Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38134 * 119.84075 * 2 1 4 4 C 1.39739 * 120.15526 * 180.02562 * 3 2 1 5 5 C 1.47757 * 120.07724 * 179.97438 * 4 3 2 6 6 O 1.21466 * 120.00404 * 180.02562 * 5 4 3 7 7 O 1.34708 * 119.99699 * 359.97438 * 5 4 3 8 8 C 1.39361 * 119.84990 * 359.65562 * 4 3 2 9 9 C 1.39411 * 119.68641 * 0.61389 * 8 4 3 10 10 C 1.47842 * 120.07817 * 179.69912 * 9 8 4 11 11 C 1.39674 * 120.64666 * 129.98130 * 10 9 8 12 12 C 1.38399 * 118.47263 * 180.25031 * 11 10 9 13 13 C 1.39057 * 119.72425 * 359.74387 * 12 11 10 14 14 N 1.31277 * 121.34075 * 0.02562 * 13 12 11 15 15 C 1.33701 * 121.63354 * 0.02562 * 14 13 12 16 16 C 1.40826 * 119.93903 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99786 * 187.47791 * 16 15 14 18 18 C 1.40152 * 119.99692 * 7.48315 * 16 15 14 19 19 N 1.30688 * 119.99767 * 196.27895 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 16.27251 * 18 16 15 21 21 H 1.48498 * 109.47466 * 270.00238 * 20 18 16 22 22 H 1.48496 * 109.47333 * 30.00391 * 20 18 16 23 23 H 1.48507 * 109.46821 * 150.00112 * 20 18 16 24 24 C 1.38015 * 119.84670 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46774 * 269.97840 * 1 2 3 26 26 H 1.08995 * 109.46809 * 29.98576 * 1 2 3 27 27 H 1.08995 * 109.46740 * 149.98223 * 1 2 3 28 28 H 1.08003 * 119.92315 * 0.02562 * 3 2 1 29 29 H 0.96694 * 117.00122 * 180.02562 * 7 5 4 30 30 H 1.07996 * 120.15811 * 180.34339 * 8 4 3 31 31 H 1.07996 * 120.75955 * 359.97003 * 11 10 9 32 32 H 1.08004 * 120.13652 * 179.72490 * 12 11 10 33 33 H 1.08003 * 119.32929 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00296 * 355.64481 * 19 18 16 35 35 H 1.08000 * 119.92314 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1982 0.0000 4 6 3.5918 1.2059 -0.0005 5 6 4.3252 2.4885 -0.0011 6 8 5.5399 2.4936 -0.0021 7 8 3.6468 3.6523 -0.0016 8 6 4.2920 0.0010 0.0062 9 6 3.5919 -1.2046 0.0004 10 6 4.3261 -2.4878 0.0008 11 6 4.0054 -3.4913 0.9179 12 6 4.7252 -4.6728 0.8816 13 6 5.7361 -4.8357 -0.0592 14 7 6.0268 -3.8882 -0.9201 15 6 5.3670 -2.7254 -0.9325 16 6 5.7089 -1.7333 -1.8716 17 1 5.2627 -0.7519 -1.8069 18 6 6.6280 -2.0195 -2.8901 19 7 7.1872 -1.0455 -3.5583 20 14 7.0539 -3.7933 -3.2925 21 1 8.2112 -4.2239 -2.4676 22 1 5.8860 -4.6618 -2.9982 23 1 7.4032 -3.9042 -4.7316 24 6 2.1939 -1.1971 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3632 -0.8898 -0.5141 28 1 1.6505 2.1313 0.0004 29 1 4.1700 4.4654 -0.0024 30 1 5.3720 0.0011 0.0114 31 1 3.2171 -3.3466 1.6417 32 1 4.5028 -5.4649 1.5813 33 1 6.2935 -5.7605 -0.0821 34 1 6.9198 -0.1278 -3.3931 35 1 1.6502 -2.1302 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243177416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -79.230700 kcal Electronic energy + Delta-G solvation = -21353.602771 eV Core-core repulsion = 18086.257024 eV Total energy + Delta-G solvation = -3267.345748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57378 -40.67801 -39.45181 -37.19743 -35.86253 -34.53420 -33.50759 -32.66816 -30.61992 -27.86800 -27.38857 -25.81599 -24.55854 -23.20887 -21.75741 -21.39279 -20.36400 -19.11844 -18.23722 -17.38080 -17.06246 -16.92200 -16.75156 -16.18658 -15.79604 -15.69439 -14.69045 -14.60385 -14.52561 -14.37194 -14.24057 -13.93336 -13.71952 -13.12788 -13.02150 -12.82068 -12.70038 -12.65898 -12.53367 -12.19568 -11.80139 -11.74566 -11.65147 -11.14399 -10.62481 -10.11076 -9.80187 -9.77857 -9.27911 -9.22071 -6.76015 -0.35277 0.12895 0.75201 0.90838 1.48527 1.54810 1.68248 1.96208 1.98563 2.40689 2.60482 2.75358 3.57993 3.73604 3.83183 4.01602 4.06882 4.21393 4.28100 4.31429 4.44461 4.61976 4.65440 4.74624 4.85950 4.92287 4.96953 5.13995 5.25838 5.27590 5.35725 5.39027 5.47683 5.52365 5.60320 5.72531 5.89083 5.94326 6.05546 6.38707 6.67506 6.87845 7.60766 7.88013 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.006731 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.384434 B = 4158.873159 C = 5315.103273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.071 4.071 4 C -0.144 4.144 5 C 0.532 3.468 6 O -0.556 6.556 7 O -0.495 6.495 8 C -0.071 4.071 9 C -0.013 4.013 10 C -0.237 4.237 11 C -0.023 4.023 12 C -0.293 4.293 13 C 0.134 3.866 14 N -0.593 5.593 15 C 0.243 3.757 16 C -0.504 4.504 17 H 0.076 0.924 18 C 0.016 3.984 19 N -0.820 5.820 20 Si 1.180 2.820 21 H -0.285 1.285 22 H -0.279 1.279 23 H -0.323 1.323 24 C -0.086 4.086 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.163 0.837 29 H 0.432 0.568 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.277 0.723 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 2.396 7.961 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.089 4.089 4 C -0.145 4.145 5 C 0.378 3.622 6 O -0.448 6.448 7 O -0.308 6.308 8 C -0.090 4.090 9 C -0.013 4.013 10 C -0.240 4.240 11 C -0.047 4.047 12 C -0.315 4.315 13 C -0.028 4.028 14 N -0.311 5.311 15 C 0.120 3.880 16 C -0.535 4.535 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.442 5.442 20 Si 1.010 2.990 21 H -0.212 1.212 22 H -0.206 1.206 23 H -0.256 1.256 24 C -0.104 4.104 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.180 0.820 29 H 0.294 0.706 30 H 0.114 0.886 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.088 0.912 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.295 1.212 6.393 13.910 hybrid contribution -0.329 2.111 1.343 2.524 sum -12.624 3.323 7.736 15.174 Atomic orbital electron populations 1.20837 0.87337 1.04155 1.03864 1.20194 0.98417 0.91465 0.99289 1.21521 0.90956 0.99793 0.96634 1.19029 0.94999 0.89225 1.11211 1.21022 0.84915 0.85250 0.70991 1.90895 1.17044 1.88677 1.48229 1.84484 1.44459 1.16705 1.85165 1.21248 0.99230 0.91653 0.96828 1.18603 0.93511 0.91240 0.97974 1.19440 1.03594 0.96234 1.04782 1.21444 0.96805 0.91704 0.94711 1.21636 1.03351 1.00362 1.06114 1.22938 0.93914 0.96458 0.89489 1.66734 1.32403 1.03815 1.28121 1.18652 0.88052 0.89511 0.91765 1.20891 1.22906 0.99180 1.10530 0.90626 1.28629 0.90342 1.09998 0.91194 1.70628 1.32913 1.02333 1.38333 0.81652 0.77423 0.68532 0.71428 1.21176 1.20588 1.25585 1.21654 0.91904 0.99344 0.97517 0.89236 0.89830 0.90565 0.81994 0.70601 0.88650 0.84168 0.83428 0.82075 0.91209 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.00 71.24 0.71 -0.99 16 2 C -0.09 -2.42 5.87 -19.94 -0.12 -2.54 16 3 C -0.07 -1.97 9.26 22.61 0.21 -1.76 16 4 C -0.14 -5.19 5.87 -20.13 -0.12 -5.31 16 5 C 0.53 18.53 8.27 70.34 0.58 19.11 16 6 O -0.56 -24.14 17.13 19.95 0.34 -23.80 16 7 O -0.49 -11.51 12.67 -56.18 -0.71 -12.22 16 8 C -0.07 -3.09 7.09 22.82 0.16 -2.93 16 9 C -0.01 -0.51 5.07 -20.08 -0.10 -0.62 16 10 C -0.24 -10.61 5.53 -19.51 -0.11 -10.72 16 11 C -0.02 -0.84 9.66 22.66 0.22 -0.62 16 12 C -0.29 -10.29 10.10 22.50 0.23 -10.06 16 13 C 0.13 5.39 11.17 84.97 0.95 6.34 16 14 N -0.59 -29.42 4.97 -188.43 -0.94 -30.36 16 15 C 0.24 12.70 6.30 40.37 0.25 12.96 16 16 C -0.50 -28.69 8.48 23.37 0.20 -28.49 16 17 H 0.08 4.46 5.19 -2.91 -0.02 4.44 16 18 C 0.02 0.92 5.52 85.33 0.47 1.39 16 19 N -0.82 -47.76 13.65 21.86 0.30 -47.46 16 20 Si 1.18 57.98 25.94 68.60 1.78 59.76 16 21 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.28 -13.43 6.52 99.48 0.65 -12.78 16 23 H -0.32 -15.41 7.11 99.48 0.71 -14.71 16 24 C -0.09 -2.72 9.18 22.59 0.21 -2.51 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 27 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.16 3.40 7.60 -2.91 -0.02 3.37 16 29 H 0.43 5.86 9.11 -74.06 -0.67 5.18 16 30 H 0.10 4.94 6.76 -2.91 -0.02 4.92 16 31 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.16 5.24 8.06 -2.91 -0.02 5.21 16 34 H 0.28 16.10 8.72 -92.71 -0.81 15.29 16 35 H 0.14 3.87 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -72.63 306.36 4.89 -67.74 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.37 Total: 13.08 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 3.75 Total: -26.74 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -0.64 Total: -77.82 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.37 Total: -36.02 kcal Atomic # 14 Polarization: 57.98 SS G_CDS: 1.78 Total: 59.76 kcal Total: -72.63 4.89 -67.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243177416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.490 kcal (2) G-P(sol) polarization free energy of solvation -72.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds