81177 -16.87853 -15.76607 -15.62460 -15.43579 -15.28517 -14.70684 -14.31631 -13.85495 -13.55665 -13.35001 -13.02596 -12.74424 -12.64957 -12.27225 -12.14810 -11.98109 -11.80073 -11.50650 -11.35562 -11.07832 -10.85439 -10.64374 -10.32742 -10.06559 -9.84820 -9.21339 -9.01438 -8.54795 -8.35236 -7.94757 -7.60435 -7.35934 -4.85785 1.01484 1.57564 2.41233 2.57800 2.88280 3.18319 3.50411 3.58914 3.89271 4.11386 4.31782 4.50182 4.94556 5.07769 5.24843 5.41661 5.45817 5.57185 5.65481 5.68430 5.73216 5.80178 5.85282 5.93964 6.17806 6.22749 6.36230 6.47121 6.54225 6.63642 6.70798 6.89056 6.94412 7.13461 7.30414 7.33530 7.40294 7.60076 7.98820 8.05915 8.18769 8.52540 9.39073 9.85781 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.006731 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.384434 B = 4158.873159 C = 5315.103273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.087 4.087 4 C -0.129 4.129 5 C 0.526 3.474 6 O -0.510 6.510 7 O -0.516 6.516 8 C -0.046 4.046 9 C 0.015 3.985 10 C -0.232 4.232 11 C -0.017 4.017 12 C -0.321 4.321 13 C 0.159 3.841 14 N -0.566 5.566 15 C 0.258 3.742 16 C -0.463 4.463 17 H 0.095 0.905 18 C 0.046 3.954 19 N -0.785 5.785 20 Si 1.143 2.857 21 H -0.284 1.284 22 H -0.279 1.279 23 H -0.326 1.326 24 C -0.091 4.091 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.409 0.591 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.288 0.712 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 3.334 5.926 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.105 4.105 4 C -0.130 4.130 5 C 0.371 3.629 6 O -0.399 6.399 7 O -0.328 6.328 8 C -0.064 4.064 9 C 0.015 3.985 10 C -0.236 4.236 11 C -0.041 4.041 12 C -0.344 4.344 13 C -0.006 4.006 14 N -0.282 5.282 15 C 0.137 3.863 16 C -0.493 4.493 17 H 0.112 0.888 18 C -0.178 4.178 19 N -0.405 5.405 20 Si 0.975 3.025 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.258 1.258 24 C -0.109 4.109 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.267 0.733 30 H 0.158 0.842 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.520 2.148 4.331 9.796 hybrid contribution -1.243 1.852 1.685 2.795 sum -9.763 4.000 6.016 12.145 Atomic orbital electron populations 1.20728 0.91085 1.02635 1.02016 1.19691 0.95980 0.92747 1.02034 1.21118 0.92400 0.97928 0.99103 1.18878 0.93548 0.89782 1.10810 1.21073 0.85615 0.84231 0.72025 1.90906 1.15069 1.87957 1.45990 1.84563 1.45053 1.16911 1.86285 1.21557 1.01138 0.89719 0.94013 1.18554 0.91915 0.92398 0.95663 1.19067 1.04512 0.94590 1.05427 1.20977 0.95908 0.92295 0.94928 1.21072 1.05920 0.99916 1.07487 1.22245 0.92789 0.95948 0.89599 1.66822 1.31703 1.03271 1.26442 1.18440 0.87162 0.89353 0.91332 1.21014 1.20684 0.98979 1.08576 0.88758 1.27858 0.90383 1.08352 0.91214 1.70577 1.31020 1.02717 1.36153 0.82128 0.77893 0.70780 0.71657 1.21047 1.20586 1.25829 1.21430 0.93520 0.97366 0.98573 0.91463 0.91710 0.91577 0.85351 0.73337 0.84163 0.87867 0.87734 0.85430 0.90078 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.00 36.01 0.36 -0.80 16 2 C -0.10 -1.54 5.87 -104.74 -0.61 -2.16 16 3 C -0.09 -1.33 9.26 -39.06 -0.36 -1.69 16 4 C -0.13 -2.32 5.87 -105.03 -0.62 -2.93 16 5 C 0.53 9.03 8.27 34.62 0.29 9.31 16 6 O -0.51 -10.44 17.13 -19.24 -0.33 -10.77 16 7 O -0.52 -6.50 12.67 -40.51 -0.51 -7.02 16 8 C -0.05 -0.95 7.09 -38.73 -0.27 -1.22 16 9 C 0.02 0.31 5.07 -104.95 -0.53 -0.22 16 10 C -0.23 -5.19 5.53 -104.07 -0.58 -5.77 16 11 C -0.02 -0.34 9.66 -38.99 -0.38 -0.72 16 12 C -0.32 -6.27 10.10 -39.22 -0.40 -6.67 16 13 C 0.16 3.38 11.17 -17.49 -0.20 3.18 16 14 N -0.57 -13.97 4.97 -10.91 -0.05 -14.02 16 15 C 0.26 6.53 6.30 -84.71 -0.53 6.00 16 16 C -0.46 -12.28 8.48 -37.89 -0.32 -12.60 16 17 H 0.09 2.52 5.19 -52.49 -0.27 2.25 16 18 C 0.05 1.23 5.52 -17.32 -0.10 1.14 16 19 N -0.78 -21.22 13.65 55.56 0.76 -20.46 16 20 Si 1.14 27.44 25.94 -169.99 -4.41 23.03 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 23 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 24 C -0.09 -1.54 9.18 -39.08 -0.36 -1.90 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.13 1.65 7.60 -52.48 -0.40 1.25 16 29 H 0.41 3.18 9.11 45.56 0.42 3.59 16 30 H 0.14 3.25 6.76 -52.49 -0.35 2.89 16 31 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.29 7.59 8.72 -40.82 -0.36 7.24 16 35 H 0.12 1.90 8.04 -52.49 -0.42 1.47 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -30.49 306.36 -7.29 -37.77 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.75 Total: 3.90 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -4.61 Total: -17.05 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.70 Total: -34.48 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.84 Total: -17.78 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -4.41 Total: 23.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.49 -7.29 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243177416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.850 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds